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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000310,UBERON:0000465,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000915,UBERON:0001062,UBERON:0001443,UBERON:0002384,UBERON:0005482
|DRA_sample_Accession=CAGE@SAMD00005354
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002334,CL:0002371,CL:0002580
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005354!sRNA-Seq@SAMD00005354
|accession_numbers=CAGE;DRX008041;DRR008913;DRZ000338;DRZ001723;DRZ011688;DRZ013073
|accession_numbers_RNASeq=RNA-Seq;DRX057108;DRR062867;DRZ007943!sRNA-Seq;DRX036989;DRR041355;DRZ006997
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000408,FF:0000350,FF:0000139,FF:0000406,FF:0000671
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.09!122.62!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.98!106.96!PRRX1;;chr12:54402745..54402788,+!p1@HOXC8!1.70!49.41!HOXC8;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.45!PRRX2;;chr18:53068911..53068935,-!p4@TCF4!1.43!29.46!TCF4;;chr1:170632959..170632987,+!p4@PRRX1!1.37!24.55!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.36!22.10!HOXC5;;chr19:47523058..47523114,+!p1@NPAS1!1.34!20.87!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!1.34!20.72!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.33!20.41!DLX5;;chr14:62162258..62162269,+!p2@HIF1A!1.31!181.85!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!1.31!98.22!HIF1A;;chr1:170632250..170632277,+!p7@PRRX1!1.29!18.42!PRRX1;;chr12:54402790..54402805,+!p2@HOXC8!1.28!17.96!HOXC8;;chr9:132427972..132428056,+!p1@PRRX2!1.26!22.25!PRRX2;;chr2:19558373..19558392,-!p1@OSR1!1.25!45.27!OSR1;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.08!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.71!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.73!ZBED1;;chr4:111558135..111558198,-!p2@PITX2!1.25!16.73!PITX2;;chr6:144289132..144289134,-!p3@PLAGL1!1.23!36.83!PLAGL1;;chr8:40755333..40755352,-!p1@ZMAT4!1.23!15.96!ZMAT4;;chr6:144329384..144329405,-!p1@PLAGL1!1.21!175.56!PLAGL1;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.19!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.18!39.13!TWIST1;;chr10:131762504..131762555,-!p1@EBF3!1.17!13.66!EBF3;;chr6:19837592..19837621,+!p1@ID4!1.16!81.03!ID4;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!69.83!CREB3L1;;chrX:106960180..106960197,-!p2@TSC22D3!1.16!50.95!TSC22D3;;chr12:54402729..54402743,+!p3@HOXC8!1.16!13.50!HOXC8;;chr4:4861385..4861398,+!p1@MSX1!1.15!38.67!MSX1;;chr5:158526917..158526932,-!p1@EBF1!1.14!31.92!EBF1;;chr2:119605214..119605230,-!p1@EN1!1.13!12.58!EN1;;chr17:46682321..46682362,-!p1@HOXB6!1.12!12.28!HOXB6;;chr1:170632439..170632465,+!p11@PRRX1!1.08!11.05!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.07!10.74!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.05!232.19!AEBP1;;chr2:121493425..121493474,+!p1@GLI2!1.03!21.79!GLI2;;chr2:121493492..121493537,+!p2@GLI2!1.03!16.11!GLI2;;chr12:80085061..80085119,-!p6@PAWR!1.02!15.35!PAWR;;chr12:54410948..54410992,+!p3@HOXC5!1.02!9.51!HOXC5;;chr14:62162224..62162254,+!p1@HIF1A!1.00!1340.18!HIF1A;;chr5:72744594..72744609,-!p1@FOXD1!0.99!40.97!FOXD1;;chr12:54447637..54447659,+!p4@HOXC4!0.99!8.75!HOXC4;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.82!PRRX1;;chr1:23885981..23886002,-!p1@ID3!0.97!1497.02!ID3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.97!76.12!PPP1R13L;;chr8:77593474..77593612,+!p1@ZFHX4!0.97!36.52!ZFHX4;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.19!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.95!21.33!ZFPM2;;chr1:170632683..170632696,+!p12@PRRX1!0.95!7.83!PRRX1;;chr14:95236551..95236576,-!p2@GSC!0.94!7.67!GSC;;chr2:177001290..177001315,+!p1@HOXD3!0.94!7.67!HOXD3;;chr4:174451370..174451387,-!p1@HAND2!0.91!7.21!HAND2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.21!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.91!7.06!TBX5;;chr4:111544219..111544240,-!p1@PITX2!0.91!7.06!PITX2;;chr19:50432453..50432468,+!p1@ATF5!0.89!393.94!ATF5;;chr10:63809106..63809127,+!p1@ARID5B!0.89!96.83!ARID5B;;chr17:38498594..38498661,+!p2@RARA!0.88!23.17!RARA;;chr10:114710244..114710257,+!p3@TCF7L2!0.88!18.72!TCF7L2;;chr12:48298765..48298783,-!p2@VDR!0.88!14.12!VDR;;chr11:12696071..12696086,+!p3@TEAD1!0.88!8.75!TEAD1;;chrX:106960221..106960236,-!p3@TSC22D3!0.87!18.72!TSC22D3;;chr12:56753869..56753930,-!p1@STAT2!0.86!294.65!STAT2;;chr7:86782094..86782108,+!p5@DMTF1!0.86!10.44!DMTF1;;chrX:66763856..66763896,+!p1@AR!0.85!8.90!AR;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.14!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!0.85!6.14!HAND2;;chr3:170076314..170076334,+!p2@SKIL!0.84!7.83!SKIL;;chr3:71630980..71631110,-!p3@FOXP1!0.83!21.18!FOXP1;;chr16:67881588..67881612,-!p2@CENPT!0.83!8.13!CENPT;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.83!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.83!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.68!HOXC9;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.88!TWIST2;;chr1:200379104..200379128,-!p2@ZNF281!0.81!14.27!ZNF281;;chr17:38256799..38256815,-!p3@NR1D1!0.81!10.28!NR1D1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.13!GATA6;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.37!EBF1;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.58!ZNF503;;chr2:208030647..208030689,-!p1@KLF7!0.80!47.88!KLF7;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.37!ZNF668;;chr7:1577899..1577943,+!p3@MAFK!0.80!5.37!MAFK;;chr7:96654026..96654061,-!p2@DLX5!0.80!5.37!DLX5;;chr10:114710218..114710229,+!p4@TCF7L2!0.79!10.74!TCF7L2;;chr2:223163706..223163730,-!p1@PAX3!0.79!5.22!PAX3;;chr10:114709999..114710031,+!p1@TCF7L2!0.78!131.98!TCF7L2;;chr1:119530636..119530653,-!p2@TBX15!0.78!5.06!TBX15;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.72!SNAI2;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.96!TBX3;;chr12:80084303..80084332,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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12584.14320-155D9.hg38.nobarcode.ctss.bed.gz
|id=FF:14320-155D9
|id=FF:14320-155D9
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000671
|is_a=EFO:0002091;;FF:0000671
|is_obsolete=
|library_id=CNhs12584
|library_id_phase_based=2:CNhs12584
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14320
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ACTTGA.14320
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14320
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ACTTGA.14320
|name=Preadipocyte - breast, donor2 (nuclear fraction)
|name=Preadipocyte - breast, donor2 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 64:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12584,LSID912,release012,COMPLETED
|profile_hcage=CNhs12584,LSID912,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=155
|rna_box=155
|rna_catalog_number=N/A
|rna_catalog_number=N/A
Line 55: Line 81:
|rna_tube_id=155D9
|rna_tube_id=155D9
|rna_weight_ug=7.25625
|rna_weight_ug=7.25625
|rnaseq_library_id=RDhi10020!SRhi10009.ACTTGA
|sample_age=40
|sample_age=40
|sample_category=fractionations and perturbations
|sample_cell_catalog=F-BR-F
|sample_cell_catalog=F-BR-F
|sample_cell_line=
|sample_cell_line=
Line 68: Line 96:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=nuclear RNA
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.6092298507722e-211!GO:0043226;organelle;4.37846769538286e-168!GO:0043229;intracellular organelle;8.35365703155308e-168!GO:0043231;intracellular membrane-bound organelle;1.2282544717959e-162!GO:0043227;membrane-bound organelle;2.29254169950368e-162!GO:0005737;cytoplasm;1.56468114118163e-159!GO:0044444;cytoplasmic part;5.93362494028206e-112!GO:0044422;organelle part;2.14374225948825e-111!GO:0044446;intracellular organelle part;4.593958798528e-110!GO:0044238;primary metabolic process;4.6564702468543e-83!GO:0005515;protein binding;2.99011170676105e-81!GO:0044237;cellular metabolic process;6.87953043828648e-79!GO:0043170;macromolecule metabolic process;3.6831748427004e-78!GO:0032991;macromolecular complex;3.45732827860694e-74!GO:0005634;nucleus;2.13638818647404e-67!GO:0044428;nuclear part;1.10133960568507e-63!GO:0043233;organelle lumen;6.62270688567733e-61!GO:0031974;membrane-enclosed lumen;6.62270688567733e-61!GO:0030529;ribonucleoprotein complex;3.34814311842258e-54!GO:0003723;RNA binding;1.6536658027156e-53!GO:0016043;cellular component organization and biogenesis;2.4231625286833e-51!GO:0015031;protein transport;5.3140780673839e-45!GO:0043283;biopolymer metabolic process;1.56360980565186e-44!GO:0033036;macromolecule localization;3.62752327190861e-44!GO:0019538;protein metabolic process;4.46758770225134e-43!GO:0045184;establishment of protein localization;7.56684793546867e-41!GO:0031090;organelle membrane;8.87800750590267e-41!GO:0008104;protein localization;1.35636008028587e-40!GO:0006396;RNA processing;1.35636008028587e-40!GO:0005739;mitochondrion;1.61049904603211e-40!GO:0043234;protein complex;3.3458326994394e-40!GO:0031981;nuclear lumen;4.5209437228157e-40!GO:0046907;intracellular transport;5.50487864104345e-39!GO:0010467;gene expression;6.78065713889278e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.20390436696741e-37!GO:0044260;cellular macromolecule metabolic process;4.61884322187611e-37!GO:0044267;cellular protein metabolic process;3.6136914942794e-36!GO:0016071;mRNA metabolic process;5.41195910366867e-35!GO:0006412;translation;3.07788851378532e-32!GO:0006886;intracellular protein transport;2.57229999718306e-31!GO:0005829;cytosol;1.1992521601216e-30!GO:0006397;mRNA processing;3.60363807116744e-30!GO:0008380;RNA splicing;5.99158855476437e-30!GO:0031967;organelle envelope;1.26510473399056e-29!GO:0031975;envelope;1.89736243276895e-29!GO:0006996;organelle organization and biogenesis;3.61258216007582e-28!GO:0005840;ribosome;1.38924855803036e-27!GO:0009058;biosynthetic process;4.52804084998786e-27!GO:0044429;mitochondrial part;6.1229202128461e-27!GO:0065003;macromolecular complex assembly;8.12157426343423e-27!GO:0000166;nucleotide binding;8.1578298388558e-27!GO:0005654;nucleoplasm;8.08142987767327e-26!GO:0044249;cellular biosynthetic process;1.66931070637344e-25!GO:0022607;cellular component assembly;6.3398235959031e-25!GO:0051649;establishment of cellular localization;1.00110143172689e-24!GO:0051641;cellular localization;1.50662505615743e-24!GO:0009059;macromolecule biosynthetic process;2.58848176044291e-24!GO:0043228;non-membrane-bound organelle;9.78671127645882e-24!GO:0043232;intracellular non-membrane-bound organelle;9.78671127645882e-24!GO:0003735;structural constituent of ribosome;2.92356299481449e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.82690756294837e-23!GO:0003676;nucleic acid binding;2.80408378456921e-22!GO:0016462;pyrophosphatase activity;2.68873339672507e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.75401403521513e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.65085486737328e-21!GO:0005681;spliceosome;6.31257945358737e-21!GO:0017111;nucleoside-triphosphatase activity;7.80667420813518e-21!GO:0016070;RNA metabolic process;7.98408680407662e-21!GO:0044451;nucleoplasm part;9.35107264102694e-21!GO:0006259;DNA metabolic process;1.35334372974366e-20!GO:0033279;ribosomal subunit;2.266266235924e-20!GO:0017076;purine nucleotide binding;2.16838791864447e-19!GO:0032553;ribonucleotide binding;4.00909719264584e-19!GO:0032555;purine ribonucleotide binding;4.00909719264584e-19!GO:0048770;pigment granule;1.43219208126849e-18!GO:0042470;melanosome;1.43219208126849e-18!GO:0005783;endoplasmic reticulum;1.9745127087664e-18!GO:0016874;ligase activity;4.94807855269786e-18!GO:0012505;endomembrane system;8.40220812643314e-18!GO:0008134;transcription factor binding;8.46675569191879e-18!GO:0005740;mitochondrial envelope;9.21243826380858e-18!GO:0006457;protein folding;1.59732417641605e-17!GO:0005524;ATP binding;2.13105520024339e-17!GO:0031966;mitochondrial membrane;2.9790035884575e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.45887260423776e-17!GO:0030554;adenyl nucleotide binding;4.50969529384083e-17!GO:0048193;Golgi vesicle transport;5.48409827435637e-17!GO:0032559;adenyl ribonucleotide binding;5.48409827435637e-17!GO:0016192;vesicle-mediated transport;4.2197791965241e-16!GO:0019866;organelle inner membrane;4.97972673948094e-16!GO:0005794;Golgi apparatus;6.25787597377259e-16!GO:0006512;ubiquitin cycle;8.44332792878153e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.86255908049969e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.89747815091311e-15!GO:0019941;modification-dependent protein catabolic process;4.03288231933061e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.03288231933061e-15!GO:0044257;cellular protein catabolic process;4.60771174854067e-15!GO:0022618;protein-RNA complex assembly;4.62411531027703e-15!GO:0005743;mitochondrial inner membrane;4.68245507484427e-15!GO:0044265;cellular macromolecule catabolic process;5.00923419427339e-15!GO:0008135;translation factor activity, nucleic acid binding;6.49104912243339e-15!GO:0006119;oxidative phosphorylation;1.1604041657921e-14!GO:0006605;protein targeting;1.17943978512131e-14!GO:0005730;nucleolus;3.60926167300753e-14!GO:0044432;endoplasmic reticulum part;3.82736340523121e-14!GO:0007049;cell cycle;4.07065698916121e-14!GO:0043285;biopolymer catabolic process;4.91916057717154e-14!GO:0044445;cytosolic part;2.41030496849287e-13!GO:0000502;proteasome complex (sensu Eukaryota);3.01346488658716e-13!GO:0031965;nuclear membrane;3.53349394755079e-13!GO:0009057;macromolecule catabolic process;4.58915579111864e-13!GO:0030163;protein catabolic process;5.27227517674205e-13!GO:0051186;cofactor metabolic process;6.31295090833755e-13!GO:0005635;nuclear envelope;1.48221688271714e-12!GO:0004386;helicase activity;1.71903261286665e-12!GO:0051082;unfolded protein binding;2.12639694359149e-12!GO:0016887;ATPase activity;2.23486746985483e-12!GO:0044248;cellular catabolic process;2.37019208380973e-12!GO:0043412;biopolymer modification;3.01032070092377e-12!GO:0044455;mitochondrial membrane part;3.28732497702039e-12!GO:0006974;response to DNA damage stimulus;3.98354985225108e-12!GO:0031980;mitochondrial lumen;4.51108912872999e-12!GO:0005759;mitochondrial matrix;4.51108912872999e-12!GO:0003712;transcription cofactor activity;4.54195621632581e-12!GO:0042623;ATPase activity, coupled;5.02856626105103e-12!GO:0008565;protein transporter activity;5.20326610678949e-12!GO:0016604;nuclear body;7.60057775827938e-12!GO:0003743;translation initiation factor activity;1.18415918634998e-11!GO:0006913;nucleocytoplasmic transport;2.42733933096147e-11!GO:0005793;ER-Golgi intermediate compartment;3.28382322197242e-11!GO:0050794;regulation of cellular process;3.43607342513105e-11!GO:0051169;nuclear transport;4.32031219615807e-11!GO:0044453;nuclear membrane part;6.64474281991096e-11!GO:0016607;nuclear speck;7.68353111701929e-11!GO:0006464;protein modification process;1.01531007694167e-10!GO:0015934;large ribosomal subunit;1.12824847499898e-10!GO:0006732;coenzyme metabolic process;1.53115196784551e-10!GO:0008026;ATP-dependent helicase activity;2.40756918557052e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.60032379390706e-10!GO:0000375;RNA splicing, via transesterification reactions;2.60032379390706e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.60032379390706e-10!GO:0006413;translational initiation;2.60032379390706e-10!GO:0015935;small ribosomal subunit;2.92757411227211e-10!GO:0022402;cell cycle process;3.15062635903477e-10!GO:0043687;post-translational protein modification;3.68572247405646e-10!GO:0006281;DNA repair;4.56586142157849e-10!GO:0006461;protein complex assembly;4.63374829073146e-10!GO:0048523;negative regulation of cellular process;9.36843770744849e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.05918822503962e-09!GO:0005746;mitochondrial respiratory chain;1.21020534063489e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.71448738815894e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.74851793895972e-09!GO:0009719;response to endogenous stimulus;1.75171742410103e-09!GO:0006366;transcription from RNA polymerase II promoter;1.85856829713896e-09!GO:0006446;regulation of translational initiation;2.31815491714626e-09!GO:0008639;small protein conjugating enzyme activity;3.09152664931997e-09!GO:0005643;nuclear pore;3.25101224615565e-09!GO:0004842;ubiquitin-protein ligase activity;4.49037285667151e-09!GO:0019787;small conjugating protein ligase activity;5.40940715289228e-09!GO:0009259;ribonucleotide metabolic process;6.05033142142603e-09!GO:0030120;vesicle coat;6.32304442715134e-09!GO:0030662;coated vesicle membrane;6.32304442715134e-09!GO:0048475;coated membrane;6.62550188327476e-09!GO:0030117;membrane coat;6.62550188327476e-09!GO:0005789;endoplasmic reticulum membrane;6.96734494024838e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.19527159923671e-09!GO:0006888;ER to Golgi vesicle-mediated transport;1.43626233545711e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.64778494234754e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.64778494234754e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.64778494234754e-08!GO:0050136;NADH dehydrogenase (quinone) activity;2.01637701933984e-08!GO:0003954;NADH dehydrogenase activity;2.01637701933984e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.01637701933984e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.02464109656178e-08!GO:0012501;programmed cell death;2.02862340145519e-08!GO:0042254;ribosome biogenesis and assembly;2.02862340145519e-08!GO:0016564;transcription repressor activity;2.11332284499125e-08!GO:0043038;amino acid activation;2.18348585036402e-08!GO:0006418;tRNA aminoacylation for protein translation;2.18348585036402e-08!GO:0043039;tRNA aminoacylation;2.18348585036402e-08!GO:0005768;endosome;2.5068033736783e-08!GO:0006399;tRNA metabolic process;3.04530513121151e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.37680469343012e-08!GO:0050789;regulation of biological process;3.39192693789392e-08!GO:0006403;RNA localization;3.49314444925783e-08!GO:0009060;aerobic respiration;3.70081712657997e-08!GO:0009055;electron carrier activity;3.71792616903562e-08!GO:0006915;apoptosis;4.2032662991671e-08!GO:0016881;acid-amino acid ligase activity;4.34809593460342e-08!GO:0017038;protein import;4.8248059288145e-08!GO:0003714;transcription corepressor activity;5.03457867586172e-08!GO:0009150;purine ribonucleotide metabolic process;5.09394103006231e-08!GO:0050657;nucleic acid transport;5.63581900264613e-08!GO:0051236;establishment of RNA localization;5.63581900264613e-08!GO:0050658;RNA transport;5.63581900264613e-08!GO:0006163;purine nucleotide metabolic process;5.7142966152353e-08!GO:0048519;negative regulation of biological process;5.9009248005671e-08!GO:0045333;cellular respiration;5.9009248005671e-08!GO:0005788;endoplasmic reticulum lumen;6.57870997033486e-08!GO:0006260;DNA replication;7.15318947774192e-08!GO:0005798;Golgi-associated vesicle;8.05976463065079e-08!GO:0008219;cell death;8.69905775805157e-08!GO:0016265;death;8.69905775805157e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.9638536781363e-08!GO:0046930;pore complex;1.1504277541538e-07!GO:0016787;hydrolase activity;1.2066263602266e-07!GO:0051726;regulation of cell cycle;1.27612530823258e-07!GO:0009260;ribonucleotide biosynthetic process;1.34811296026978e-07!GO:0009056;catabolic process;1.3890620574011e-07!GO:0051276;chromosome organization and biogenesis;1.50717521572177e-07!GO:0008092;cytoskeletal protein binding;1.53930411344038e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.59647747929741e-07!GO:0000074;regulation of progression through cell cycle;1.92695801048421e-07!GO:0000278;mitotic cell cycle;2.13588553612172e-07!GO:0065002;intracellular protein transport across a membrane;2.37543486447913e-07!GO:0030964;NADH dehydrogenase complex (quinone);2.7163757418874e-07!GO:0045271;respiratory chain complex I;2.7163757418874e-07!GO:0005747;mitochondrial respiratory chain complex I;2.7163757418874e-07!GO:0031324;negative regulation of cellular metabolic process;2.8581831694974e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.0390556721673e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.0724465059512e-07!GO:0030036;actin cytoskeleton organization and biogenesis;3.17768740634008e-07!GO:0006164;purine nucleotide biosynthetic process;3.44950702745645e-07!GO:0006099;tricarboxylic acid cycle;3.52936507565393e-07!GO:0046356;acetyl-CoA catabolic process;3.52936507565393e-07!GO:0042775;organelle ATP synthesis coupled electron transport;3.52936507565393e-07!GO:0042773;ATP synthesis coupled electron transport;3.52936507565393e-07!GO:0051187;cofactor catabolic process;3.75582521922601e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.95910690498969e-07!GO:0015986;ATP synthesis coupled proton transport;4.7990540896615e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.7990540896615e-07!GO:0009109;coenzyme catabolic process;5.5588868739879e-07!GO:0015630;microtubule cytoskeleton;5.8183094302062e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.85041046736447e-07!GO:0006323;DNA packaging;7.16735108850312e-07!GO:0009141;nucleoside triphosphate metabolic process;7.3186622984003e-07!GO:0051170;nuclear import;7.41634920266079e-07!GO:0003724;RNA helicase activity;8.14134396745275e-07!GO:0046034;ATP metabolic process;8.21522409699786e-07!GO:0009892;negative regulation of metabolic process;9.11701067517871e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.11701067517871e-07!GO:0009144;purine nucleoside triphosphate metabolic process;9.11701067517871e-07!GO:0031988;membrane-bound vesicle;9.12827120999568e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.6608484047323e-07!GO:0006084;acetyl-CoA metabolic process;1.03106764842339e-06!GO:0043566;structure-specific DNA binding;1.06030611408419e-06!GO:0019222;regulation of metabolic process;1.11657594275396e-06!GO:0006606;protein import into nucleus;1.13411115150762e-06!GO:0007010;cytoskeleton organization and biogenesis;1.37084364328677e-06!GO:0008361;regulation of cell size;1.47148855437804e-06!GO:0016568;chromatin modification;1.55785678550527e-06!GO:0051028;mRNA transport;1.7029482979883e-06!GO:0044431;Golgi apparatus part;1.7491731597653e-06!GO:0003924;GTPase activity;1.7491731597653e-06!GO:0031252;leading edge;1.84626443604193e-06!GO:0030029;actin filament-based process;1.87250270111843e-06!GO:0000151;ubiquitin ligase complex;2.05258981491337e-06!GO:0005773;vacuole;2.30035952075445e-06!GO:0005761;mitochondrial ribosome;2.61223560745297e-06!GO:0000313;organellar ribosome;2.61223560745297e-06!GO:0016049;cell growth;2.8109719393916e-06!GO:0005813;centrosome;3.34000710096864e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.79565788551893e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.8855465638759e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.8855465638759e-06!GO:0051789;response to protein stimulus;4.33732700594033e-06!GO:0006986;response to unfolded protein;4.33732700594033e-06!GO:0051188;cofactor biosynthetic process;4.38668027161694e-06!GO:0019829;cation-transporting ATPase activity;4.42371767428874e-06!GO:0031982;vesicle;4.47449194397773e-06!GO:0031410;cytoplasmic vesicle;5.04495707488614e-06!GO:0003697;single-stranded DNA binding;5.08904293238179e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.52598243768364e-06!GO:0032446;protein modification by small protein conjugation;5.7252718833603e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.73001933990827e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.08748120943654e-06!GO:0044440;endosomal part;6.33673241466348e-06!GO:0010008;endosome membrane;6.33673241466348e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.69228822389109e-06!GO:0006754;ATP biosynthetic process;7.37100961853654e-06!GO:0006753;nucleoside phosphate metabolic process;7.37100961853654e-06!GO:0016567;protein ubiquitination;8.4286223892836e-06!GO:0005815;microtubule organizing center;8.75128297296329e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.80580216163862e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.80580216163862e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.80580216163862e-06!GO:0006752;group transfer coenzyme metabolic process;9.90454499834288e-06!GO:0005667;transcription factor complex;1.15205137145375e-05!GO:0005770;late endosome;1.87569577698399e-05!GO:0045786;negative regulation of progression through cell cycle;1.88922493466665e-05!GO:0016481;negative regulation of transcription;2.0357876830604e-05!GO:0016491;oxidoreductase activity;2.04626355441273e-05!GO:0019899;enzyme binding;2.04626355441273e-05!GO:0000323;lytic vacuole;2.04626355441273e-05!GO:0005764;lysosome;2.04626355441273e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.04626355441273e-05!GO:0006613;cotranslational protein targeting to membrane;2.50764788738182e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.62031410625486e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.77838651023838e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.18937197867982e-05!GO:0016853;isomerase activity;3.19403811012786e-05!GO:0005694;chromosome;3.21465015050932e-05!GO:0030133;transport vesicle;3.33921645309404e-05!GO:0051246;regulation of protein metabolic process;3.33977788317128e-05!GO:0008186;RNA-dependent ATPase activity;3.47346534635512e-05!GO:0022403;cell cycle phase;3.57248693787915e-05!GO:0003713;transcription coactivator activity;3.92570929262094e-05!GO:0005791;rough endoplasmic reticulum;4.13076377902706e-05!GO:0006793;phosphorus metabolic process;4.15383303847932e-05!GO:0006796;phosphate metabolic process;4.15383303847932e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.33910789644596e-05!GO:0043069;negative regulation of programmed cell death;4.50211599207202e-05!GO:0065007;biological regulation;4.80362809164801e-05!GO:0009117;nucleotide metabolic process;5.03019445006449e-05!GO:0051301;cell division;5.08010626096571e-05!GO:0006364;rRNA processing;5.36751834617152e-05!GO:0016563;transcription activator activity;5.51531885658261e-05!GO:0009108;coenzyme biosynthetic process;5.77862131819039e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.0449807139901e-05!GO:0001558;regulation of cell growth;6.23887279924386e-05!GO:0003779;actin binding;6.53512140480053e-05!GO:0016859;cis-trans isomerase activity;6.5495031741926e-05!GO:0043623;cellular protein complex assembly;7.32497360682047e-05!GO:0005769;early endosome;7.59120751707875e-05!GO:0044262;cellular carbohydrate metabolic process;7.74717567664287e-05!GO:0005905;coated pit;7.77578272151156e-05!GO:0043066;negative regulation of apoptosis;8.16328841507071e-05!GO:0016310;phosphorylation;8.27561145500437e-05!GO:0043067;regulation of programmed cell death;8.90919624930842e-05!GO:0031323;regulation of cellular metabolic process;9.09228483278184e-05!GO:0019867;outer membrane;9.74867612378713e-05!GO:0016740;transferase activity;9.76863813318935e-05!GO:0005839;proteasome core complex (sensu Eukaryota);0.000105592569543861!GO:0016072;rRNA metabolic process;0.000107086757434877!GO:0030663;COPI coated vesicle membrane;0.000107410533784699!GO:0030126;COPI vesicle coat;0.000107410533784699!GO:0004004;ATP-dependent RNA helicase activity;0.000108279714648994!GO:0006891;intra-Golgi vesicle-mediated transport;0.000109276718027555!GO:0042981;regulation of apoptosis;0.00010979637888701!GO:0030867;rough endoplasmic reticulum membrane;0.000115486809101322!GO:0006916;anti-apoptosis;0.000128238875725294!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000134814953052694!GO:0016363;nuclear matrix;0.000134814953052694!GO:0065004;protein-DNA complex assembly;0.000135758618453058!GO:0000087;M phase of mitotic cell cycle;0.000139484653755188!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000140421987155578!GO:0008654;phospholipid biosynthetic process;0.000144389365780442!GO:0007067;mitosis;0.000154257668310666!GO:0031968;organelle outer membrane;0.000164639388515508!GO:0048471;perinuclear region of cytoplasm;0.000183194902124906!GO:0000245;spliceosome assembly;0.000183758644517263!GO:0003690;double-stranded DNA binding;0.00021551802582124!GO:0006612;protein targeting to membrane;0.000224493459914452!GO:0030137;COPI-coated vesicle;0.000228960544391166!GO:0000059;protein import into nucleus, docking;0.00023307782473585!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000245568861508508!GO:0000139;Golgi membrane;0.000249058081408297!GO:0051427;hormone receptor binding;0.000251657786560894!GO:0045259;proton-transporting ATP synthase complex;0.000254092959328427!GO:0005525;GTP binding;0.000283934249425171!GO:0006350;transcription;0.00029607099742721!GO:0006091;generation of precursor metabolites and energy;0.000301980138016468!GO:0033116;ER-Golgi intermediate compartment membrane;0.000311579875860181!GO:0007005;mitochondrion organization and biogenesis;0.000332434996214279!GO:0051168;nuclear export;0.000339576442109596!GO:0030532;small nuclear ribonucleoprotein complex;0.000398058324853138!GO:0005885;Arp2/3 protein complex;0.000401965427165161!GO:0051325;interphase;0.000408333624112906!GO:0007050;cell cycle arrest;0.000414600075118849!GO:0051329;interphase of mitotic cell cycle;0.000434650335614862!GO:0035257;nuclear hormone receptor binding;0.000457261725589858!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000460457501116079!GO:0004576;oligosaccharyl transferase activity;0.000481508211772523!GO:0004177;aminopeptidase activity;0.0005052474842941!GO:0004298;threonine endopeptidase activity;0.000509604766446467!GO:0006333;chromatin assembly or disassembly;0.00054906765677633!GO:0008250;oligosaccharyl transferase complex;0.000568046347576147!GO:0006892;post-Golgi vesicle-mediated transport;0.000592484207492023!GO:0030658;transport vesicle membrane;0.000600083840815598!GO:0044427;chromosomal part;0.00063409531647359!GO:0043021;ribonucleoprotein binding;0.000672176482033785!GO:0005048;signal sequence binding;0.000702023301022212!GO:0016779;nucleotidyltransferase activity;0.000735359774271826!GO:0045045;secretory pathway;0.000778824988731549!GO:0010468;regulation of gene expression;0.000816162581142301!GO:0030127;COPII vesicle coat;0.000895595051075658!GO:0012507;ER to Golgi transport vesicle membrane;0.000895595051075658!GO:0030134;ER to Golgi transport vesicle;0.000928663627090791!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00095723412851634!GO:0005819;spindle;0.00096295258000882!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100814635549882!GO:0003678;DNA helicase activity;0.00100945943864435!GO:0016197;endosome transport;0.00108265703973961!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00111533264226659!GO:0032561;guanyl ribonucleotide binding;0.00124658768296905!GO:0019001;guanyl nucleotide binding;0.00124658768296905!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00126333134168651!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00128319089693548!GO:0015399;primary active transmembrane transporter activity;0.00128319089693548!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00129829009381969!GO:0001726;ruffle;0.0013115704603095!GO:0005741;mitochondrial outer membrane;0.0013174733548678!GO:0045892;negative regulation of transcription, DNA-dependent;0.00138121952716122!GO:0019752;carboxylic acid metabolic process;0.00143267217280747!GO:0015631;tubulin binding;0.00155662310773566!GO:0003729;mRNA binding;0.00157147197965851!GO:0051920;peroxiredoxin activity;0.00157737860058737!GO:0030118;clathrin coat;0.00176210381555387!GO:0006082;organic acid metabolic process;0.00179671577038104!GO:0030521;androgen receptor signaling pathway;0.00198453960495602!GO:0016044;membrane organization and biogenesis;0.00208849555490591!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00211731605128622!GO:0030660;Golgi-associated vesicle membrane;0.00212674215853585!GO:0045454;cell redox homeostasis;0.00218578555995839!GO:0030518;steroid hormone receptor signaling pathway;0.00237260317328245!GO:0007243;protein kinase cascade;0.00239384558998098!GO:0005581;collagen;0.00243167950682416!GO:0044420;extracellular matrix part;0.00265793768297192!GO:0018196;peptidyl-asparagine modification;0.00276320776719902!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00276320776719902!GO:0006261;DNA-dependent DNA replication;0.00283922351595383!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00286155136162668!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00294268073107194!GO:0040008;regulation of growth;0.00307160891112465!GO:0048500;signal recognition particle;0.00314805927254307!GO:0007030;Golgi organization and biogenesis;0.00326447979137227!GO:0065009;regulation of a molecular function;0.00327447550748444!GO:0032774;RNA biosynthetic process;0.00332083888462791!GO:0006402;mRNA catabolic process;0.00334530683954829!GO:0030659;cytoplasmic vesicle membrane;0.00343597219659593!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00347991947702244!GO:0007264;small GTPase mediated signal transduction;0.00355974646567726!GO:0006351;transcription, DNA-dependent;0.00361122364166401!GO:0000279;M phase;0.00364020714661651!GO:0008047;enzyme activator activity;0.00397075893527001!GO:0046483;heterocycle metabolic process;0.00410758752893452!GO:0046914;transition metal ion binding;0.00416585094170708!GO:0030132;clathrin coat of coated pit;0.00463607203344618!GO:0046489;phosphoinositide biosynthetic process;0.00464989789697408!GO:0035258;steroid hormone receptor binding;0.00465639214522749!GO:0008022;protein C-terminus binding;0.00482981716927101!GO:0008270;zinc ion binding;0.00499762480151276!GO:0051052;regulation of DNA metabolic process;0.00504113603975911!GO:0051128;regulation of cellular component organization and biogenesis;0.00524140399654874!GO:0004674;protein serine/threonine kinase activity;0.00529383114052132!GO:0031072;heat shock protein binding;0.00538034706516634!GO:0048487;beta-tubulin binding;0.00554122091246683!GO:0043284;biopolymer biosynthetic process;0.00555546520561825!GO:0030027;lamellipodium;0.00555602572418572!GO:0008094;DNA-dependent ATPase activity;0.00564110398746906!GO:0000785;chromatin;0.00592156451108372!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00608955605627091!GO:0045047;protein targeting to ER;0.00608955605627091!GO:0051252;regulation of RNA metabolic process;0.00619800860499518!GO:0046474;glycerophospholipid biosynthetic process;0.006274036691903!GO:0005595;collagen type XII;0.00643003509002725!GO:0003746;translation elongation factor activity;0.00652979845396918!GO:0006302;double-strand break repair;0.00658602824577729!GO:0044433;cytoplasmic vesicle part;0.00659106646549536!GO:0008139;nuclear localization sequence binding;0.00680597560852926!GO:0051287;NAD binding;0.00683030808559636!GO:0006289;nucleotide-excision repair;0.00687930512552537!GO:0050662;coenzyme binding;0.00691035768375029!GO:0003711;transcription elongation regulator activity;0.00691035768375029!GO:0003684;damaged DNA binding;0.00702087554532046!GO:0000049;tRNA binding;0.00710099651989501!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00710099651989501!GO:0043492;ATPase activity, coupled to movement of substances;0.00730041946113791!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00775704867777054!GO:0005583;fibrillar collagen;0.00781136210106882!GO:0006310;DNA recombination;0.00791461009341128!GO:0044452;nucleolar part;0.00817630532422874!GO:0008610;lipid biosynthetic process;0.00829408258629713!GO:0005874;microtubule;0.00842502642394082!GO:0006414;translational elongation;0.00847539138977275!GO:0048522;positive regulation of cellular process;0.00857091855704756!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00863800336605801!GO:0008180;signalosome;0.00873343219219023!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00891221010675659!GO:0012506;vesicle membrane;0.00891221010675659!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00893625940431994!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00896086222415422!GO:0016126;sterol biosynthetic process;0.00929655510153632!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00989827814960233!GO:0017166;vinculin binding;0.00990769306554374!GO:0045449;regulation of transcription;0.00991712910416281!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00995369256437212!GO:0007040;lysosome organization and biogenesis;0.0100387617199952!GO:0006383;transcription from RNA polymerase III promoter;0.0100461660091731!GO:0016251;general RNA polymerase II transcription factor activity;0.0101886226109089!GO:0006352;transcription initiation;0.0102082895311682!GO:0031901;early endosome membrane;0.01063546650798!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106365355807465!GO:0016408;C-acyltransferase activity;0.0107693623495456!GO:0009165;nucleotide biosynthetic process;0.0110807101672572!GO:0048468;cell development;0.0111307374791941!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0112228832184369!GO:0005856;cytoskeleton;0.0113168574096799!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0114301992032225!GO:0032940;secretion by cell;0.0118759148238012!GO:0045639;positive regulation of myeloid cell differentiation;0.0119795559309856!GO:0000209;protein polyubiquitination;0.0120505496271217!GO:0005869;dynactin complex;0.0126285074467273!GO:0008234;cysteine-type peptidase activity;0.0126780886839558!GO:0007265;Ras protein signal transduction;0.0126872384891996!GO:0006839;mitochondrial transport;0.0128855380650903!GO:0008312;7S RNA binding;0.0128855380650903!GO:0007034;vacuolar transport;0.0128897932018297!GO:0003682;chromatin binding;0.0133768646692039!GO:0031124;mRNA 3'-end processing;0.0137440320905679!GO:0005862;muscle thin filament tropomyosin;0.0138304137723298!GO:0030522;intracellular receptor-mediated signaling pathway;0.0138413103602886!GO:0005096;GTPase activator activity;0.0146142026900981!GO:0009112;nucleobase metabolic process;0.0147036390051119!GO:0006897;endocytosis;0.0147036390051119!GO:0010324;membrane invagination;0.0147036390051119!GO:0015992;proton transport;0.0148099977100174!GO:0031902;late endosome membrane;0.0149446351245336!GO:0005938;cell cortex;0.015100237194449!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.015138278432401!GO:0006635;fatty acid beta-oxidation;0.0151694085102412!GO:0000096;sulfur amino acid metabolic process;0.0151775430070681!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.015276801055728!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.015276801055728!GO:0006818;hydrogen transport;0.015689589004672!GO:0005832;chaperonin-containing T-complex;0.0158389755168798!GO:0005801;cis-Golgi network;0.0158389755168798!GO:0007160;cell-matrix adhesion;0.0159736792729118!GO:0001527;microfibril;0.0159736792729118!GO:0006607;NLS-bearing substrate import into nucleus;0.0159850171590465!GO:0050681;androgen receptor binding;0.0162642677778596!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0170512565260823!GO:0007033;vacuole organization and biogenesis;0.0173881870750993!GO:0051087;chaperone binding;0.0179658540008897!GO:0005774;vacuolar membrane;0.0181327872810002!GO:0000075;cell cycle checkpoint;0.0181814550957999!GO:0030176;integral to endoplasmic reticulum membrane;0.0181814550957999!GO:0008652;amino acid biosynthetic process;0.0182921457629885!GO:0003899;DNA-directed RNA polymerase activity;0.0186261379701566!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0187456625691547!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0187456625691547!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0187456625691547!GO:0033559;unsaturated fatty acid metabolic process;0.0191595055858228!GO:0006636;unsaturated fatty acid biosynthetic process;0.0191595055858228!GO:0051539;4 iron, 4 sulfur cluster binding;0.0192296104081264!GO:0032984;macromolecular complex disassembly;0.0202080134016644!GO:0031589;cell-substrate adhesion;0.0202080134016644!GO:0031418;L-ascorbic acid binding;0.0202258518958564!GO:0007041;lysosomal transport;0.0206242968571656!GO:0006334;nucleosome assembly;0.0206264183411328!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0208335039309417!GO:0006650;glycerophospholipid metabolic process;0.0212997087124231!GO:0050811;GABA receptor binding;0.0216704510897444!GO:0006405;RNA export from nucleus;0.0216704510897444!GO:0000082;G1/S transition of mitotic cell cycle;0.0218478880812366!GO:0031529;ruffle organization and biogenesis;0.0218478880812366!GO:0016790;thiolester hydrolase activity;0.0221113078238968!GO:0030119;AP-type membrane coat adaptor complex;0.0222121429233732!GO:0019843;rRNA binding;0.0224958092835487!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0226031249234019!GO:0043488;regulation of mRNA stability;0.0226707865612378!GO:0043487;regulation of RNA stability;0.0226707865612378!GO:0032200;telomere organization and biogenesis;0.0227899820735417!GO:0000723;telomere maintenance;0.0227899820735417!GO:0046467;membrane lipid biosynthetic process;0.02339514209966!GO:0006497;protein amino acid lipidation;0.02391363410513!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0240141897632724!GO:0031497;chromatin assembly;0.0240141897632724!GO:0006355;regulation of transcription, DNA-dependent;0.0247345600779845!GO:0007006;mitochondrial membrane organization and biogenesis;0.0250343691245397!GO:0048037;cofactor binding;0.0250343691245397!GO:0006509;membrane protein ectodomain proteolysis;0.0250351344637661!GO:0033619;membrane protein proteolysis;0.0250351344637661!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0252570205724534!GO:0030125;clathrin vesicle coat;0.0257719048034557!GO:0030665;clathrin coated vesicle membrane;0.0257719048034557!GO:0005591;collagen type VIII;0.025898081766566!GO:0005598;short-chain collagen;0.025898081766566!GO:0051540;metal cluster binding;0.025898081766566!GO:0051536;iron-sulfur cluster binding;0.025898081766566!GO:0030384;phosphoinositide metabolic process;0.0261703281791691!GO:0031625;ubiquitin protein ligase binding;0.0262245106337672!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.026580323069061!GO:0006007;glucose catabolic process;0.0267538357598731!GO:0006354;RNA elongation;0.0273970718619007!GO:0015629;actin cytoskeleton;0.0277368012174628!GO:0050790;regulation of catalytic activity;0.0277368012174628!GO:0005586;collagen type III;0.027921901632264!GO:0030131;clathrin adaptor complex;0.028045101068619!GO:0000287;magnesium ion binding;0.0282650431676999!GO:0004003;ATP-dependent DNA helicase activity;0.0283828205889756!GO:0005762;mitochondrial large ribosomal subunit;0.0284078293406011!GO:0000315;organellar large ribosomal subunit;0.0284078293406011!GO:0043087;regulation of GTPase activity;0.0284678536686065!GO:0008154;actin polymerization and/or depolymerization;0.0284678536686065!GO:0019798;procollagen-proline dioxygenase activity;0.0288512386283063!GO:0046519;sphingoid metabolic process;0.0288915103670767!GO:0043624;cellular protein complex disassembly;0.0292719611303946!GO:0043241;protein complex disassembly;0.0293534585286665!GO:0048144;fibroblast proliferation;0.0301423729187108!GO:0048145;regulation of fibroblast proliferation;0.0301423729187108!GO:0004527;exonuclease activity;0.0301423729187108!GO:0045792;negative regulation of cell size;0.0311615228586033!GO:0045941;positive regulation of transcription;0.0312617906926375!GO:0043022;ribosome binding;0.0313872590937264!GO:0006378;mRNA polyadenylation;0.0317073765299881!GO:0006376;mRNA splice site selection;0.0317197673619203!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0317197673619203!GO:0006338;chromatin remodeling;0.031823033811657!GO:0019783;small conjugating protein-specific protease activity;0.0321563939066413!GO:0016301;kinase activity;0.032249503298195!GO:0042802;identical protein binding;0.0322904557689748!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0323989013309667!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0326658791498602!GO:0004843;ubiquitin-specific protease activity;0.0327002862627194!GO:0031123;RNA 3'-end processing;0.033339656462261!GO:0003702;RNA polymerase II transcription factor activity;0.033339656462261!GO:0031543;peptidyl-proline dioxygenase activity;0.0335942659603061!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0335942659603061!GO:0000781;chromosome, telomeric region;0.0344225075578169!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0344728783026047!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0344728783026047!GO:0035035;histone acetyltransferase binding;0.0344854310731211!GO:0043495;protein anchor;0.0345697559167505!GO:0048146;positive regulation of fibroblast proliferation;0.0347887032422573!GO:0019318;hexose metabolic process;0.0349418242527031!GO:0033673;negative regulation of kinase activity;0.0349687190404686!GO:0006469;negative regulation of protein kinase activity;0.0349687190404686!GO:0007004;telomere maintenance via telomerase;0.0352840234253079!GO:0008601;protein phosphatase type 2A regulator activity;0.0353380848660489!GO:0008033;tRNA processing;0.0364630563788847!GO:0006401;RNA catabolic process;0.0369869888959567!GO:0051271;negative regulation of cell motility;0.0369911187164461!GO:0006979;response to oxidative stress;0.0369911187164461!GO:0007021;tubulin folding;0.0389547725882091!GO:0000339;RNA cap binding;0.0390507982645832!GO:0042585;germinal vesicle;0.0393372906228262!GO:0044437;vacuolar part;0.0395396661601318!GO:0005996;monosaccharide metabolic process;0.0395436313699433!GO:0006740;NADPH regeneration;0.0396212851578796!GO:0006098;pentose-phosphate shunt;0.0396212851578796!GO:0005083;small GTPase regulator activity;0.0401633592859384!GO:0008320;protein transmembrane transporter activity;0.0404800230992557!GO:0009967;positive regulation of signal transduction;0.0405905520574831!GO:0030308;negative regulation of cell growth;0.0406622330114976!GO:0008147;structural constituent of bone;0.0408523409979839!GO:0051348;negative regulation of transferase activity;0.0409899133642478!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0409899133642478!GO:0003756;protein disulfide isomerase activity;0.0411360833395073!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0411360833395073!GO:0006695;cholesterol biosynthetic process;0.0412352766768048!GO:0006611;protein export from nucleus;0.0413531429180504!GO:0030433;ER-associated protein catabolic process;0.041369585566484!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.041369585566484!GO:0000776;kinetochore;0.0422355684995014!GO:0043433;negative regulation of transcription factor activity;0.0423025546326915!GO:0006984;ER-nuclear signaling pathway;0.0423854928729165!GO:0005099;Ras GTPase activator activity;0.0440182842278669!GO:0001725;stress fiber;0.0441175183774934!GO:0032432;actin filament bundle;0.0441175183774934!GO:0000902;cell morphogenesis;0.044859000530959!GO:0032989;cellular structure morphogenesis;0.044859000530959!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0449221830963805!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0449575789385172!GO:0033043;regulation of organelle organization and biogenesis;0.0449575789385172!GO:0007052;mitotic spindle organization and biogenesis;0.0453534794756919!GO:0004221;ubiquitin thiolesterase activity;0.0453534794756919!GO:0030140;trans-Golgi network transport vesicle;0.0459811896370216!GO:0000314;organellar small ribosomal subunit;0.0461025660880784!GO:0005763;mitochondrial small ribosomal subunit;0.0461025660880784!GO:0005520;insulin-like growth factor binding;0.0464330165622078!GO:0000118;histone deacetylase complex;0.048552376010498!GO:0003923;GPI-anchor transamidase activity;0.0485585269897102!GO:0016255;attachment of GPI anchor to protein;0.0485585269897102!GO:0042765;GPI-anchor transamidase complex;0.0485585269897102!GO:0008484;sulfuric ester hydrolase activity;0.0486868051605747!GO:0005684;U2-dependent spliceosome;0.0491296605810919!GO:0000097;sulfur amino acid biosynthetic process;0.0494637841289505!GO:0008017;microtubule binding;0.0497173734166475!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0499590181394429
|sample_id=14320
|sample_id=14320
|sample_note=
|sample_note=
Line 75: Line 104:
|sample_tissue=breast
|sample_tissue=breast
|top_motifs=HIF1A:2.65728853995;EVI1:2.20325154425;NKX3-1:2.20197105827;ALX4:2.12238060941;FOXA2:2.03616632584;EN1,2:2.00955979416;GCM1,2:1.95017703335;HBP1_HMGB_SSRP1_UBTF:1.86575403062;ADNP_IRX_SIX_ZHX:1.81692508579;HMGA1,2:1.81267622787;TEAD1:1.79476556309;XBP1:1.78750329886;FOXL1:1.77112968919;NKX2-1,4:1.67196882956;MYBL2:1.67072724872;SRF:1.60993072813;TAL1_TCF{3,4,12}:1.57836270802;NFATC1..3:1.57212902723;GLI1..3:1.45552094964;NR3C1:1.43855179755;GZF1:1.41480624075;HMX1:1.41430737453;ZNF238:1.40442284379;IKZF1:1.37472884864;ATF6:1.31838499531;MAFB:1.28145492229;NKX3-2:1.27234331958;TBX4,5:1.21679554282;MAZ:1.1923821225;SMAD1..7,9:1.15275157092;UFEwm:1.13146330823;HOX{A6,A7,B6,B7}:1.09218869644;STAT1,3:1.06184682667;HES1:1.06060823812;GATA4:1.05098223199;TP53:1.01267858751;MTE{core}:1.00813229219;NFE2L1:1.00640978744;HOX{A4,D4}:0.975171012902;TFAP4:0.954065814063;TLX1..3_NFIC{dimer}:0.953128528515;NFIX:0.92866024987;HOX{A5,B5}:0.913842854251;MEF2{A,B,C,D}:0.913526339308;GFI1B:0.896216134778;MZF1:0.865836045094;PITX1..3:0.850919277988;EBF1:0.849104960242;NANOG{mouse}:0.837434218611;ESR1:0.83613842188;T:0.833175548555;SOX17:0.815334322984;NKX2-2,8:0.807538312725;GTF2I:0.782523468261;GTF2A1,2:0.767147168856;NFE2L2:0.762792685056;RXRA_VDR{dimer}:0.760318112212;PRDM1:0.741274173324;KLF4:0.724418515603;TEF:0.715069520093;SOX5:0.669058839005;HSF1,2:0.597362849478;NR6A1:0.594887833465;FOXP1:0.593055391666;TOPORS:0.582619744417;HLF:0.581964010007;TFAP2B:0.554503464068;ZNF384:0.541614233704;MYB:0.519474779503;PAX2:0.509631302289;RREB1:0.503343453157;ELK1,4_GABP{A,B1}:0.483862268;IKZF2:0.470612640778;TFDP1:0.463819846861;SPZ1:0.440014427396;HIC1:0.439062735215;DBP:0.419396579583;RXR{A,B,G}:0.417581240806;ZNF423:0.408944924707;AHR_ARNT_ARNT2:0.401801230344;FOXO1,3,4:0.397884033944;NHLH1,2:0.376825890271;ZNF148:0.325220412447;PAX5:0.316459460182;EP300:0.314692403737;FOX{I1,J2}:0.31000096877;AR:0.306440021203;XCPE1{core}:0.286482690372;PAX8:0.278112064154;SREBF1,2:0.274246809039;ZBTB16:0.267907158727;PATZ1:0.254195362496;ONECUT1,2:0.24475115045;GFI1:0.244606598642;SOX2:0.243105661039;TBP:0.230586328167;CREB1:0.208555412851;ZNF143:0.207763433135;ARID5B:0.202593059542;FOXN1:0.199012213185;STAT2,4,6:0.191364240684;NRF1:0.181742510205;TFAP2{A,C}:0.17392255704;CEBPA,B_DDIT3:0.168844271855;POU1F1:0.124285781449;TFCP2:0.100858250958;ATF4:0.0839093618093;PAX4:0.0794746280024;TLX2:0.0666099934763;EGR1..3:0.0636040558527;PAX1,9:0.0538626066986;ZIC1..3:0.0502266206944;NFE2:0.0381270921485;ATF5_CREB3:0.0366367166842;AIRE:0.0192976804425;FOX{D1,D2}:0.00584335007567;FOSL2:-0.013281326029;BACH2:-0.0255683569403;YY1:-0.0303134432624;ZFP161:-0.0330349398213;MED-1{core}:-0.0358566896643;HAND1,2:-0.0399538612614;FOS_FOS{B,L1}_JUN{B,D}:-0.0415240806576;BPTF:-0.0566075415379;SP1:-0.0578136097227;MYFfamily:-0.0714770851133;NKX2-3_NKX2-5:-0.0806234982363;LHX3,4:-0.0977554071065;IRF1,2:-0.108324034741;POU6F1:-0.124767392555;OCT4_SOX2{dimer}:-0.129543905332;POU3F1..4:-0.138637863202;RFX1:-0.156916449054;HNF1A:-0.168012536103;NKX6-1,2:-0.18478294262;LEF1_TCF7_TCF7L1,2:-0.191194172151;POU5F1:-0.206554447578;bHLH_family:-0.20657671381;TGIF1:-0.209344471459;DMAP1_NCOR{1,2}_SMARC:-0.23235097007;ELF1,2,4:-0.262477320746;MTF1:-0.263365704651;NR1H4:-0.284837840907;RUNX1..3:-0.292866747612;NFY{A,B,C}:-0.313737045729;E2F1..5:-0.327233277128;SOX{8,9,10}:-0.333002362203;JUN:-0.334588823358;CDC5L:-0.349939845488;ETS1,2:-0.357253377554;NANOG:-0.361608033957;PRRX1,2:-0.366373462496;ZBTB6:-0.385159053806;REST:-0.417098699586;SPI1:-0.431110249473;STAT5{A,B}:-0.436096950918;CUX2:-0.477926010649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520001814837;ATF2:-0.541111376199;CRX:-0.564225662455;HNF4A_NR2F1,2:-0.585675309798;NFKB1_REL_RELA:-0.59976395343;IRF7:-0.599965281493;FOXD3:-0.617850367825;SPIB:-0.619213105398;RFX2..5_RFXANK_RFXAP:-0.623231617436;PPARG:-0.625266937642;FOXP3:-0.734302337544;PDX1:-0.752407057553;GATA6:-0.753598221315;RORA:-0.76319436469;RBPJ:-0.765528934364;BREu{core}:-0.781222013712;PAX3,7:-0.816485657434;ALX1:-0.857645881858;NFIL3:-0.868238851548;SNAI1..3:-0.879743724096;ESRRA:-0.960583823521;CDX1,2,4:-0.967773919855;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01102376995;FOX{F1,F2,J1}:-1.06845651333;ZEB1:-1.08992342898;NR5A1,2:-1.13022609018;LMO2:-1.15438415951;FOXM1:-1.2147658422;PAX6:-1.2716088019;HOXA9_MEIS1:-1.36724137686;FOXQ1:-1.46027661861;VSX1,2:-1.47726062974;PBX1:-1.55828383418;POU2F1..3:-1.60322421784;MYOD1:-1.85996215585
|top_motifs=HIF1A:2.65728853995;EVI1:2.20325154425;NKX3-1:2.20197105827;ALX4:2.12238060941;FOXA2:2.03616632584;EN1,2:2.00955979416;GCM1,2:1.95017703335;HBP1_HMGB_SSRP1_UBTF:1.86575403062;ADNP_IRX_SIX_ZHX:1.81692508579;HMGA1,2:1.81267622787;TEAD1:1.79476556309;XBP1:1.78750329886;FOXL1:1.77112968919;NKX2-1,4:1.67196882956;MYBL2:1.67072724872;SRF:1.60993072813;TAL1_TCF{3,4,12}:1.57836270802;NFATC1..3:1.57212902723;GLI1..3:1.45552094964;NR3C1:1.43855179755;GZF1:1.41480624075;HMX1:1.41430737453;ZNF238:1.40442284379;IKZF1:1.37472884864;ATF6:1.31838499531;MAFB:1.28145492229;NKX3-2:1.27234331958;TBX4,5:1.21679554282;MAZ:1.1923821225;SMAD1..7,9:1.15275157092;UFEwm:1.13146330823;HOX{A6,A7,B6,B7}:1.09218869644;STAT1,3:1.06184682667;HES1:1.06060823812;GATA4:1.05098223199;TP53:1.01267858751;MTE{core}:1.00813229219;NFE2L1:1.00640978744;HOX{A4,D4}:0.975171012902;TFAP4:0.954065814063;TLX1..3_NFIC{dimer}:0.953128528515;NFIX:0.92866024987;HOX{A5,B5}:0.913842854251;MEF2{A,B,C,D}:0.913526339308;GFI1B:0.896216134778;MZF1:0.865836045094;PITX1..3:0.850919277988;EBF1:0.849104960242;NANOG{mouse}:0.837434218611;ESR1:0.83613842188;T:0.833175548555;SOX17:0.815334322984;NKX2-2,8:0.807538312725;GTF2I:0.782523468261;GTF2A1,2:0.767147168856;NFE2L2:0.762792685056;RXRA_VDR{dimer}:0.760318112212;PRDM1:0.741274173324;KLF4:0.724418515603;TEF:0.715069520093;SOX5:0.669058839005;HSF1,2:0.597362849478;NR6A1:0.594887833465;FOXP1:0.593055391666;TOPORS:0.582619744417;HLF:0.581964010007;TFAP2B:0.554503464068;ZNF384:0.541614233704;MYB:0.519474779503;PAX2:0.509631302289;RREB1:0.503343453157;ELK1,4_GABP{A,B1}:0.483862268;IKZF2:0.470612640778;TFDP1:0.463819846861;SPZ1:0.440014427396;HIC1:0.439062735215;DBP:0.419396579583;RXR{A,B,G}:0.417581240806;ZNF423:0.408944924707;AHR_ARNT_ARNT2:0.401801230344;FOXO1,3,4:0.397884033944;NHLH1,2:0.376825890271;ZNF148:0.325220412447;PAX5:0.316459460182;EP300:0.314692403737;FOX{I1,J2}:0.31000096877;AR:0.306440021203;XCPE1{core}:0.286482690372;PAX8:0.278112064154;SREBF1,2:0.274246809039;ZBTB16:0.267907158727;PATZ1:0.254195362496;ONECUT1,2:0.24475115045;GFI1:0.244606598642;SOX2:0.243105661039;TBP:0.230586328167;CREB1:0.208555412851;ZNF143:0.207763433135;ARID5B:0.202593059542;FOXN1:0.199012213185;STAT2,4,6:0.191364240684;NRF1:0.181742510205;TFAP2{A,C}:0.17392255704;CEBPA,B_DDIT3:0.168844271855;POU1F1:0.124285781449;TFCP2:0.100858250958;ATF4:0.0839093618093;PAX4:0.0794746280024;TLX2:0.0666099934763;EGR1..3:0.0636040558527;PAX1,9:0.0538626066986;ZIC1..3:0.0502266206944;NFE2:0.0381270921485;ATF5_CREB3:0.0366367166842;AIRE:0.0192976804425;FOX{D1,D2}:0.00584335007567;FOSL2:-0.013281326029;BACH2:-0.0255683569403;YY1:-0.0303134432624;ZFP161:-0.0330349398213;MED-1{core}:-0.0358566896643;HAND1,2:-0.0399538612614;FOS_FOS{B,L1}_JUN{B,D}:-0.0415240806576;BPTF:-0.0566075415379;SP1:-0.0578136097227;MYFfamily:-0.0714770851133;NKX2-3_NKX2-5:-0.0806234982363;LHX3,4:-0.0977554071065;IRF1,2:-0.108324034741;POU6F1:-0.124767392555;OCT4_SOX2{dimer}:-0.129543905332;POU3F1..4:-0.138637863202;RFX1:-0.156916449054;HNF1A:-0.168012536103;NKX6-1,2:-0.18478294262;LEF1_TCF7_TCF7L1,2:-0.191194172151;POU5F1:-0.206554447578;bHLH_family:-0.20657671381;TGIF1:-0.209344471459;DMAP1_NCOR{1,2}_SMARC:-0.23235097007;ELF1,2,4:-0.262477320746;MTF1:-0.263365704651;NR1H4:-0.284837840907;RUNX1..3:-0.292866747612;NFY{A,B,C}:-0.313737045729;E2F1..5:-0.327233277128;SOX{8,9,10}:-0.333002362203;JUN:-0.334588823358;CDC5L:-0.349939845488;ETS1,2:-0.357253377554;NANOG:-0.361608033957;PRRX1,2:-0.366373462496;ZBTB6:-0.385159053806;REST:-0.417098699586;SPI1:-0.431110249473;STAT5{A,B}:-0.436096950918;CUX2:-0.477926010649;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.520001814837;ATF2:-0.541111376199;CRX:-0.564225662455;HNF4A_NR2F1,2:-0.585675309798;NFKB1_REL_RELA:-0.59976395343;IRF7:-0.599965281493;FOXD3:-0.617850367825;SPIB:-0.619213105398;RFX2..5_RFXANK_RFXAP:-0.623231617436;PPARG:-0.625266937642;FOXP3:-0.734302337544;PDX1:-0.752407057553;GATA6:-0.753598221315;RORA:-0.76319436469;RBPJ:-0.765528934364;BREu{core}:-0.781222013712;PAX3,7:-0.816485657434;ALX1:-0.857645881858;NFIL3:-0.868238851548;SNAI1..3:-0.879743724096;ESRRA:-0.960583823521;CDX1,2,4:-0.967773919855;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01102376995;FOX{F1,F2,J1}:-1.06845651333;ZEB1:-1.08992342898;NR5A1,2:-1.13022609018;LMO2:-1.15438415951;FOXM1:-1.2147658422;PAX6:-1.2716088019;HOXA9_MEIS1:-1.36724137686;FOXQ1:-1.46027661861;VSX1,2:-1.47726062974;PBX1:-1.55828383418;POU2F1..3:-1.60322421784;MYOD1:-1.85996215585
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14320-155D9;search_select_hide=table117:FF:14320-155D9
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Preadipocyte - breast, donor2 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12584
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage40 years old adult
sexfemale
age40
cell typepreadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005354
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12584 CAGE DRX008041 DRR008913
Accession ID Hg19

Library idBAMCTSS
CNhs12584 DRZ000338 DRZ001723
Accession ID Hg38

Library idBAMCTSS
CNhs12584 DRZ011688 DRZ013073
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005354
sRNA-Seq  SAMD00005354
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10020 RNA-Seq DRX057108 DRR062867
SRhi10009.ACTTGA sRNA-Seq DRX036989 DRR041355
Accession ID Hg19

Library idBAMCTSS
RDhi10020 DRZ007943
SRhi10009.ACTTGA DRZ006997


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.2
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0289
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.237
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.062
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.13
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.954
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.208
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0124
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0511
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.116
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.953
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.654
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.519
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0394
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.062
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.76
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00458
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0737
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0109
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.156
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.366
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.575
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.417
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.844
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.404
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.783
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.203
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12584

Jaspar motifP-value
MA0002.20.0533
MA0003.10.186
MA0004.10.111
MA0006.10.484
MA0007.10.43
MA0009.10.249
MA0014.10.258
MA0017.10.00754
MA0018.20.164
MA0019.10.952
MA0024.10.0261
MA0025.10.0192
MA0027.10.706
MA0028.10.69
MA0029.10.166
MA0030.10.5
MA0031.10.295
MA0035.20.0014
MA0038.10.75
MA0039.20.0986
MA0040.10.46
MA0041.10.5
MA0042.10.846
MA0043.10.0553
MA0046.10.399
MA0047.20.834
MA0048.10.135
MA0050.10.00101
MA0051.10.00912
MA0052.10.154
MA0055.10.406
MA0057.10.76
MA0058.10.055
MA0059.10.125
MA0060.17.95889e-4
MA0061.12.43834e-4
MA0062.20.0643
MA0065.27.30523e-6
MA0066.10.282
MA0067.10.489
MA0068.10.444
MA0069.10.031
MA0070.10.605
MA0071.10.196
MA0072.10.41
MA0073.10.897
MA0074.10.0879
MA0076.10.737
MA0077.10.729
MA0078.10.362
MA0079.20.577
MA0080.21.25402e-7
MA0081.10.169
MA0083.18.29485e-4
MA0084.10.145
MA0087.10.51
MA0088.10.521
MA0090.13.0667e-9
MA0091.10.753
MA0092.10.43
MA0093.10.134
MA0099.20.00553
MA0100.10.7
MA0101.12.56962e-4
MA0102.20.957
MA0103.17.8004e-6
MA0104.26.25773e-4
MA0105.15.00352e-5
MA0106.10.898
MA0107.12.08694e-4
MA0108.20.0562
MA0111.10.146
MA0112.20.377
MA0113.10.931
MA0114.10.0091
MA0115.10.0179
MA0116.10.299
MA0117.10.795
MA0119.10.944
MA0122.10.497
MA0124.10.364
MA0125.10.748
MA0131.10.467
MA0135.10.525
MA0136.13.50799e-7
MA0137.20.843
MA0138.20.475
MA0139.10.0471
MA0140.10.231
MA0141.10.0422
MA0142.10.645
MA0143.10.567
MA0144.10.825
MA0145.10.598
MA0146.10.0248
MA0147.10.00249
MA0148.10.396
MA0149.10.421
MA0150.10.156
MA0152.10.0024
MA0153.10.895
MA0154.10.134
MA0155.10.325
MA0156.10.00144
MA0157.10.248
MA0159.10.254
MA0160.10.00391
MA0162.10.822
MA0163.10.0774
MA0164.10.84
MA0258.10.0941
MA0259.10.243



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12584

Novel motifP-value
10.154
100.499
1000.373
1010.417
1020.0145
1030.0617
1040.466
1050.195
1060.278
1070.73
1080.729
1090.0747
110.0797
1100.386
1110.271
1120.2
1130.897
1140.8
1150.698
1160.629
1170.0823
1180.0382
1190.4
120.6
1200.0297
1210.9
1220.0997
1230.223
1240.191
1250.592
1260.0405
1270.297
1280.318
1290.454
130.453
1300.775
1310.638
1320.733
1330.214
1340.406
1350.432
1360.561
1370.773
1380.385
1390.414
140.604
1400.843
1410.676
1420.506
1430.114
1440.861
1450.76
1460.0987
1470.223
1480.0775
1490.0775
150.175
1500.651
1510.366
1520.501
1530.171
1540.338
1554.55433e-4
1560.926
1570.238
1580.174
1590.539
160.822
1600.0926
1610.138
1620.78
1630.261
1640.976
1650.857
1660.205
1670.697
1680.6
1690.767
170.978
180.909
190.495
20.619
200.63
210.284
220.519
230.879
240.0396
250.104
260.456
270.213
280.806
290.196
30.542
300.676
310.532
321.05554e-5
330.475
340.66
350.11
360.097
370.764
380.306
390.54
40.445
400.0645
410.343
420.246
430.423
440.302
450.456
460.256
470.0817
480.473
490.166
50.799
500.793
510.291
520.962
530.548
540.674
550.0794
560.263
570.684
580.0639
590.0532
60.179
600.242
610.0573
620.0809
630.725
640.106
650.327
660.407
670.862
680.945
690.439
70.104
700.0773
710.258
720.305
730.777
740.429
750.112
760.574
770.966
780.167
790.0262
80.0375
800.88
810.856
820.401
830.646
840.122
850.6
860.712
870.581
880.763
890.471
90.758
900.887
910.66
920.68
930.538
940.361
950.584
960.708
970.412
980.041
990.388



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12584


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000139 (human preadipocyte of the breast sample)
0000406 (nuclear fraction sample)
0000671 (human Preadipocyte - breast, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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