FF:14332-155F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005544 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005544 | ||
|accession_numbers=CAGE;DRX008033;DRR008905;DRZ000330;DRZ001715;DRZ011680;DRZ013065 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036985;DRR041351;DRZ006993 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000408,FF:0000350,FF:0000058,FF:0000406,FF:0000666 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.96!238.34!OSR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!46.61!ZBTB38;;chr6:134210243..134210257,+!p1@TCF21!1.53!32.57!TCF21;;chr18:19749541..19749557,+!p1@GATA6!1.48!89.11!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.26!GATA6;;chr1:158985493..158985535,+!p4@IFI16!1.28!27.28!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.24!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.27!30.98!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.23!16.02!SOX17;;chr12:66218598..66218645,+!p2@HMGA2!1.21!69.12!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.08!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.19!134.79!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!1.19!14.43!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.21!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.16!13.51!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!1.15!124.60!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!1.14!34.43!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.14!22.38!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!1.13!64.75!HIF1A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.31!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.05!HAND2;;chr2:208030647..208030689,-!p1@KLF7!1.11!98.91!KLF7;;chr16:67881588..67881612,-!p2@CENPT!1.11!16.29!CENPT;;chr21:36260295..36260310,-!p3@RUNX1!1.09!18.40!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!1.09!17.21!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.07!146.44!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.84!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!1.05!22.64!ARID5B;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.96!BMP2;;chr11:65686732..65686756,+!p2@DRAP1!0.99!37.60!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!14.96!CREB3L1;;chr15:67418177..67418204,+!p9@SMAD3!0.98!8.47!SMAD3;;chr19:45971246..45971265,+!p1@FOSB!0.97!160.88!FOSB;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!98.51!PLAGL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.33!ZFPM2;;chr8:25902876..25902936,-!p1@EBF2!0.96!8.21!EBF2;;chr8:72756637..72756664,-!p3@MSC!0.95!9.14!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.81!IFI16;;chr7:64467057..64467078,-!p1@ZNF117!0.93!144.72!ZNF117;;chr8:93074803..93074845,-!p1@RUNX1T1!0.93!7.41!RUNX1T1;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.59!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.08!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.28!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.31!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.27!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.54!NCOA7;;chr6:144289132..144289134,-!p3@PLAGL1!0.90!16.55!PLAGL1;;chr9:128510454..128510469,+!p3@PBX3!0.90!9.14!PBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.90!6.89!ZNF560;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.75!BNC2;;chr10:63809134..63809145,+!p6@ARID5B!0.88!15.62!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.87!29.66!ZBTB20;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.28!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.87!6.49!HOXB3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!30.19!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.86!6.22!HAND2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.22!HOXC4;;chr19:52598958..52599026,-!p1@ZNF841!0.85!61.57!ZNF841;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.82!ZBTB38;;chr7:86782094..86782108,+!p5@DMTF1!0.85!10.06!DMTF1;;chr2:66662281..66662308,+!p1@MEIS1!0.84!21.85!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.96!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.55!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.83!6.62!TFAP2A;;chr1:59249688..59249703,-!p3@JUN!0.82!36.28!JUN;;chr3:187463179..187463201,-!p2@BCL6!0.82!24.76!BCL6;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.56!TBX20;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!310.37!NFKBIZ;;chr2:28618532..28618610,+!p4@FOSL2!0.81!9.80!FOSL2;;chr21:36260343..36260402,-!p6@RUNX1!0.81!9.14!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.81!9.00!PAWR;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.21!SATB2;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.41!EBF1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.43!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.81!5.43!ZBTB47;;chrX:128657457..128657475,-!p1@SMARCA1!0.80!66.73!SMARCA1;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chrX:77041657..77041668,-!p2@ATRX!0.79!11.12!ATRX;;chr7:113726357..113726443,+!p1@FOXP2!0.79!9.40!FOXP2;;chr5:72744445..72744466,-!p2@FOXD1!0.79!8.87!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.87!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.79!5.16!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.63!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.78!12.71!NFATC4;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr4:149365827..149365870,-!p5@NR3C2!0.78!5.03!NR3C2;;chr7:4815238..4815327,+!p1@KIAA0415!0.77!117.58!AP5Z1;;chr9:16870710..16870763,-!p1@BNC2!0.77!8.87!BNC2;;chr10:63809090..63809097,+!p7@ARID5B!0.77!7.02!ARID5B;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.09!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.90!GATA4;;chr1:170632250..170632277,+!p7@PRRX1!0.77!4.90!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!233.70!STAT2;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.27!RUNX1;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.25!IFI16;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.09!FOXF1;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr16:67881647..67881663,-!p3@CENPT!0.76!4.77!CENPT;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.75!13.77!ZFP112;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.15!HOXB4;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.56!FOXD1;;chr2:66662510..66662521,+!p6@MEIS1!0.75!4.63!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.74!730.63!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.54!ARID5B;;chr1:249153268..249153298,-!p1@ZNF692!0.74!26.48!ZNF692;;chr15:67418047..67418093,+!p4@SMAD3!0.74!5.83!SMAD3;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.50!OSR1;;chr2:66662396..66662407,+!p4@MEIS1!0.74!4.50!MEIS1;;chr3:141121871..141121885,+!p13@ZBTB38!0.73!4.37!ZBTB38;;chr12:72056800..72056834,+!p1@THAP2!0.72!5.96!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.72!5.16!IFI16;;chr3:141087339..141087387,+!p2@ZBTB38!0.71!47.40!ZBTB38;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.54!CREB1;;chr2:208030488..208030551,-!p3@KLF7!0.71!16.42!KLF7;;chrX:134478706..134478736,+!p1@ZNF449!0.71!14.96!ZNF449;;chr21:36259445..36259519,-!p4@RUNX1!0.71!12.71!RUNX1;;chr19:52956798..52956843,+!p1@ZNF578!0.71!8.87!ZNF578;;chr20:25677399..25677433,-!p3@ZNF337!0.71!8.47!ZNF337;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.94!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.43!STAT1;;chr4:149363494..149363543,-!p1@NR3C2!0.71!4.10!NR3C2;;chr8:72755987..72756002,-!p7@MSC!0.71!4.10!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.70!12.58!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!7.02!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.69!PRRX1;;chr7:1577111..1577132,+!p4@MAFK!0.70!4.63!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.97!RFX8;;chr13:45150455..45150472,-!p8@TSC22D1!0.70!3.97!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.69!8.87!VDR;;chr12:66218378..66218401,+!p6@HMGA2!0.69!6.36!HMGA2;;chr17:46621101..46621143,-!p7@HOXB2!0.69!5.43!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.68!235.42!STAT1;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.95!TSC22D1;;chr8:77593474..77593612,+!p1@ZFHX4!0.68!18.27!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.35!STAT6;;chr8:72756267..72756296,-!p4@MSC!0.68!5.83!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.68!4.24!SMAD3;;chr21:36260325..36260341,-!p14@RUNX1!0.68!3.84!RUNX1;;chr8:49833948..49833973,-!p2@SNAI2!0.67!27.01!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.67!12.98!AHRR;;chr7:17338266..17338282,+!p1@AHR!0.66!45.02!AHR;;chr19:52901094..52901134,+!p1@ZNF528!0.66!27.01!ZNF528;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.84!TWIST2;;chr12:133707172..133707202,+!p2@ZNF10!0.66!9.00!ZNF10;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.66!8.08!ZNF117;;chr19:57019215..57019250,+!p1@ZNF471!0.66!5.69!ZNF471;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.50!TBX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.66!3.58!HOXC5;;chr6:126112074..126112144,+!p1@NCOA7!0.65!54.29!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.65!38.66!IFI16;;chr5:138609782..138609826,+!p5@MATR3!0.65!26.08!MATR3;;chr6:126102292..126102329,+!p3@NCOA7!0.65!12.98!NCOA7;;chr18:3451646..3451691,+!p3@TGIF1!0.65!10.46!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.30!HMGA2;;chr18:19750951..19750980,+!p10@GATA6!0.65!3.44!GATA6;;chr22:21771656..21771662,+!p1@HIC2!0.65!3.44!HIC2;;chr2:185463247..185463263,+!p1@ZNF804A!0.64!6.49!ZNF804A;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.30!NFIX;;chr6:126240463..126240489,+!p6@NCOA7!0.64!3.84!NCOA7;;chr2:231191875..231191918,+!p1@SP140L!0.63!37.47!SP140L;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.63!23.97!SNAPC4;;chr19:44952635..44952668,-!p1@ZNF229!0.63!19.07!ZNF229;;chr2:66662249..66662267,+!p2@MEIS1!0.63!14.70!MEIS1;;chr19:12721790..12721810,+!p2@ZNF791!0.63!10.33!ZNF791;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr16:67198633..67198671,+!p1@HSF4!0.63!3.31!HSF4;;chr18:19749353..19749367,+!p4@GATA6!0.63!3.31!GATA6;;chr7:1577076..1577095,+!p5@MAFK!0.63!3.31!MAFK;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.02!MLLT11;;chr8:182424..182462,+!p1@ZNF596!0.62!9.40!ZNF596;;chr5:139487608..139487663,+!p3@PURA!0.62!7.68!PURA;;chr9:4299959..4299974,-!p4@GLIS3!0.62!5.43!GLIS3;;chr7:99156011..99156036,+!p7@ZNF655!0.62!3.84!ZNF655;;chr9:14314476..14314487,-!p9@NFIB!0.62!3.18!NFIB;;chr19:22193731..22193751,-!p1@ZNF208!0.62!3.18!ZNF208;;chr21:30671690..30671762,+!p2@BACH1!0.61!12.18!BACH1;;chr19:52391147..52391218,-!p1@ZNF577!0.61!10.99!ZNF577;;chr8:72756063..72756125,-!p1@MSC!0.61!7.02!MSC;;chr19:44598560..44598576,+!p3@ZNF224!0.61!5.43!ZNF224;;chr7:106809470..106809481,+!p2@HBP1!0.61!4.63!HBP1;;chr1:170633262..170633285,+!p3@PRRX1!0.61!3.58!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.05!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.61!3.05!RUNX1T1;;chrX:153305787..15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| |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.96!238.34!OSR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!46.61!ZBTB38;;chr6:134210243..134210257,+!p1@TCF21!1.53!32.57!TCF21;;chr18:19749541..19749557,+!p1@GATA6!1.48!89.11!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.26!GATA6;;chr1:158985493..158985535,+!p4@IFI16!1.28!27.28!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.24!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.27!30.98!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.23!16.02!SOX17;;chr12:66218598..66218645,+!p2@HMGA2!1.21!69.12!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.08!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.19!134.79!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!1.19!14.43!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.21!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.16!13.51!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!1.15!124.60!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!1.14!34.43!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.14!22.38!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!1.13!64.75!HIF1A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.31!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.05!HAND2;;chr2:208030647..208030689,-!p1@KLF7!1.11!98.91!KLF7;;chr16:67881588..67881612,-!p2@CENPT!1.11!16.29!CENPT;;chr21:36260295..36260310,-!p3@RUNX1!1.09!18.40!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!1.09!17.21!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.07!146.44!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.84!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!1.05!22.64!ARID5B;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.96!BMP2;;chr11:65686732..65686756,+!p2@DRAP1!0.99!37.60!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!14.96!CREB3L1;;chr15:67418177..67418204,+!p9@SMAD3!0.98!8.47!SMAD3;;chr19:45971246..45971265,+!p1@FOSB!0.97!160.88!FOSB;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!98.51!PLAGL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.33!ZFPM2;;chr8:25902876..25902936,-!p1@EBF2!0.96!8.21!EBF2;;chr8:72756637..72756664,-!p3@MSC!0.95!9.14!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.81!IFI16;;chr7:64467057..64467078,-!p1@ZNF117!0.93!144.72!ZNF117;;chr8:93074803..93074845,-!p1@RUNX1T1!0.93!7.41!RUNX1T1;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.59!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.08!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.28!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.31!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.27!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.54!NCOA7;;chr6:144289132..144289134,-!p3@PLAGL1!0.90!16.55!PLAGL1;;chr9:128510454..128510469,+!p3@PBX3!0.90!9.14!PBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.90!6.89!ZNF560;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.75!BNC2;;chr10:63809134..63809145,+!p6@ARID5B!0.88!15.62!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.87!29.66!ZBTB20;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.28!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.87!6.49!HOXB3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!30.19!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.86!6.22!HAND2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.22!HOXC4;;chr19:52598958..52599026,-!p1@ZNF841!0.85!61.57!ZNF841;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.82!ZBTB38;;chr7:86782094..86782108,+!p5@DMTF1!0.85!10.06!DMTF1;;chr2:66662281..66662308,+!p1@MEIS1!0.84!21.85!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.96!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.55!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.83!6.62!TFAP2A;;chr1:59249688..59249703,-!p3@JUN!0.82!36.28!JUN;;chr3:187463179..187463201,-!p2@BCL6!0.82!24.76!BCL6;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.56!TBX20;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!310.37!NFKBIZ;;chr2:28618532..28618610,+!p4@FOSL2!0.81!9.80!FOSL2;;chr21:36260343..36260402,-!p6@RUNX1!0.81!9.14!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.81!9.00!PAWR;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.21!SATB2;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.41!EBF1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.43!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.81!5.43!ZBTB47;;chrX:128657457..128657475,-!p1@SMARCA1!0.80!66.73!SMARCA1;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chrX:77041657..77041668,-!p2@ATRX!0.79!11.12!ATRX;;chr7:113726357..113726443,+!p1@FOXP2!0.79!9.40!FOXP2;;chr5:72744445..72744466,-!p2@FOXD1!0.79!8.87!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.87!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.79!5.16!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.63!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.78!12.71!NFATC4;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr4:149365827..149365870,-!p5@NR3C2!0.78!5.03!NR3C2;;chr7:4815238..4815327,+!p1@KIAA0415!0.77!117.58!AP5Z1;;chr9:16870710..16870763,-!p1@BNC2!0.77!8.87!BNC2;;chr10:63809090..63809097,+!p7@ARID5B!0.77!7.02!ARID5B;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.09!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.90!GATA4;;chr1:170632250..170632277,+!p7@PRRX1!0.77!4.90!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!233.70!STAT2;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.27!RUNX1;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.25!IFI16;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.09!FOXF1;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr16:67881647..67881663,-!p3@CENPT!0.76!4.77!CENPT;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.75!13.77!ZFP112;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.15!HOXB4;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.56!FOXD1;;chr2:66662510..66662521,+!p6@MEIS1!0.75!4.63!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.74!730.63!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.54!ARID5B;;chr1:249153268..249153298,-!p1@ZNF692!0.74!26.48!ZNF692;;chr15:67418047..67418093,+!p4@SMAD3!0.74!5.83!SMAD3;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.50!OSR1;;chr2:66662396..66662407,+!p4@MEIS1!0.74!4.50!MEIS1;;chr3:141121871..141121885,+!p13@ZBTB38!0.73!4.37!ZBTB38;;chr12:72056800..72056834,+!p1@THAP2!0.72!5.96!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.72!5.16!IFI16;;chr3:141087339..141087387,+!p2@ZBTB38!0.71!47.40!ZBTB38;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.54!CREB1;;chr2:208030488..208030551,-!p3@KLF7!0.71!16.42!KLF7;;chrX:134478706..134478736,+!p1@ZNF449!0.71!14.96!ZNF449;;chr21:36259445..36259519,-!p4@RUNX1!0.71!12.71!RUNX1;;chr19:52956798..52956843,+!p1@ZNF578!0.71!8.87!ZNF578;;chr20:25677399..25677433,-!p3@ZNF337!0.71!8.47!ZNF337;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.94!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.43!STAT1;;chr4:149363494..149363543,-!p1@NR3C2!0.71!4.10!NR3C2;;chr8:72755987..72756002,-!p7@MSC!0.71!4.10!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.70!12.58!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!7.02!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.69!PRRX1;;chr7:1577111..1577132,+!p4@MAFK!0.70!4.63!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.97!RFX8;;chr13:45150455..45150472,-!p8@TSC22D1!0.70!3.97!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.69!8.87!VDR;;chr12:66218378..66218401,+!p6@HMGA2!0.69!6.36!HMGA2;;chr17:46621101..46621143,-!p7@HOXB2!0.69!5.43!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.68!235.42!STAT1;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.95!TSC22D1;;chr8:77593474..77593612,+!p1@ZFHX4!0.68!18.27!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.35!STAT6;;chr8:72756267..72756296,-!p4@MSC!0.68!5.83!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.68!4.24!SMAD3;;chr21:36260325..36260341,-!p14@RUNX1!0.68!3.84!RUNX1;;chr8:49833948..49833973,-!p2@SNAI2!0.67!27.01!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.67!12.98!AHRR;;chr7:17338266..17338282,+!p1@AHR!0.66!45.02!AHR;;chr19:52901094..52901134,+!p1@ZNF528!0.66!27.01!ZNF528;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.84!TWIST2;;chr12:133707172..133707202,+!p2@ZNF10!0.66!9.00!ZNF10;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.66!8.08!ZNF117;;chr19:57019215..57019250,+!p1@ZNF471!0.66!5.69!ZNF471;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.50!TBX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.66!3.58!HOXC5;;chr6:126112074..126112144,+!p1@NCOA7!0.65!54.29!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.65!38.66!IFI16;;chr5:138609782..138609826,+!p5@MATR3!0.65!26.08!MATR3;;chr6:126102292..126102329,+!p3@NCOA7!0.65!12.98!NCOA7;;chr18:3451646..3451691,+!p3@TGIF1!0.65!10.46!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.30!HMGA2;;chr18:19750951..19750980,+!p10@GATA6!0.65!3.44!GATA6;;chr22:21771656..21771662,+!p1@HIC2!0.65!3.44!HIC2;;chr2:185463247..185463263,+!p1@ZNF804A!0.64!6.49!ZNF804A;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.30!NFIX;;chr6:126240463..126240489,+!p6@NCOA7!0.64!3.84!NCOA7;;chr2:231191875..231191918,+!p1@SP140L!0.63!37.47!SP140L;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.63!23.97!SNAPC4;;chr19:44952635..44952668,-!p1@ZNF229!0.63!19.07!ZNF229;;chr2:66662249..66662267,+!p2@MEIS1!0.63!14.70!MEIS1;;chr19:12721790..12721810,+!p2@ZNF791!0.63!10.33!ZNF791;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr16:67198633..67198671,+!p1@HSF4!0.63!3.31!HSF4;;chr18:19749353..19749367,+!p4@GATA6!0.63!3.31!GATA6;;chr7:1577076..1577095,+!p5@MAFK!0.63!3.31!MAFK;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.02!MLLT11;;chr8:182424..182462,+!p1@ZNF596!0.62!9.40!ZNF596;;chr5:139487608..139487663,+!p3@PURA!0.62!7.68!PURA;;chr9:4299959..4299974,-!p4@GLIS3!0.62!5.43!GLIS3;;chr7:99156011..99156036,+!p7@ZNF655!0.62!3.84!ZNF655;;chr9:14314476..14314487,-!p9@NFIB!0.62!3.18!NFIB;;chr19:22193731..22193751,-!p1@ZNF208!0.62!3.18!ZNF208;;chr21:30671690..30671762,+!p2@BACH1!0.61!12.18!BACH1;;chr19:52391147..52391218,-!p1@ZNF577!0.61!10.99!ZNF577;;chr8:72756063..72756125,-!p1@MSC!0.61!7.02!MSC;;chr19:44598560..44598576,+!p3@ZNF224!0.61!5.43!ZNF224;;chr7:106809470..106809481,+!p2@HBP1!0.61!4.63!HBP1;;chr1:170633262..170633285,+!p3@PRRX1!0.61!3.58!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.05!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.61!3.05!RUNX1T1;;chrX:153305787..15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F554;;chr4:47916613..47916640,-!p3@NFXL1!0.26!4.10!NFXL1;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.26!4.10!ZKSCAN1;;chr17:46655730..46655791,-!p1@HOXB4!0.26!3.31!HOXB4;;chr3:114819124..114819200,-!p3@ZBTB20!0.26!3.05!ZBTB20;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.26!2.78!ZKSCAN1;;chr18:56532100..56532130,+!p1@ZNF532!0.26!2.25!ZNF532;;chr19:21324863..21324874,+!p2@ZNF431!0.26!2.12!ZNF431;;chr10:97890262..97890298,+!p4@ZNF518A!0.26!2.12!ZNF518A;;chr10:43932553..43932571,+!p2@ZNF487P!0.26!1.99!ZNF487P;;chr18:3451584..3451606,+!p12@TGIF1!0.26!1.99!TGIF1;;chr19:3572908..3572917,+!p3@HMG20B!0.26!1.99!HMG20B;;chr7:148823485..148823510,+!p4@ZNF398!0.26!1.85!ZNF398;;chr2:208030299..208030332,-!p6@KLF7!0.26!1.85!KLF7;;chr6:1389789..1389821,+!p1@FOXF2!0.26!1.46!FOXF2;;chr15:96869114..96869160,+!p11@NR2F2!0.26!1.46!NR2F2;;chr15:37391588..37391604,-!p11@MEIS2!0.26!1.32!MEIS2;;chr15:77713095..77713113,+!p5@HMG20A!0.26!1.19!HMG20A;;chr2:231084820..231084836,-!p5@SP110!0.26!1.06!SP110;;chr14:61116168..61116180,-!p2@SIX1!0.26!1.06!SIX1;;chr6:43140149..43140177,+!p8@SRF!0.26!0.93!SRF;;chr8:128748470..128748487,+!p1@MYC!0.25!179.68!MYC;;chr9:33290491..33290564,+!p1@NFX1!0.25!58.52!NFX1;;chr8:128748308..128748324,+!p2@MYC!0.25!43.96!MYC;;chr19:19932513..19932569,-!p1@ZNF506!0.25!30.19!ZNF506;;chr19:9695169..9695188,-!p1@ZNF121!0.25!27.94!ZNF121;;chr16:69599861..69599885,+!p1@NFAT5!0.25!25.95!NFAT5;;chr9:129567282..129567353,+!p1@ZBTB43!0.25!20.52!ZBTB43;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.25!16.82!ZBTB41;;chr18:32820990..32821031,+!p1@ZNF397!0.25!15.49!ZNF397;;chr19:52490043..52490113,-!p1@ZNF350!0.25!12.05!ZNF350;;chr2:42795839..42795887,+!p2@MTA3!0.25!10.20!MTA3;;chr19:21688387..21688432,+!p1@ZNF429!0.25!9.14!ZNF429;;chr12:80084303..80084332,-!p1@PAWR!0.25!8.87!PAWR;;chr11:46722560..46722595,+!p1@ZNF408!0.25!7.81!ZNF408;;chr19:36545128..36545203,-!p1@THAP8!0.25!6.75!THAP8;;chr3:150126759..150126784,+!p2@TSC22D2!0.25!6.62!TSC22D2;;chr8:128750654..128750793,+!p3@MYC!0.25!5.83!MYC;;chrX:134477924..134477988,-!p1@ZNF75D!0.25!5.30!ZNF75D;;chr13:20357110..20357121,-!p2@PSPC1!0.25!3.58!PSPC1;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.25!3.05!ZKSCAN5;;chr19:52408285..52408310,-!p3@ZNF649!0.25!3.05!ZNF649;;chr1:91487516..91487528,-!p4@ZNF644!0.25!2.65!ZNF644;;chr19:36391434..36391450,-!p1@NFKBID!0.25!2.38!NFKBID;;chr18:3449527..3449582,+!p6@TGIF1!0.25!2.25!TGIF1;;chr9:14314106..14314119,-!p5@NFIB!0.25!2.12!NFIB;;chr12:498671..498693,-!p4@KDM5A!0.25!1.99!KDM5A;;chr19:12476443..12476467,-!p1@ZNF442!0.25!1.85!ZNF442;;chr19:44331461..44331482,+!p3@ZNF283!0.25!1.85!ZNF283;;chr3:150126101..150126118,+!p6@TSC22D2!0.25!1.85!TSC22D2;;chr6:144329531..144329546,-!p5@PLAGL1!0.25!1.72!PLAGL1;;chr8:145980968..145980996,-!p2@ZNF251!0.25!1.59!ZNF251;;chr1:41157671..41157695,+!p6@NFYC!0.25!1.46!NFYC;;chr14:62213827..62213853,+!p6@HIF1A!0.25!1.46!HIF1A;;chr3:183415653..183415664,+!p2@YEATS2!0.25!1.46!YEATS2;;chr19:52552009..52552023,-!p2@ZNF432!0.25!1.32!ZNF432;;chr5:88179518..88179569,-!p5@MEF2C!0.25!1.32!MEF2C;;chr11:67007611..67007622,+!p6@KDM2A!0.25!1.32!KDM2A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.25!1.32!ZCCHC6;;chrX:24167800..24167811,+!p3@ZFX!0.25!1.19!ZFX;;chr8:72756023..72756055,-!p6@MSC!0.25!1.19!MSC;;chr15:96869222..96869251,+!p18@NR2F2!0.25!1.06!NR2F2;;chr10:35416125..35416138,+!p10@CREM!0.25!1.06!CREM;;chr10:44144240..44144252,-!p4@ZNF32!0.25!1.06!ZNF32;;chr10:44144219..44144230,-!p5@ZNF32!0.25!0.93!ZNF32;;chr10:131762504..131762555,-!p1@EBF3!0.25!0.79!EBF3;;chr10:131762589..131762601,-!p3@EBF3!0.25!0.79!EBF3;;chr11:46333934..46333963,+!p5@CREB3L1!0.25!0.79!CREB3L1;;chr11:65668011..65668020,-!p3@FOSL1!0.25!0.79!FOSL1;;chr11:8040739..8040815,+!p4@TUB!0.25!0.79!TUB;;chr12:57917037..57917052,+!p9@MBD6!0.25!0.79!MBD6;;chr14:69260437..69260442,-!p10@ZFP36L1!0.25!0.79!ZFP36L1;;chr5:158527104..158527135,-!p4@EBF1!0.25!0.79!EBF1;;chr5:158527139..158527161,-!p5@EBF1!0.25!0.79!EBF1;;chr6:10415263..10415274,-!p8@TFAP2A!0.25!0.79!TFAP2A;;chr6:85473227..85473243,-!p5@TBX18!0.25!0.79!TBX18;; | ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14332-155F3 | |id=FF:14332-155F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000666 | ||
|is_obsolete= | |||
|library_id=CNhs12581 | |||
|library_id_phase_based=2:CNhs12581 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14332 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTGGCC.14332 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14332 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTGGCC.14332 | |||
|name=Fibroblast - Aortic Adventitial, donor2 (nuclear fraction) | |name=Fibroblast - Aortic Adventitial, donor2 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12581,LSID917,release012,COMPLETED | |profile_hcage=CNhs12581,LSID917,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10010,,, | |profile_srnaseq=SRhi10010,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155F3 | |rna_tube_id=155F3 | ||
|rna_weight_ug=6.85908 | |rna_weight_ug=6.85908 | ||
|rnaseq_library_id=SRhi10010.GTGGCC | |||
|sample_age=19 | |sample_age=19 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=7F3048 | |sample_cell_catalog=7F3048 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=HIF1A:2.9543902614;NKX3-1:2.32603546538;XBP1:2.25208799235;EVI1:1.93900976719;EN1,2:1.87460206771;MYBL2:1.8251971744;ELK1,4_GABP{A,B1}:1.68767250534;TEAD1:1.68000422067;FOX{I1,J2}:1.56478439124;SRF:1.55444652345;STAT1,3:1.5252050002;TLX2:1.51518385339;NFATC1..3:1.4927241066;ALX4:1.49227166965;SREBF1,2:1.3752999963;AHR_ARNT_ARNT2:1.33172120094;NFE2L1:1.31107586969;MAFB:1.2798777564;NKX3-2:1.23376627598;HOX{A5,B5}:1.20150992529;NFE2L2:1.16060791438;bHLH_family:1.06772115501;HOX{A4,D4}:1.053998555;SOX17:1.04244167385;HMX1:1.04130389154;NFE2:1.02859417225;TAL1_TCF{3,4,12}:1.01644396856;GCM1,2:0.998127346544;HMGA1,2:0.995892854765;NRF1:0.991796816867;ATF6:0.960012295207;HLF:0.957330846887;FOS_FOS{B,L1}_JUN{B,D}:0.914817339251;TP53:0.911003770268;BACH2:0.9044425527;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.88857056822;TLX1..3_NFIC{dimer}:0.866601510704;FOXN1:0.851630304567;FOSL2:0.826288165838;GTF2A1,2:0.820793672726;ZBTB16:0.792308552973;HSF1,2:0.787429595067;PAX2:0.764319493127;SP1:0.74993727812;ADNP_IRX_SIX_ZHX:0.730842074075;BPTF:0.729027289679;GZF1:0.70110645378;SOX2:0.684276377259;GLI1..3:0.673415885284;ZNF384:0.669186891186;TOPORS:0.65977892165;GATA4:0.637377256138;PAX8:0.633732035173;CREB1:0.62692717447;PRDM1:0.615580652202;CEBPA,B_DDIT3:0.610864579059;FOXP1:0.605200376354;NKX2-1,4:0.589856512398;NR3C1:0.576930623386;MZF1:0.576381215916;POU3F1..4:0.553661004151;ATF2:0.535039978247;MAZ:0.524903424594;ZNF143:0.51270038461;GFI1B:0.503950372379;STAT5{A,B}:0.502853921472;MTE{core}:0.484693937225;ZBTB6:0.459287848676;HBP1_HMGB_SSRP1_UBTF:0.426175824289;EBF1:0.422418791095;DBP:0.42147514365;ATF5_CREB3:0.408307178772;ELF1,2,4:0.406003299404;ATF4:0.404051195292;MEF2{A,B,C,D}:0.399180673386;AIRE:0.381000711507;ZFP161:0.380406033852;EP300:0.365075364657;CRX:0.353408538721;PAX4:0.337373826679;IKZF1:0.32557232856;GTF2I:0.324284091034;HIC1:0.310839321237;CDC5L:0.291351500516;MYFfamily:0.285033889539;NANOG:0.276784321973;IRF1,2:0.271244668964;ONECUT1,2:0.263705246723;PITX1..3:0.234469995496;RXR{A,B,G}:0.205245487471;POU1F1:0.203840698215;UFEwm:0.200299719324;KLF4:0.183195924524;TBX4,5:0.163002873881;MED-1{core}:0.15804349924;STAT2,4,6:0.145749362934;FOX{D1,D2}:0.143631443244;NKX2-2,8:0.140709573151;PATZ1:0.138822626029;NFIX:0.137299596823;RFX1:0.130589924024;IRF7:0.124294207696;ZNF238:0.093414413671;YY1:0.0918657062846;RXRA_VDR{dimer}:0.0884140158584;TFAP2B:0.0761746945712;NR1H4:0.0704930957467;XCPE1{core}:0.0702612071347;ZIC1..3:0.0498832878165;PRRX1,2:0.0494411906127;ALX1:0.0348257674596;RUNX1..3:0.00390854284703;FOXO1,3,4:-0.0285209418606;GATA6:-0.0343918317979;TEF:-0.0372226766733;TGIF1:-0.0598313421887;HNF1A:-0.0708418536215;FOXD3:-0.0826615726384;SPZ1:-0.0845353645716;RFX2..5_RFXANK_RFXAP:-0.0874402847657;NFKB1_REL_RELA:-0.0901408511483;PAX5:-0.115175760142;AR:-0.116521923221;JUN:-0.127987357514;TBP:-0.139673101988;FOXL1:-0.190095248781;NHLH1,2:-0.212408886712;EGR1..3:-0.214266157275;ARID5B:-0.239656254814;ETS1,2:-0.254333739208;NANOG{mouse}:-0.2575089672;LHX3,4:-0.259608532231;DMAP1_NCOR{1,2}_SMARC:-0.268032188981;ESR1:-0.28365118608;HOXA9_MEIS1:-0.292515515979;LEF1_TCF7_TCF7L1,2:-0.298040203391;PAX3,7:-0.299277700338;SMAD1..7,9:-0.303648167491;TFDP1:-0.315083675248;NFY{A,B,C}:-0.360986527117;SOX{8,9,10}:-0.378006354049;FOXP3:-0.382673226226;TFAP2{A,C}:-0.388246566039;PAX1,9:-0.396812851598;NFIL3:-0.402637484112;CDX1,2,4:-0.407885787609;VSX1,2:-0.432643245606;RREB1:-0.442601964534;ZNF148:-0.443714360789;REST:-0.460450754623;HAND1,2:-0.467261951139;HES1:-0.468043373105;SPI1:-0.477649951037;GFI1:-0.491409223683;RBPJ:-0.510754134039;TFAP4:-0.534299253562;RORA:-0.553494233934;SOX5:-0.562236255102;SPIB:-0.589073866628;HOX{A6,A7,B6,B7}:-0.602462360164;NKX6-1,2:-0.62414426556;MYB:-0.631739439188;PPARG:-0.640505659856;POU6F1:-0.645095035831;HNF4A_NR2F1,2:-0.667828189783;MTF1:-0.689613381799;POU5F1:-0.711384915106;LMO2:-0.770332206954;ZNF423:-0.796937476477;FOXM1:-0.862516222779;E2F1..5:-0.877212917704;NKX2-3_NKX2-5:-0.912253581219;IKZF2:-0.919398559512;ESRRA:-0.935235397505;BREu{core}:-0.946315788939;PBX1:-0.946681685651;PDX1:-0.957939344041;TFCP2:-0.980910990576;NR6A1:-0.993548424172;FOXA2:-1.01452532855;OCT4_SOX2{dimer}:-1.0571413229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.17059968643;POU2F1..3:-1.17336808352;PAX6:-1.20114254804;ZEB1:-1.2041565185;CUX2:-1.20985133158;SNAI1..3:-1.25950557168;FOXQ1:-1.50863890157;MYOD1:-1.69429136264;NR5A1,2:-1.94884340402;FOX{F1,F2,J1}:-2.1322060479;T:-2.13983398499 | |top_motifs=HIF1A:2.9543902614;NKX3-1:2.32603546538;XBP1:2.25208799235;EVI1:1.93900976719;EN1,2:1.87460206771;MYBL2:1.8251971744;ELK1,4_GABP{A,B1}:1.68767250534;TEAD1:1.68000422067;FOX{I1,J2}:1.56478439124;SRF:1.55444652345;STAT1,3:1.5252050002;TLX2:1.51518385339;NFATC1..3:1.4927241066;ALX4:1.49227166965;SREBF1,2:1.3752999963;AHR_ARNT_ARNT2:1.33172120094;NFE2L1:1.31107586969;MAFB:1.2798777564;NKX3-2:1.23376627598;HOX{A5,B5}:1.20150992529;NFE2L2:1.16060791438;bHLH_family:1.06772115501;HOX{A4,D4}:1.053998555;SOX17:1.04244167385;HMX1:1.04130389154;NFE2:1.02859417225;TAL1_TCF{3,4,12}:1.01644396856;GCM1,2:0.998127346544;HMGA1,2:0.995892854765;NRF1:0.991796816867;ATF6:0.960012295207;HLF:0.957330846887;FOS_FOS{B,L1}_JUN{B,D}:0.914817339251;TP53:0.911003770268;BACH2:0.9044425527;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.88857056822;TLX1..3_NFIC{dimer}:0.866601510704;FOXN1:0.851630304567;FOSL2:0.826288165838;GTF2A1,2:0.820793672726;ZBTB16:0.792308552973;HSF1,2:0.787429595067;PAX2:0.764319493127;SP1:0.74993727812;ADNP_IRX_SIX_ZHX:0.730842074075;BPTF:0.729027289679;GZF1:0.70110645378;SOX2:0.684276377259;GLI1..3:0.673415885284;ZNF384:0.669186891186;TOPORS:0.65977892165;GATA4:0.637377256138;PAX8:0.633732035173;CREB1:0.62692717447;PRDM1:0.615580652202;CEBPA,B_DDIT3:0.610864579059;FOXP1:0.605200376354;NKX2-1,4:0.589856512398;NR3C1:0.576930623386;MZF1:0.576381215916;POU3F1..4:0.553661004151;ATF2:0.535039978247;MAZ:0.524903424594;ZNF143:0.51270038461;GFI1B:0.503950372379;STAT5{A,B}:0.502853921472;MTE{core}:0.484693937225;ZBTB6:0.459287848676;HBP1_HMGB_SSRP1_UBTF:0.426175824289;EBF1:0.422418791095;DBP:0.42147514365;ATF5_CREB3:0.408307178772;ELF1,2,4:0.406003299404;ATF4:0.404051195292;MEF2{A,B,C,D}:0.399180673386;AIRE:0.381000711507;ZFP161:0.380406033852;EP300:0.365075364657;CRX:0.353408538721;PAX4:0.337373826679;IKZF1:0.32557232856;GTF2I:0.324284091034;HIC1:0.310839321237;CDC5L:0.291351500516;MYFfamily:0.285033889539;NANOG:0.276784321973;IRF1,2:0.271244668964;ONECUT1,2:0.263705246723;PITX1..3:0.234469995496;RXR{A,B,G}:0.205245487471;POU1F1:0.203840698215;UFEwm:0.200299719324;KLF4:0.183195924524;TBX4,5:0.163002873881;MED-1{core}:0.15804349924;STAT2,4,6:0.145749362934;FOX{D1,D2}:0.143631443244;NKX2-2,8:0.140709573151;PATZ1:0.138822626029;NFIX:0.137299596823;RFX1:0.130589924024;IRF7:0.124294207696;ZNF238:0.093414413671;YY1:0.0918657062846;RXRA_VDR{dimer}:0.0884140158584;TFAP2B:0.0761746945712;NR1H4:0.0704930957467;XCPE1{core}:0.0702612071347;ZIC1..3:0.0498832878165;PRRX1,2:0.0494411906127;ALX1:0.0348257674596;RUNX1..3:0.00390854284703;FOXO1,3,4:-0.0285209418606;GATA6:-0.0343918317979;TEF:-0.0372226766733;TGIF1:-0.0598313421887;HNF1A:-0.0708418536215;FOXD3:-0.0826615726384;SPZ1:-0.0845353645716;RFX2..5_RFXANK_RFXAP:-0.0874402847657;NFKB1_REL_RELA:-0.0901408511483;PAX5:-0.115175760142;AR:-0.116521923221;JUN:-0.127987357514;TBP:-0.139673101988;FOXL1:-0.190095248781;NHLH1,2:-0.212408886712;EGR1..3:-0.214266157275;ARID5B:-0.239656254814;ETS1,2:-0.254333739208;NANOG{mouse}:-0.2575089672;LHX3,4:-0.259608532231;DMAP1_NCOR{1,2}_SMARC:-0.268032188981;ESR1:-0.28365118608;HOXA9_MEIS1:-0.292515515979;LEF1_TCF7_TCF7L1,2:-0.298040203391;PAX3,7:-0.299277700338;SMAD1..7,9:-0.303648167491;TFDP1:-0.315083675248;NFY{A,B,C}:-0.360986527117;SOX{8,9,10}:-0.378006354049;FOXP3:-0.382673226226;TFAP2{A,C}:-0.388246566039;PAX1,9:-0.396812851598;NFIL3:-0.402637484112;CDX1,2,4:-0.407885787609;VSX1,2:-0.432643245606;RREB1:-0.442601964534;ZNF148:-0.443714360789;REST:-0.460450754623;HAND1,2:-0.467261951139;HES1:-0.468043373105;SPI1:-0.477649951037;GFI1:-0.491409223683;RBPJ:-0.510754134039;TFAP4:-0.534299253562;RORA:-0.553494233934;SOX5:-0.562236255102;SPIB:-0.589073866628;HOX{A6,A7,B6,B7}:-0.602462360164;NKX6-1,2:-0.62414426556;MYB:-0.631739439188;PPARG:-0.640505659856;POU6F1:-0.645095035831;HNF4A_NR2F1,2:-0.667828189783;MTF1:-0.689613381799;POU5F1:-0.711384915106;LMO2:-0.770332206954;ZNF423:-0.796937476477;FOXM1:-0.862516222779;E2F1..5:-0.877212917704;NKX2-3_NKX2-5:-0.912253581219;IKZF2:-0.919398559512;ESRRA:-0.935235397505;BREu{core}:-0.946315788939;PBX1:-0.946681685651;PDX1:-0.957939344041;TFCP2:-0.980910990576;NR6A1:-0.993548424172;FOXA2:-1.01452532855;OCT4_SOX2{dimer}:-1.0571413229;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.17059968643;POU2F1..3:-1.17336808352;PAX6:-1.20114254804;ZEB1:-1.2041565185;CUX2:-1.20985133158;SNAI1..3:-1.25950557168;FOXQ1:-1.50863890157;MYOD1:-1.69429136264;NR5A1,2:-1.94884340402;FOX{F1,F2,J1}:-2.1322060479;T:-2.13983398499 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14332-155F3;search_select_hide=table117:FF:14332-155F3 | |||
}} | }} | ||
Latest revision as of 19:07, 4 June 2020
| Name: | Fibroblast - Aortic Adventitial, donor2 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12581 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12581
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12581
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.135 |
| 10 | 10 | 0.365 |
| 100 | 100 | 0.662 |
| 101 | 101 | 0.702 |
| 102 | 102 | 0.147 |
| 103 | 103 | 0.231 |
| 104 | 104 | 0.924 |
| 105 | 105 | 0.186 |
| 106 | 106 | 0.00623 |
| 107 | 107 | 0.0498 |
| 108 | 108 | 0.453 |
| 109 | 109 | 0.296 |
| 11 | 11 | 0.178 |
| 110 | 110 | 0.674 |
| 111 | 111 | 0.101 |
| 112 | 112 | 0.286 |
| 113 | 113 | 0.438 |
| 114 | 114 | 0.392 |
| 115 | 115 | 0.0122 |
| 116 | 116 | 0.889 |
| 117 | 117 | 0.917 |
| 118 | 118 | 0.706 |
| 119 | 119 | 0.34 |
| 12 | 12 | 0.932 |
| 120 | 120 | 0.315 |
| 121 | 121 | 0.573 |
| 122 | 122 | 0.115 |
| 123 | 123 | 0.242 |
| 124 | 124 | 0.054 |
| 125 | 125 | 0.316 |
| 126 | 126 | 0.145 |
| 127 | 127 | 0.0317 |
| 128 | 128 | 0.0364 |
| 129 | 129 | 0.158 |
| 13 | 13 | 0.52 |
| 130 | 130 | 0.719 |
| 131 | 131 | 0.11 |
| 132 | 132 | 0.573 |
| 133 | 133 | 0.806 |
| 134 | 134 | 0.785 |
| 135 | 135 | 0.435 |
| 136 | 136 | 0.994 |
| 137 | 137 | 0.474 |
| 138 | 138 | 0.242 |
| 139 | 139 | 0.599 |
| 14 | 14 | 0.513 |
| 140 | 140 | 0.679 |
| 141 | 141 | 0.0355 |
| 142 | 142 | 0.237 |
| 143 | 143 | 0.12 |
| 144 | 144 | 0.707 |
| 145 | 145 | 0.492 |
| 146 | 146 | 0.393 |
| 147 | 147 | 0.322 |
| 148 | 148 | 0.243 |
| 149 | 149 | 0.43 |
| 15 | 15 | 0.0444 |
| 150 | 150 | 0.713 |
| 151 | 151 | 0.389 |
| 152 | 152 | 0.379 |
| 153 | 153 | 0.673 |
| 154 | 154 | 0.88 |
| 155 | 155 | 0.00287 |
| 156 | 156 | 0.0643 |
| 157 | 157 | 0.806 |
| 158 | 158 | 0.168 |
| 159 | 159 | 0.986 |
| 16 | 16 | 0.255 |
| 160 | 160 | 0.00991 |
| 161 | 161 | 0.231 |
| 162 | 162 | 0.284 |
| 163 | 163 | 0.179 |
| 164 | 164 | 0.349 |
| 165 | 165 | 0.636 |
| 166 | 166 | 0.49 |
| 167 | 167 | 0.558 |
| 168 | 168 | 0.191 |
| 169 | 169 | 0.0269 |
| 17 | 17 | 0.611 |
| 18 | 18 | 0.462 |
| 19 | 19 | 0.31 |
| 2 | 2 | 0.18 |
| 20 | 20 | 0.749 |
| 21 | 21 | 0.974 |
| 22 | 22 | 0.374 |
| 23 | 23 | 0.379 |
| 24 | 24 | 0.507 |
| 25 | 25 | 0.138 |
| 26 | 26 | 0.287 |
| 27 | 27 | 0.0761 |
| 28 | 28 | 0.961 |
| 29 | 29 | 0.826 |
| 3 | 3 | 0.658 |
| 30 | 30 | 0.67 |
| 31 | 31 | 0.497 |
| 32 | 32 | 0.388 |
| 33 | 33 | 0.745 |
| 34 | 34 | 0.262 |
| 35 | 35 | 0.497 |
| 36 | 36 | 0.178 |
| 37 | 37 | 0.846 |
| 38 | 38 | 0.222 |
| 39 | 39 | 0.962 |
| 4 | 4 | 0.081 |
| 40 | 40 | 0.0641 |
| 41 | 41 | 0.226 |
| 42 | 42 | 0.457 |
| 43 | 43 | 0.218 |
| 44 | 44 | 0.00749 |
| 45 | 45 | 0.372 |
| 46 | 46 | 0.136 |
| 47 | 47 | 0.246 |
| 48 | 48 | 0.368 |
| 49 | 49 | 0.0883 |
| 5 | 5 | 0.472 |
| 50 | 50 | 0.939 |
| 51 | 51 | 0.223 |
| 52 | 52 | 0.439 |
| 53 | 53 | 0.599 |
| 54 | 54 | 0.505 |
| 55 | 55 | 0.245 |
| 56 | 56 | 0.287 |
| 57 | 57 | 0.712 |
| 58 | 58 | 0.132 |
| 59 | 59 | 0.00666 |
| 6 | 6 | 0.156 |
| 60 | 60 | 0.0919 |
| 61 | 61 | 0.263 |
| 62 | 62 | 0.0278 |
| 63 | 63 | 0.332 |
| 64 | 64 | 0.0609 |
| 65 | 65 | 0.146 |
| 66 | 66 | 0.292 |
| 67 | 67 | 0.915 |
| 68 | 68 | 0.835 |
| 69 | 69 | 0.194 |
| 7 | 7 | 0.116 |
| 70 | 70 | 0.131 |
| 71 | 71 | 0.378 |
| 72 | 72 | 0.635 |
| 73 | 73 | 0.865 |
| 74 | 74 | 0.201 |
| 75 | 75 | 0.395 |
| 76 | 76 | 0.397 |
| 77 | 77 | 0.291 |
| 78 | 78 | 0.0609 |
| 79 | 79 | 0.931 |
| 8 | 8 | 0.0589 |
| 80 | 80 | 0.478 |
| 81 | 81 | 0.293 |
| 82 | 82 | 0.253 |
| 83 | 83 | 0.691 |
| 84 | 84 | 0.543 |
| 85 | 85 | 0.166 |
| 86 | 86 | 0.517 |
| 87 | 87 | 0.884 |
| 88 | 88 | 0.89 |
| 89 | 89 | 0.205 |
| 9 | 9 | 0.52 |
| 90 | 90 | 0.676 |
| 91 | 91 | 0.47 |
| 92 | 92 | 0.554 |
| 93 | 93 | 0.48 |
| 94 | 94 | 0.52 |
| 95 | 95 | 0.612 |
| 96 | 96 | 0.444 |
| 97 | 97 | 0.351 |
| 98 | 98 | 0.00263 |
| 99 | 99 | 0.913 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12581
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000666 human Fibroblast - Aortic Adventitial, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
