FF:403-26D4

Name:	heart, embryo E14
Species:	Mouse (Mus musculus)
Library ID:	CNhs10597
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information
Sample information strain C57BL/6J tissue heart dev stage 14 days embryo sex mixture age NA cell type CELL MIXTURE - tissue sample cell line NA company NA collaboration FANTOM5 OSC CORE (contact: Al Forrest) External link for information [{{{sample_info_link}}} {{{sample_info_link}}}] RNA information lot number NA catalog number NA sample type NA extraction protocol (Details) NA

CAGE Accession numbers
Method Sample accession id CAGE  SAMD00004723 Library accession numbers Library id Method Exp. accession id Run accession id CNhs10597 CAGE DRX008974 DRR009848 Accession ID Mm9 Library id BAM CTSS CNhs10597 DRZ001273 DRZ002656 Accession ID Mm10 Library id BAM CTSS CNhs10597

Download raw sequence, BAM & CTSS
Mm9 BAM CTSS [{{{mm9bam}}} download] [{{{mm9ctss}}} donwload] Mm10 BAM CTSS [{{{mm10bam}}} download] [{{{mm10ctss}}} donwload]

Relative expression to median (log10)

---

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10597

MCL coexpression id	Coexpression dpi cluster scores median value
0	0
1	0
10	0.168
100	0
1000	0.224
1001	0.229
1002	0.42
1003	0.031
1004	0
1005	--0.0389
1006	0.13
1007	0.0374
1008	0
1009	0.176
101	0.0272
1010	0
1011	0.00205
1012	0
1013	--0.206
1014	0.337
1015	0.0796
1016	0.182
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.372
1023	0
1024	0.168
1025	0.168
1026	0
1027	0
1028	0
1029	0.162
103	0.121
1030	0
1031	0.433
1032	0.0165
1033	--0.0665
1034	0
1035	0.339
1036	--0.107
1037	0
1038	0.0733
1039	0.0767
104	0
1040	0.173
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

---

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10597

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0105
MA0003.1	MA0003.1	0.766
MA0004.1	MA0004.1	0.552
MA0006.1	MA0006.1	0.779
MA0007.1	MA0007.1	0.138
MA0009.1	MA0009.1	0.862
MA0014.1	MA0014.1	0.909
MA0017.1	MA0017.1	6.43601e-5
MA0018.2	MA0018.2	0.824
MA0019.1	MA0019.1	0.869
MA0024.1	MA0024.1	9.77362e-5
MA0025.1	MA0025.1	0.628
MA0027.1	MA0027.1	0.0642
MA0028.1	MA0028.1	0.227
MA0029.1	MA0029.1	0.583
MA0030.1	MA0030.1	0.283
MA0031.1	MA0031.1	0.195
MA0035.2	MA0035.2	0.139
MA0038.1	MA0038.1	0.559
MA0039.2	MA0039.2	0.0577
MA0040.1	MA0040.1	0.112
MA0041.1	MA0041.1	0.809
MA0042.1	MA0042.1	0.659
MA0043.1	MA0043.1	0.998
MA0046.1	MA0046.1	1.65958e-17
MA0047.2	MA0047.2	0.0973
MA0048.1	MA0048.1	0.286
MA0050.1	MA0050.1	2.12038e-6
MA0051.1	MA0051.1	0.00843
MA0052.1	MA0052.1	6.37523e-32
MA0055.1	MA0055.1	0.0176
MA0057.1	MA0057.1	0.745
MA0058.1	MA0058.1	0.716
MA0059.1	MA0059.1	0.437
MA0060.1	MA0060.1	0.038
MA0061.1	MA0061.1	0.038
MA0062.2	MA0062.2	5.7074e-4
MA0065.2	MA0065.2	0.0133
MA0066.1	MA0066.1	0.321
MA0067.1	MA0067.1	0.896
MA0068.1	MA0068.1	0.214
MA0069.1	MA0069.1	0.548
MA0070.1	MA0070.1	0.784
MA0071.1	MA0071.1	0.358
MA0072.1	MA0072.1	0.0649
MA0073.1	MA0073.1	0.952
MA0074.1	MA0074.1	0.845
MA0076.1	MA0076.1	0.078
MA0077.1	MA0077.1	0.345
MA0078.1	MA0078.1	0.228
MA0079.2	MA0079.2	0.259
MA0080.2	MA0080.2	0.0259
MA0081.1	MA0081.1	0.95
MA0083.1	MA0083.1	1.59054e-17
MA0084.1	MA0084.1	0.726
MA0087.1	MA0087.1	0.574
MA0088.1	MA0088.1	0.0746
MA0090.1	MA0090.1	0.00177
MA0091.1	MA0091.1	0.439
MA0092.1	MA0092.1	0.991
MA0093.1	MA0093.1	0.631
MA0099.2	MA0099.2	6.86176e-6
MA0100.1	MA0100.1	0.924
MA0101.1	MA0101.1	0.118
MA0102.2	MA0102.2	0.00825
MA0103.1	MA0103.1	1.80007e-6
MA0104.2	MA0104.2	0.645
MA0105.1	MA0105.1	0.0758
MA0106.1	MA0106.1	0.406
MA0107.1	MA0107.1	0.187
MA0108.2	MA0108.2	0.135
MA0111.1	MA0111.1	0.293
MA0112.2	MA0112.2	0.35
MA0113.1	MA0113.1	0.964
MA0114.1	MA0114.1	2.8122e-7
MA0115.1	MA0115.1	0.37
MA0116.1	MA0116.1	0.00114
MA0117.1	MA0117.1	0.159
MA0119.1	MA0119.1	0.373
MA0122.1	MA0122.1	0.397
MA0124.1	MA0124.1	0.264
MA0125.1	MA0125.1	0.442
MA0131.1	MA0131.1	0.703
MA0135.1	MA0135.1	0.93
MA0136.1	MA0136.1	0.0192
MA0137.2	MA0137.2	0.00876
MA0138.2	MA0138.2	0.072
MA0139.1	MA0139.1	0.0477
MA0140.1	MA0140.1	0.2
MA0141.1	MA0141.1	0.161
MA0142.1	MA0142.1	0.517
MA0143.1	MA0143.1	0.778
MA0144.1	MA0144.1	0.219
MA0145.1	MA0145.1	0.237
MA0146.1	MA0146.1	0.917
MA0147.1	MA0147.1	0.414
MA0148.1	MA0148.1	0.076
MA0149.1	MA0149.1	0.0721
MA0150.1	MA0150.1	1.62098e-4
MA0152.1	MA0152.1	0.732
MA0153.1	MA0153.1	1.6555e-11
MA0154.1	MA0154.1	0.104
MA0155.1	MA0155.1	0.152
MA0156.1	MA0156.1	0.00276
MA0157.1	MA0157.1	0.268
MA0159.1	MA0159.1	0.917
MA0160.1	MA0160.1	0.42
MA0162.1	MA0162.1	0.452
MA0163.1	MA0163.1	0.354
MA0164.1	MA0164.1	0.396
MA0258.1	MA0258.1	0.143
MA0259.1	MA0259.1	0.807

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10597

Novel motif	Logo	P-value
1	1	0.3
10	10	0.153
100	100	0.601
101	101	0.959
102	102	0.552
103	103	0.025
104	104	0.796
105	105	0.726
106	106	0.411
107	107	0.965
108	108	0.774
109	109	0.388
11	11	0.0988
110	110	0.791
111	111	0.96
112	112	0.105
113	113	0.922
114	114	0.266
115	115	0.673
116	116	0.149
117	117	0.507
118	118	0.99
119	119	0.152
12	12	0.44
120	120	0.252
121	121	0.937
122	122	0.4
123	123	0.124
124	124	0.993
125	125	0.719
126	126	0.569
127	127	0.218
128	128	0.0505
129	129	0.255
13	13	0.105
130	130	0.175
131	131	0.632
132	132	0.956
133	133	0.895
134	134	0.702
135	135	0.781
136	136	0.152
137	137	0.703
138	138	0.104
139	139	0.499
14	14	0.784
140	140	0.763
141	141	0.0645
142	142	0.646
143	143	0.391
144	144	0.239
145	145	0.508
146	146	0.601
147	147	0.714
148	148	0.527
149	149	0.928
15	15	0.132
150	150	0.515
151	151	0.0713
152	152	0.804
153	153	0.133
154	154	0.737
155	155	0.104
156	156	0.219
157	157	0.712
158	158	0.639
159	159	0.189
160	160	0.399
161	161	0.707
162	162	0.925
163	163	0.748
164	164	0.278
165	165	0.928
166	166	0.506
167	167	0.387
168	168	0.968
169	169	0.222
17	17	0.0467
18	18	0.086
19	19	0.826
2	2	0.722
20	20	0.826
21	21	0.785
22	22	0.629
23	23	0.191
24	24	0.918
25	25	0.32
26	26	0.187
27	27	0.387
28	28	0.239
29	29	0.833
3	3	0.0868
30	30	0.203
31	31	0.34
32	32	0.393
33	33	0.0947
34	34	0.496
35	35	0.0447
36	36	0.076
37	37	0.523
38	38	0.395
39	39	0.488
4	4	0.56
40	40	0.00697
41	41	0.976
42	42	0.191
43	43	0.176
44	44	0.545
45	45	0.421
46	46	0.494
47	47	0.394
48	48	0.271
49	49	0.236
5	5	0.438
50	50	0.559
51	51	0.793
52	52	0.815
53	53	0.898
54	54	0.578
55	55	0.262
56	56	0.52
57	57	0.745
58	58	0.481
59	59	0.362
6	6	0.0467
60	60	0.444
61	61	0.844
62	62	0.187
63	63	0.741
64	64	0.463
65	65	0.228
66	66	0.896
67	67	0.926
68	68	0.238
69	69	0.426
7	7	0.947
70	70	0.00146
71	71	0.928
72	72	0.128
73	73	0.541
74	74	0.763
75	75	0.02
76	76	0.798
77	77	0.221
78	78	0.621
79	79	0.124
8	8	0.139
80	80	0.0495
81	81	0.418
82	82	0.187
83	83	0.563
84	84	0.442
85	85	0.483
86	86	0.636
87	87	0.00125
88	88	0.36
89	89	0.25
9	9	0.682
90	90	0.113
91	91	0.664
92	92	0.132
93	93	0.279
94	94	0.888
95	95	0.439
96	96	0.569
97	97	0.198
98	98	0.187
99	99	0.51

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10597

FANTOM5 (FF) ontology

---

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011337 mouse heart- embryo E14 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000296 (mouse embryonic day 14 sample)
0011337 (mouse heart- embryo E14 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)