FFCP PHASE1:Hg19::chr14:104029278..104029344,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3831,84334|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6387,20492|TSSclassifier=S|UniProt=Q96IL0,E7EVH7,G3V4L6|association_with_transcript=0bp_to_ENST00000247618,ENST00000409074,ENST00000440963,ENST00000458117,ENST00000472726,ENST00000554625,ENST00000556253,NM_032374,uc001ynl.3,uc010tyc.1,uc010tyd.1_5end|description=CAGE_peak_1_at_APOPT1_5end,CAGE_peak_2_at_KLC1_5end|id=chr14:104029278..104029344,+|ontology_enrichment_celltype=CL:1000449!4.37e-07!16;CL:0000066!6.84e-07!254|ontology_enrichment_celltype_v019=CL:1000449;3.60e-07;15!CL:0002681;9.58e-07;12!CL:0002584;9.58e-07;12|ontology_enrichment_celltype_v019_2=CL:1000449,3.70e-07,15;CL:0000066,7.96e-07,253;CL:0002681,9.67e-07,12;CL:0002584,9.67e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!1.06e-11!347;UBERON:0000119!1.62e-10!312;UBERON:0000483!3.49e-10!309;UBERON:0000475!4.10e-09!365;UBERON:0004111!4.97e-09!241;UBERON:0002100!1.47e-08!216;UBERON:0000025!3.06e-08!194;UBERON:0005256!3.81e-08!143;UBERON:0000477!8.88e-08!286;UBERON:0000064!2.01e-07!219;UBERON:0003104!2.44e-07!238;UBERON:0009142!2.44e-07!238;UBERON:0004211!4.37e-07!16;UBERON:0001285!4.37e-07!16;UBERON:0007684!4.37e-07!16;UBERON:0003220!4.37e-07!16;UBERON:0004208!4.37e-07!16|ontology_enrichment_uberon_v019=UBERON:0006555;3.60e-07;15!UBERON:0004819;3.60e-07;15!UBERON:0001285;3.60e-07;15!UBERON:0007684;3.60e-07;15!UBERON:0000353;5.16e-07;15!UBERON:0001225;9.58e-07;12!UBERON:0008987;9.58e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.11e-10,309;UBERON:0000483,2.40e-10,306;UBERON:0004111,7.69e-09,240;UBERON:0000025,7.24e-08,192;UBERON:0002100,1.75e-07,199;UBERON:0007503,3.58e-07,78;UBERON:0004211,3.70e-07,15;UBERON:0009773,3.70e-07,15;UBERON:0001231,3.70e-07,15;UBERON:0001285,3.70e-07,15;UBERON:0007684,3.70e-07,15;UBERON:0004208,3.70e-07,15;UBERON:0000353,5.46e-07,15;UBERON:0001225,9.67e-07,12;UBERON:0008987,9.67e-07,12|phase1_expression=19.9846217197612,28.6894702013917,15.6459388546528,38.0278533741896,38.885615215174,27.0424942471114,37.9949817252466,34.1128731650489,28.9916047301821,42.511971014761,83.0383389887189,29.7080266097034,32.4433383220998,18.4411865910469,44.0758509718128,42.3564842264618,39.7778388495825,46.0095356944045,40.0104895008216,35.5819857841917,52.2241769585288,31.3454721478088,16.8879232407323,24.9111453632649,25.485155837745,25.5984909255637,26.0258868556328,25.7384254895731,18.0947567350496,14.5855171276941,16.7201413181362,34.0185853057203,45.4820937355158,40.6729411183466,18.9794641421739,17.9133232934151,12.6248188913984,15.5118714388926,17.6479113773725,15.4077718208255,15.6740831967947,22.3486629553096,18.2878653020272,18.4655763250047,14.3592858601748,20.3770611397766,11.1565937714729,16.8578834088949,17.3435567701258,9.78154133895312,10.7587496742222,10.6417003449863,7.58440497620561,13.5551783552603,9.47985406160392,10.5415710143859,16.3743690034707,18.4273257244969,11.6311879100943,11.5534449747394,14.0654167675789,9.23583640522805,12.7656740877844,11.5080682643827,9.57690487474327,9.07816359505824,11.8336227309159,11.8086872670669,15.1230046341858,17.5922964211144,10.2917915447673,9.94349617166425,9.17740923578565,18.3792099091389,19.9848041967141,22.6431337149046,17.5232664588532,18.4717578195053,20.2514239238321,20.5209175493699,19.891667719909,18.9970719915219,29.9193615584249,18.0225741716503,17.7901850772711,16.2157484575273,26.8265311314128,18.9668305184979,17.8482115651913,20.0351288452426,14.7995371968457,9.98303221930596,9.55683070313072,13.2171328579026,8.96813700770458,15.5396610017295,13.1795545976268,14.1483874589699,14.8033079279647,20.0623794468814,16.2961133316795,17.0441210064504,13.6378709885538,13.7034861968763,11.4896303915187,16.1719743046043,15.9774279621359,21.3912503941878,14.956824969386,18.7459211248191,20.7262513339386,15.9391697154279,11.4180653634787,16.8550721696519,16.7256838087963,14.0503584944982,19.9274656672999,16.1504899376836,18.4704375174237,16.2468361305289,17.5792532541233,26.6126572445545,26.501220957688,28.4130276762809,13.742379920758,20.3628436757855,18.8859439291841,11.4915843638097,9.09296665663925,12.8893719455691,26.8187552945358,28.1694361075527,31.9656404608826,37.5896718479949,22.0588680679791,27.3759920835957,28.6302940938396,20.4386645527107,14.8419662947587,22.1729397462564,22.8370442802128,22.1354637591134,45.9012063248603,42.6402109202094,17.8501066510076,17.2388439926275,24.8631386170278,5.48528435902286,14.8718676802833,9.28643753323912,28.4230242534388,28.3877416385021,33.3254881543291,29.3960129800485,41.1109447485708,24.485505732666,24.8704010178805,17.8307563826837,25.9709371761298,23.4304428935269,47.9366887359885,25.8492515944294,35.8771224595809,32.7220141507823,34.0259618110339,19.5566404942135,31.4341121676638,30.9681571329136,39.8623257411296,20.8838445104988,40.1211819207592,5.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185,35.6268564510176,25.6800037930351,27.9572112083818,24.7898362053659,42.8023154157262,23.869946653953,13.462648774517,55.2671888247645,57.0505228200158,29.0716430874379,17.5235951735804,36.3725972093931,20.7340384778472,39.8349830293062,23.1489212081326,19.9759802110806,42.6640351034211,33.9919815451453,29.7726707033577,19.8734506126371,53.1491698980716,27.8564954656709,21.1858744997859,14.5671745016792,14.1150558637805,17.1195574413893,24.7753073244925,22.4649292363018,15.8369477836018,20.7841964458603,39.9495182187813,43.9364037473673,20.5651903268347,26.3954191058883,17.0966019621411,39.2658249819083,12.9556554731173,18.1545641397079,14.152355746978,16.1173883967381,29.2928391927676,19.9937013147966,26.4564750360983,26.1092366845426,19.1204694345224,23.5028285016791,33.1275066291614,38.6945642388949,26.8422224991347,17.3588690578281,29.7838929107265,35.6737343513968,32.4883239252327,14.9886278609042,34.352581765335,16.7027557225709,87.4028930203658,72.3772788336541,64.9496081549392,27.6855266043709,35.5587984462401,23.2772406938801,17.4812533443026,23.4927850641037,15.9413749280872,17.6626526973008,14.5087417242936,29.2869811075303,15.9907880762918,29.6629469322226,25.217390539874,33.1761309424258,28.2194080310732,24.5140321998372,34.1553500522512,13.9096198610183,13.2138670345833,14.091702985415,24.8189974661864,41.9944897341673,24.8748236736422,24.8314372003816,19.7253591863953,25.9444645504127,15.6193846571253,20.1254810965108,61.5254473379932,15.870805215462,27.5276313443396,28.1927133465165,30.2838593486652,26.6211156402017,17.0454292263365,37.3760577983739,20.3977659483963,20.3085228001826,15.5302380213888,9.52688649311025,35.767545559009,54.1287542915481,31.5084386994336,20.1694341930696,36.0365429412658,41.6612755061546,9.36539192622089,9.0008335728994,45.6376680703097,26.1589820523258,29.3069923989418,37.8827141340713,88.2961916800025,15.019507822253,15.2051075432474,29.2741113760492,31.1774518780032,16.5427386110459,25.0993966973022,36.4690320552743,30.5033225124491,24.3260473923904,37.8413445833637,33.9535954834611,16.5044510744641,30.1334382765039|short_description=p1@APOPT1,p2@KLC1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3831,84334 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6387,20492 | |||
|TSSclassifier=S | |||
|UniProt=Q96IL0,E7EVH7,G3V4L6 | |||
|association_with_transcript=0bp_to_ENST00000247618,ENST00000409074,ENST00000440963,ENST00000458117,ENST00000472726,ENST00000554625,ENST00000556253,NM_032374,uc001ynl.3,uc010tyc.1,uc010tyd.1_5end | |||
|description=CAGE_peak_1_at_APOPT1_5end,CAGE_peak_2_at_KLC1_5end | |||
|id=chr14:104029278..104029344,+ | |||
|ontology_enrichment_celltype=CL:1000449!4.37e-07!16;CL:0000066!6.84e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.60e-07;15!CL:0002681;9.58e-07;12!CL:0002584;9.58e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,3.70e-07,15;CL:0000066,7.96e-07,253;CL:0002681,9.67e-07,12;CL:0002584,9.67e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.06e-11!347;UBERON:0000119!1.62e-10!312;UBERON:0000483!3.49e-10!309;UBERON:0000475!4.10e-09!365;UBERON:0004111!4.97e-09!241;UBERON:0002100!1.47e-08!216;UBERON:0000025!3.06e-08!194;UBERON:0005256!3.81e-08!143;UBERON:0000477!8.88e-08!286;UBERON:0000064!2.01e-07!219;UBERON:0003104!2.44e-07!238;UBERON:0009142!2.44e-07!238;UBERON:0004211!4.37e-07!16;UBERON:0001285!4.37e-07!16;UBERON:0007684!4.37e-07!16;UBERON:0003220!4.37e-07!16;UBERON:0004208!4.37e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.60e-07;15!UBERON:0004819;3.60e-07;15!UBERON:0001285;3.60e-07;15!UBERON:0007684;3.60e-07;15!UBERON:0000353;5.16e-07;15!UBERON:0001225;9.58e-07;12!UBERON:0008987;9.58e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.11e-10,309;UBERON:0000483,2.40e-10,306;UBERON:0004111,7.69e-09,240;UBERON:0000025,7.24e-08,192;UBERON:0002100,1.75e-07,199;UBERON:0007503,3.58e-07,78;UBERON:0004211,3.70e-07,15;UBERON:0009773,3.70e-07,15;UBERON:0001231,3.70e-07,15;UBERON:0001285,3.70e-07,15;UBERON:0007684,3.70e-07,15;UBERON:0004208,3.70e-07,15;UBERON:0000353,5.46e-07,15;UBERON:0001225,9.67e-07,12;UBERON:0008987,9.67e-07,12 | |||
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| |||
|short_description=p1@APOPT1,p2@KLC1 | |||
}} |
Revision as of 03:25, 11 September 2013
Short description: | p1@APOPT1, p2@KLC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_APOPT1_5end, CAGE_peak_2_at_KLC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000247618, ENST00000409074, ENST00000440963, ENST00000458117, ENST00000472726, ENST00000554625, ENST00000556253, NM_032374, uc001ynl.3, uc010tyc.1, uc010tyd.1_5end |
EntrezGene: | 3831,84334 |
HGNC: | 20492&submit=Submit 6387, 20492 |
UniProt: | Q96IL0E7EVH7G3V4L6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 3.70e-07 | 15 |
epithelial cell | 7.96e-07 | 253 |
kidney cortical cell | 9.67e-07 | 12 |
renal cortical epithelial cell | 9.67e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.11e-10 | 309 |
epithelium | 2.40e-10 | 306 |
anatomical conduit | 7.69e-09 | 240 |
tube | 7.24e-08 | 192 |
trunk | 1.75e-07 | 199 |
epithelial vesicle | 3.58e-07 | 78 |
nephron epithelium | 3.70e-07 | 15 |
renal tubule | 3.70e-07 | 15 |
nephron tubule | 3.70e-07 | 15 |
nephron | 3.70e-07 | 15 |
uriniferous tubule | 3.70e-07 | 15 |
nephrogenic mesenchyme | 3.70e-07 | 15 |
parenchyma | 5.46e-07 | 15 |
cortex of kidney | 9.67e-07 | 12 |
renal parenchyma | 9.67e-07 | 12 |
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