FFCP PHASE1:Hg19::chr1:233750790..233750823,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C108|description=CAGE_peak_at_chr1:233750790..233750823,-|id=chr1:233750790..233750823,-|ontology_enrichment_celltype=CL:0000349!4.59e-09!3;CL:0002577!4.59e-09!3;CL:0000066!1.04e-07!254|ontology_enrichment_celltype_v019=CL:0002577;1.27e-33;3!CL:0001014;7.77e-14;2!CL:0001016;7.77e-14;2!CL:0002327;1.31e-07;4|ontology_enrichment_celltype_v019_2=CL:0002577,7.70e-34,3;CL:0001014,7.30e-14,2;CL:0001016,7.30e-14,2;CL:0002327,1.31e-07,4|ontology_enrichment_development_v019=UBERON:0008425;2.16e-26;1!UBERON:0007297;1.21e-13;2!UBERON:0006215;1.14e-09;3|ontology_enrichment_disease=DOID:305!6.40e-12!106;DOID:5093!2.02e-11!4;DOID:1612!2.02e-11!4;DOID:0050687!1.43e-08!143;DOID:1749!9.71e-08!14;DOID:7!8.49e-07!39|ontology_enrichment_disease_v019=DOID:3151;7.62e-26;1!DOID:3149;7.62e-26;1!DOID:3451;1.21e-13;2!DOID:4159;1.21e-13;2!DOID:0060122;1.21e-13;2!DOID:5093;1.31e-07;4!DOID:1612;1.31e-07;4|ontology_enrichment_disease_v019_2=DOID:3151,1.26e-25,1;DOID:3149,1.26e-25,1;DOID:3451,1.55e-13,2;DOID:4159,1.55e-13,2;DOID:0060122,1.55e-13,2;DOID:5093,1.31e-07,4;DOID:1612,1.31e-07,4|ontology_enrichment_uberon=UBERON:0000974!4.46e-14!10;UBERON:0003343!2.82e-10!4;UBERON:0004785!2.82e-10!4;UBERON:0000344!2.51e-09!12;UBERON:0006947!7.75e-09!3;UBERON:0004054!7.75e-09!3;UBERON:0002294!8.62e-09!7;UBERON:0001173!8.62e-09!7;UBERON:0004912!8.62e-09!7;UBERON:0004119!2.38e-08!169;UBERON:0000925!2.38e-08!169;UBERON:0006595!2.38e-08!169;UBERON:0003729!3.24e-08!5;UBERON:0000077!2.25e-07!130;UBERON:0004175!5.35e-07!25;UBERON:0001987!7.26e-07!4;UBERON:0004340!7.26e-07!4;UBERON:0001007!8.25e-07!155;UBERON:0001555!8.25e-07!155;UBERON:0007026!8.25e-07!155|ontology_enrichment_uberon_v019=UBERON:0001301;7.62e-26;1!UBERON:0001987;1.62e-25;4!UBERON:0006947;1.53e-09;3!UBERON:0004054;1.53e-09;3!UBERON:0001911;1.31e-07;4!UBERON:0000014;1.80e-07;4!UBERON:0003343;1.80e-07;4!UBERON:0005904;1.80e-07;4!UBERON:0004785;1.80e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001301,9.79e-26,1;UBERON:0001987,1.11e-25,4;UBERON:0004340,1.11e-25,4;UBERON:0003124,3.79e-15,7;UBERON:0004175,1.39e-09,25;UBERON:0006947,1.67e-09,3;UBERON:0004054,1.67e-09,3;UBERON:0005631,4.66e-08,14;UBERON:0000158,4.66e-08,14;UBERON:0001911,1.31e-07,4;UBERON:0005333,1.31e-07,4;UBERON:0008425,1.31e-07,4;UBERON:0005311,1.31e-07,4;UBERON:0003343,1.80e-07,4;UBERON:0004785,1.80e-07,4;UBERON:0005904,1.92e-07,4;UBERON:0000014,2.04e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.95497793895076,0,0.307160702099232,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0.269605053441981,0.716084698702437,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,9.70805999957772,0,0,0,0.472775363535873,0,0,0,0,0,0,0.663475559587348,2.06883333267483,0.219385397153973,0,0.697118721393016,0.0769502585037971,0,0,0.807818799687949,0.54323685961004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.586993856796269,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.979923974143776,0,1.04836000945218,0,0,0.0730893170861856,0.164230914106418,0.193978032976839,0,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,2.32140586367385,0,1.0063040627978,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.41563668017288,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0.111231401892069,0,0.157115589916002,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0.098150233615243,0.243835849964539,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0.231522474323834,0,0.470317296361523,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0,0,0.435433495793923,0,0.202056159043763,0,0.332660356546013,0.732629417498771,0,0,0,0,0,0,0,0,0|short_description=p@chr1:233750790..233750823,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_at_chr1:233750790..233750823,- | |||
|id=chr1:233750790..233750823,- | |||
|ontology_enrichment_celltype=CL:0000349!4.59e-09!3;CL:0002577!4.59e-09!3;CL:0000066!1.04e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002577;1.27e-33;3!CL:0001014;7.77e-14;2!CL:0001016;7.77e-14;2!CL:0002327;1.31e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.70e-34,3;CL:0001014,7.30e-14,2;CL:0001016,7.30e-14,2;CL:0002327,1.31e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.16e-26;1!UBERON:0007297;1.21e-13;2!UBERON:0006215;1.14e-09;3 | |||
|ontology_enrichment_disease=DOID:305!6.40e-12!106;DOID:5093!2.02e-11!4;DOID:1612!2.02e-11!4;DOID:0050687!1.43e-08!143;DOID:1749!9.71e-08!14;DOID:7!8.49e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:3151;7.62e-26;1!DOID:3149;7.62e-26;1!DOID:3451;1.21e-13;2!DOID:4159;1.21e-13;2!DOID:0060122;1.21e-13;2!DOID:5093;1.31e-07;4!DOID:1612;1.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.26e-25,1;DOID:3149,1.26e-25,1;DOID:3451,1.55e-13,2;DOID:4159,1.55e-13,2;DOID:0060122,1.55e-13,2;DOID:5093,1.31e-07,4;DOID:1612,1.31e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000974!4.46e-14!10;UBERON:0003343!2.82e-10!4;UBERON:0004785!2.82e-10!4;UBERON:0000344!2.51e-09!12;UBERON:0006947!7.75e-09!3;UBERON:0004054!7.75e-09!3;UBERON:0002294!8.62e-09!7;UBERON:0001173!8.62e-09!7;UBERON:0004912!8.62e-09!7;UBERON:0004119!2.38e-08!169;UBERON:0000925!2.38e-08!169;UBERON:0006595!2.38e-08!169;UBERON:0003729!3.24e-08!5;UBERON:0000077!2.25e-07!130;UBERON:0004175!5.35e-07!25;UBERON:0001987!7.26e-07!4;UBERON:0004340!7.26e-07!4;UBERON:0001007!8.25e-07!155;UBERON:0001555!8.25e-07!155;UBERON:0007026!8.25e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;7.62e-26;1!UBERON:0001987;1.62e-25;4!UBERON:0006947;1.53e-09;3!UBERON:0004054;1.53e-09;3!UBERON:0001911;1.31e-07;4!UBERON:0000014;1.80e-07;4!UBERON:0003343;1.80e-07;4!UBERON:0005904;1.80e-07;4!UBERON:0004785;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,9.79e-26,1;UBERON:0001987,1.11e-25,4;UBERON:0004340,1.11e-25,4;UBERON:0003124,3.79e-15,7;UBERON:0004175,1.39e-09,25;UBERON:0006947,1.67e-09,3;UBERON:0004054,1.67e-09,3;UBERON:0005631,4.66e-08,14;UBERON:0000158,4.66e-08,14;UBERON:0001911,1.31e-07,4;UBERON:0005333,1.31e-07,4;UBERON:0008425,1.31e-07,4;UBERON:0005311,1.31e-07,4;UBERON:0003343,1.80e-07,4;UBERON:0004785,1.80e-07,4;UBERON:0005904,1.92e-07,4;UBERON:0000014,2.04e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5156378572313,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0.95497793895076,0,0.307160702099232,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0.269605053441981,0.716084698702437,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,9.70805999957772,0,0,0,0.472775363535873,0,0,0,0,0,0,0.663475559587348,2.06883333267483,0.219385397153973,0,0.697118721393016,0.0769502585037971,0,0,0.807818799687949,0.54323685961004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0.586993856796269,0,0.394584402849391,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.979923974143776,0,1.04836000945218,0,0,0.0730893170861856,0.164230914106418,0.193978032976839,0,0,0,0,0,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,2.32140586367385,0,1.0063040627978,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,1.41563668017288,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0.443568258651136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0.111231401892069,0,0.157115589916002,0.840816489941367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0.9164274741762,0,0,0,0.098150233615243,0.243835849964539,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0,0,0.231522474323834,0,0.470317296361523,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0,0,0.435433495793923,0,0.202056159043763,0,0.332660356546013,0.732629417498771,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:233750790..233750823,- | |||
}} |
Revision as of 04:15, 12 September 2013
Short description: | p@chr1:233750790..233750823, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:233750790..233750823, - |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.70e-34 | 3 |
CD1a-positive Langerhans cell | 7.30e-14 | 2 |
immature CD1a-positive Langerhans cell | 7.30e-14 | 2 |
mammary gland epithelial cell | 1.31e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
epididymis | 9.79e-26 | 1 |
placenta | 1.11e-25 | 4 |
allantois | 1.11e-25 | 4 |
chorion | 3.79e-15 | 7 |
internal genitalia | 1.39e-09 | 25 |
male genital duct | 1.67e-09 | 3 |
internal male genitalia | 1.67e-09 | 3 |
extraembryonic membrane | 4.66e-08 | 14 |
membranous layer | 4.66e-08 | 14 |
mammary gland | 1.31e-07 | 4 |
mammary bud | 1.31e-07 | 4 |
mammary ridge | 1.31e-07 | 4 |
mammary placode | 1.31e-07 | 4 |
mucosa of oral region | 1.80e-07 | 4 |
respiratory system mucosa | 1.80e-07 | 4 |
duct of male reproductive system | 1.92e-07 | 4 |
zone of skin | 2.04e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.26e-25 | 1 |
keratoacanthoma | 1.26e-25 | 1 |
skin carcinoma | 1.55e-13 | 2 |
skin cancer | 1.55e-13 | 2 |
integumentary system cancer | 1.55e-13 | 2 |
thoracic cancer | 1.31e-07 | 4 |
breast cancer | 1.31e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.