FFCP PHASE1:Hg19::chr20:58508681..58508698,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10388 | |EntrezGene=10388 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11490 | |HGNC=11490 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BX26,A2A2M9 | |UniProt=Q9BX26,A2A2M9 | ||
|association_with_transcript=11bp_to_ENST00000357552,ENST00000425931_5end | |association_with_transcript=11bp_to_ENST00000357552,ENST00000425931_5end | ||
|cluster_id=chr20:58508681..58508698,- | |||
|coexpression_cluster_id=C2624 | |||
|description=CAGE_peak_1_at_SYCP2_5end | |description=CAGE_peak_1_at_SYCP2_5end | ||
|id=chr20:58508681..58508698,- | |id=chr20:58508681..58508698,- | ||
|ontology_enrichment_celltype=CL:0000791!1.18e-08!18;CL:0000789!1.18e-08!18;CL:0002420!1.18e-08!18;CL:0002419!1.18e-08!18;CL:0000790!1.18e-08!18 | |ontology_enrichment_celltype=CL:0000791!1.18e-08!18;CL:0000789!1.18e-08!18;CL:0002420!1.18e-08!18;CL:0002419!1.18e-08!18;CL:0000790!1.18e-08!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.59e-09;18!CL:0000789;3.59e-09;18!CL:0002419;3.59e-09;18!CL:0000084;1.76e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.79e-09,18;CL:0000789,2.79e-09,18;CL:0002420,2.79e-09,18;CL:0002419,2.79e-09,18;CL:0000790,2.79e-09,18;CL:0000084,1.42e-07,25;CL:0000827,1.42e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;3.59e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1325;1.28e-08;7!DOID:3904;1.28e-08;7!DOID:299;1.97e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.81e-11,106;DOID:0050687,1.68e-09,143;DOID:1325,1.23e-08,7;DOID:3904,1.23e-08,7;DOID:299,1.64e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.00e-16!115;UBERON:0001049!1.05e-12!57;UBERON:0005068!1.05e-12!57;UBERON:0006241!1.05e-12!57;UBERON:0007135!1.05e-12!57;UBERON:0003080!9.65e-11!42;UBERON:0002020!2.30e-10!34;UBERON:0003528!2.30e-10!34;UBERON:0002616!2.39e-10!59;UBERON:0001893!2.42e-10!34;UBERON:0002780!2.77e-10!41;UBERON:0001890!2.77e-10!41;UBERON:0006240!2.77e-10!41;UBERON:0001950!6.94e-10!20;UBERON:0001869!8.05e-10!32;UBERON:0002791!8.07e-10!33;UBERON:0000956!2.15e-09!25;UBERON:0000203!2.15e-09!25;UBERON:0003075!5.67e-09!86;UBERON:0007284!5.67e-09!86;UBERON:0002619!1.67e-08!22;UBERON:0000955!2.59e-08!69;UBERON:0006238!2.59e-08!69;UBERON:0002346!5.42e-08!90;UBERON:0001017!9.53e-08!82;UBERON:0005743!1.06e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;5.04e-08;7!UBERON:0001173;5.04e-08;7 | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0.383829398097213,0.464448369948228,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0.954053754535364,0,0,0,0,0.560508562981536,0,1.57367816091066,1.17903228824749,1.43921049299656,0.668745981562712,0.977766799900771,0.473447805734733,0,2.1167986808183,2.06224135232386,1.32920336750173,1.35401931882508,0.512365278902701,0.520237390239513,1.15106533222573,0.276350017785848,2.31842468588042,0.593146252648242,0,0,1.92625882585863,0.383220493601921,1.03088233644789,1.77113784413652,1.27426165729639,1.30216690771284,1.90090408889675,0.752875595388864,0.76791966692651,0,1.4206635122641,0,1.81446068902259,0.802320587350522,1.44824403882799,0,0,0.12786256184353,0.361439152384566,0,0.144846518960824,0,0,0,0.221729397462564,0,4.38779902917337,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,1.18800285728205,0,0,0,0,0.250237039743928,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04252598026766,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0.16798212819886,0,0.626909658919938,0.290633938513962,0,1.47798971368783,0.792435906119034,0.207328115540772,0.864719720501769,0.37872730027914,0.952468414382536,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0.985153801009636,1.2937654491571,1.15508732651774,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.16383192917273,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0.657779629937804,0,0,0.328014645699706,0,0.412164046590889,5.12789002982723,5.61064599459998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0,0,1.52234282769651,0,0,0.238231775457789,0.822724546172388,0,0.540031437238115,0,2.56377770705936,0,0,0,0,0,2.71024663638998,0,0,0,5.51857298466744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81974010175699,0,0.73254089635947,9.10203913121351,0,0,0,1.18785872333055,0.307160702099232,0.994147647766298,0,0,0,0.844501632511974,0.19924798825107,0,26.2010057768447,0,0,0,0,1.07412704805365,0,0,0,0,0.969332746095218,0.834912883456661,0,6.51069402713083,10.1453599995587,0.724999575434793,7.51036758684298,3.81380475439149,7.09163045303809,0,0,0,0,0.120596438625408,3.05163472634166,0.663475559587348,0.886642856860642,0.438770794307945,0,0.557694977114413,0.0769502585037971,1.13942055847001,0,0,6.30154757147647,0.31900115973192,0,0,0,0,0,0,0,0,0.37950746544837,0.476809736941136,3.37596903244843,16.4865136240739,10.4601272861116,0,0,0.442287822516696,0.611030144933625,0,0,0,0.202203398942031,0.802577647298789,0.468528891450678,0,1.17398771359254,0,0.394584402849391,1.20990716048664,0,0,0.300646838828985,0,5.31723098165748,1.65495977937749,2.19753042885058,3.58417289318877,2.27687636823834,0,0,0,8.88003907120106,0.17472666824203,9.63121781841053,0,0,0,0,0.0882561266915003,0,0,0,0.949661939338181,22.0973062490327,3.68730573157055,0.426905989478705,5.59466906829965,0,3.09248809647972,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,0,1.99679000498991,0,0.223171457441873,0.470284307407084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.91124334987037,0,0.472834243795189,0.209818352539992,1.5840050477911,0,0.959575986597226,0,0.662091970365432,0.25426853765475,0,0,0,0,1.06720276974141,0,6.11885294208679,0,0,0.646414781807753,0.39669780522807,0,0,0.213574825135389,0.471612915298998,0.828478110694391,0.496166021811951,0,0,0,0,0,0,0,11.9361113150178,1.77213635993397,0.976210119215705,0.3755727921195,0,0.221858103073705,0.434674820589684,0,0,3.1846314683746,0.856396000634902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,7.12693372507022,0,0,0.680117776536817,0.926089897295336,4.40526068111642,0,0,2.19284049578707,0,0,0,0,0,0,1.38258436151731,0.194860308839388,0,1.4720885483026,0,0,0,0,0.960225567247268,0,0,0.552317850755522,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0.642292250964595,5.6678630530234,1.75597244962866,0.615349092722265,0.504143392443436,1.10651603942749,0.807378228159255,1.42769420259154,0,0.11796972334774,0,0,0,0,0,0,0.60511520611056,0,0,0,12.7156234146659,0.87798860003913,3.90539049306924,1.03343398250592,0.760989722326882,0,0,0,0,0,0.535701835878287,0,0,0.682986574053893,0.532214220975833,0,0,1.22345519358297,0.657727735628491,0.118193840883968,0.556157009460346,0.54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| ||
|short_description=p1@SYCP2 | |short_description=p1@SYCP2 | ||
}} | }} |
Latest revision as of 08:12, 17 September 2015
Short description: | p1@SYCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SYCP2_5end |
Coexpression cluster: | C2624_argyrophil_breast_bronchogenic_small_transitionalcell_epidermoid_gall |
Association with transcript: | 11bp_to_ENST00000357552, ENST00000425931_5end |
EntrezGene: | SYCP2 |
HGNC: | 11490 |
UniProt: | Q9BX26A2A2M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.79e-09 | 18 |
alpha-beta T cell | 2.79e-09 | 18 |
immature T cell | 2.79e-09 | 18 |
mature T cell | 2.79e-09 | 18 |
immature alpha-beta T cell | 2.79e-09 | 18 |
T cell | 1.42e-07 | 25 |
pro-T cell | 1.42e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.81e-11 | 106 |
cell type cancer | 1.68e-09 | 143 |
bronchus cancer | 1.23e-08 | 7 |
bronchogenic carcinoma | 1.23e-08 | 7 |
adenocarcinoma | 1.64e-07 | 25 |