FFCP PHASE1:Hg19::chr3:28617116..28617136,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:28617116..28617136,+ | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_at_chr3:28617116..28617136,+ | |description=CAGE_peak_at_chr3:28617116..28617136,+ | ||
|id=chr3:28617116..28617136,+ | |id=chr3:28617116..28617136,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.26e-12!5;CL:0000540!1.27e-07!6;CL:0000031!1.27e-07!6;CL:0000404!1.27e-07!6 | |ontology_enrichment_celltype=CL:0002322!1.26e-12!5;CL:0000540!1.27e-07!6;CL:0000031!1.27e-07!6;CL:0000404!1.27e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.40e-27;6!CL:0000404;1.40e-27;6!CL:0000333;1.45e-15;5!CL:0002321;1.52e-11;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.47e-27,6;CL:0000031,1.47e-27,6;CL:0000404,1.47e-27,6;CL:0000047,7.25e-21,8;CL:0000133,1.53e-10,59;CL:0000221,1.17e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.40e-27;6!CL:0000133;4.69e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.55e-17;10!DOID:169;3.88e-13;6!DOID:3095;4.66e-08;22!DOID:2994;4.66e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.59e-17,10;DOID:169,2.95e-13,6;DOID:3095,3.84e-08,22;DOID:2994,3.84e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.29e-30!94;UBERON:0001016!7.29e-30!94;UBERON:0002780!2.17e-29!41;UBERON:0001890!2.17e-29!41;UBERON:0006240!2.17e-29!41;UBERON:0003080!1.54e-28!42;UBERON:0001017!5.82e-28!82;UBERON:0005743!7.50e-28!86;UBERON:0001049!3.81e-27!57;UBERON:0005068!3.81e-27!57;UBERON:0006241!3.81e-27!57;UBERON:0007135!3.81e-27!57;UBERON:0002616!5.78e-26!59;UBERON:0000955!5.51e-24!69;UBERON:0006238!5.51e-24!69;UBERON:0002020!2.14e-22!34;UBERON:0003528!2.14e-22!34;UBERON:0001893!2.34e-22!34;UBERON:0001869!1.61e-21!32;UBERON:0002791!8.78e-21!33;UBERON:0003056!3.44e-19!61;UBERON:0002346!1.53e-18!90;UBERON:0007023!2.83e-18!115;UBERON:0003075!3.52e-18!86;UBERON:0007284!3.52e-18!86;UBERON:0002619!2.42e-17!22;UBERON:0001950!1.85e-16!20;UBERON:0000956!6.20e-15!25;UBERON:0000203!6.20e-15!25;UBERON:0000924!1.57e-13!173;UBERON:0006601!1.57e-13!173;UBERON:0004121!4.40e-13!169;UBERON:0000153!7.19e-12!129;UBERON:0007811!7.19e-12!129;UBERON:0000033!7.76e-12!123;UBERON:0002308!3.47e-09!9;UBERON:0000125!3.47e-09!9;UBERON:0001894!9.19e-09!7;UBERON:0006222!9.19e-09!7;UBERON:0000988!9.37e-08!3;UBERON:0001871!4.26e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.45e-15;5!UBERON:0002410;1.45e-15;5!UBERON:0002360;2.37e-10;2!UBERON:0000094;2.37e-10;2!UBERON:0010743;2.37e-10;2!UBERON:0000010;4.52e-09;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,1.05e-15,5;UBERON:0002410,1.05e-15,5;UBERON:0002360,2.99e-10,2;UBERON:0000094,2.99e-10,2;UBERON:0010743,2.99e-10,2;UBERON:0001016,2.60e-09,89;UBERON:0000010,3.77e-09,8 | |||
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| ||
|short_description=p@chr3:28617116..28617136,+ | |short_description=p@chr3:28617116..28617136,+ | ||
}} | }} |
Latest revision as of 20:19, 29 July 2015
Short description: | p@chr3:28617116..28617136, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:28617116..28617136, + |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.47e-27 | 6 |
neuroblast | 1.47e-27 | 6 |
electrically signaling cell | 1.47e-27 | 6 |
neuronal stem cell | 7.25e-21 | 8 |
neurectodermal cell | 1.53e-10 | 59 |
ectodermal cell | 1.17e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 1.05e-15 | 5 |
autonomic nervous system | 1.05e-15 | 5 |
meninx | 2.99e-10 | 2 |
membrane organ | 2.99e-10 | 2 |
meningeal cluster | 2.99e-10 | 2 |
nervous system | 2.60e-09 | 89 |
peripheral nervous system | 3.77e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.59e-17 | 10 |
neuroendocrine tumor | 2.95e-13 | 6 |
germ cell and embryonal cancer | 3.84e-08 | 22 |
germ cell cancer | 3.84e-08 | 22 |