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MCL coexpression mm9:111

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:127706229..127706250,+p@chr10:127706229..127706250
+
Mm9::chr10:127706257..127706269,+p@chr10:127706257..127706269
+
Mm9::chr10:24635897..24635907,-p@chr10:24635897..24635907
-
Mm9::chr10:74892792..74892802,+p@chr10:74892792..74892802
+
Mm9::chr10:75398971..75399004,+p@chr10:75398971..75399004
+
Mm9::chr10:76548087..76548106,-p@chr10:76548087..76548106
-
Mm9::chr10:89109768..89109780,-p@chr10:89109768..89109780
-
Mm9::chr11:101229023..101229038,+p1@G6pc
Mm9::chr11:108268594..108268621,+p@chr11:108268594..108268621
+
Mm9::chr11:116035738..116035759,-p@chr11:116035738..116035759
-
Mm9::chr11:116039483..116039495,-p@chr11:116039483..116039495
-
Mm9::chr11:116059987..116059991,-p4@Acox1
Mm9::chr11:59797001..59797024,-p4@Pemt
Mm9::chr11:7097653..7097659,+p6@Igfbp1
Mm9::chr11:75228562..75228579,-p5@Serpinf1
Mm9::chr11:75229127..75229150,-p4@Serpinf1
Mm9::chr11:78313973..78313987,+p4@Vtn
Mm9::chr11:78315675..78315696,+p@chr11:78315675..78315696
+
Mm9::chr12:105006238..105006257,-p@chr12:105006238..105006257
-
Mm9::chr12:105652082..105652089,+p@chr12:105652082..105652089
+
Mm9::chr12:110089332..110089339,+p1@Slc25a47
Mm9::chr12:71328417..71328441,-p3@Pygl
Mm9::chr12:82057018..82057044,-p@chr12:82057018..82057044
-
Mm9::chr12:82059070..82059089,-p@chr12:82059070..82059089
-
Mm9::chr12:85777422..85777462,-p@chr12:85777422..85777462
-
Mm9::chr13:36818465..36818489,-p@chr13:36818465..36818489
-
Mm9::chr13:41280158..41280170,-p@chr13:41280158..41280170
-
Mm9::chr13:41290161..41290172,-p@chr13:41290161..41290172
-
Mm9::chr14:32432220..32432229,-p@chr14:32432220..32432229
-
Mm9::chr14:41920137..41920147,+p@chr14:41920137..41920147
+
Mm9::chr14:41922807..41922810,+p@chr14:41922807..41922810
+
Mm9::chr14:41928042..41928064,+p@chr14:41928042..41928064
+
Mm9::chr14:41928151..41928172,+p@chr14:41928151..41928172
+
Mm9::chr14:41935818..41935845,-p@chr14:41935818..41935845
-
Mm9::chr14:41936105..41936117,+p@chr14:41936105..41936117
+
Mm9::chr14:70608100..70608121,-p@chr14:70608100..70608121
-
Mm9::chr14:75660501..75660542,+p@chr14:75660501..75660542
+
Mm9::chr15:101934792..101934804,+p11@Tenc1
Mm9::chr15:3201263..3201268,+p@chr15:3201263..3201268
+
Mm9::chr15:82623044..82623052,-p@chr15:82623044..82623052
-
Mm9::chr15:82623596..82623625,-p@chr15:82623596..82623625
-
Mm9::chr15:96849901..96849913,-p@chr15:96849901..96849913
-
Mm9::chr15:96849958..96849969,-p@chr15:96849958..96849969
-
Mm9::chr16:22929198..22929243,+p@chr16:22929198..22929243
+
Mm9::chr16:22939419..22939434,+p@chr16:22939419..22939434
+
Mm9::chr16:22961014..22961028,+p@chr16:22961014..22961028
+
Mm9::chr16:22961117..22961145,+p@chr16:22961117..22961145
+
Mm9::chr16:22961202..22961217,+p@chr16:22961202..22961217
+
Mm9::chr16:23079800..23079804,+p@chr16:23079800..23079804
+
Mm9::chr16:26359195..26359226,-p@chr16:26359195..26359226
-
Mm9::chr16:30260181..30260197,-p@chr16:30260181..30260197
-
Mm9::chr16:35923854..35923859,+p@chr16:35923854..35923859
+
Mm9::chr16:4829283..4829319,-p@chr16:4829283..4829319
-
Mm9::chr16:8619690..8619716,+p@chr16:8619690..8619716
+
Mm9::chr17:12588483..12588503,+p@chr17:12588483..12588503
+
Mm9::chr17:26224337..26224366,-p@chr17:26224337..26224366
-
Mm9::chr17:41074062..41074072,+p@chr17:41074062..41074072
+
Mm9::chr17:57354263..57354273,-p@chr17:57354263..57354273
-
Mm9::chr19:44086917..44086932,-p@chr19:44086917..44086932
-
Mm9::chr1:162919625..162919643,+p@chr1:162919625..162919643
+
Mm9::chr1:162927765..162927780,+p@chr1:162927765..162927780
+
Mm9::chr1:166193610..166193653,+p@chr1:166193610..166193653
+
Mm9::chr1:67219400..67219410,+p@chr1:67219400..67219410
+
Mm9::chr1:67233471..67233474,+p@chr1:67233471..67233474
+
Mm9::chr1:90109123..90109144,+p@chr1:90109123..90109144
+
Mm9::chr1:90109257..90109275,+p@chr1:90109257..90109275
+
Mm9::chr2:172980232..172980249,+p@chr2:172980232..172980249
+
Mm9::chr2:172980262..172980288,+p@chr2:172980262..172980288
+
Mm9::chr2:172982582..172982596,+p@chr2:172982582..172982596
+
Mm9::chr2:172983490..172983506,+p@chr2:172983490..172983506
+
Mm9::chr2:27532912..27532923,+p9@Rxra
Mm9::chr2:44776173..44776198,-p@chr2:44776173..44776198
-
Mm9::chr2:4849704..4849713,+p@chr2:4849704..4849713
+
Mm9::chr2:4857036..4857072,+p@chr2:4857036..4857072
+
Mm9::chr2:5846314..5846318,-p2@Dhtkd1
Mm9::chr2:91470837..91470851,-p@chr2:91470837..91470851
-
Mm9::chr3:82835919..82835954,+p@chr3:82835919..82835954
+
Mm9::chr3:95124914..95124936,+p8@Lass2
Mm9::chr4:115159849..115159881,-p@chr4:115159849..115159881
-
Mm9::chr4:49555698..49555730,-p@chr4:49555698..49555730
-
Mm9::chr4:58891953..58891965,-p@chr4:58891953..58891965
-
Mm9::chr5:128180989..128181000,+p@chr5:128180989..128181000
+
Mm9::chr5:136209372..136209413,+p5@Por
Mm9::chr5:136209418..136209433,+p7@Por
Mm9::chr5:35384936..35384983,+p@chr5:35384936..35384983
+
Mm9::chr5:90890734..90890776,+p@chr5:90890734..90890776
+
Mm9::chr5:90898608..90898643,+p@chr5:90898608..90898643
+
Mm9::chr5:90953839..90953865,+p@chr5:90953839..90953865
+
Mm9::chr6:90509350..90509357,+p@chr6:90509350..90509357
+
Mm9::chr7:108494482..108494491,+p@chr7:108494482..108494491
+
Mm9::chr7:147956040..147956100,+p@chr7:147956040..147956100
+
Mm9::chr8:108463802..108463813,-p@chr8:108463802..108463813
-
Mm9::chr8:108463960..108463997,-p@chr8:108463960..108463997
-
Mm9::chr8:108466262..108466303,-p@chr8:108466262..108466303
-
Mm9::chr8:108467177..108467188,-p@chr8:108467177..108467188
-
Mm9::chr8:10892047..10892071,-p@chr8:10892047..10892071
-
Mm9::chr8:112522789..112522794,+p@chr8:112522789..112522794
+
Mm9::chr8:127083208..127083217,-p@chr8:127083208..127083217
-
Mm9::chr8:127083219..127083229,-p@chr8:127083219..127083229
-
Mm9::chr8:127088246..127088261,-p@chr8:127088246..127088261
-
Mm9::chr9:107554554..107554565,-p@chr9:107554554..107554565
-
Mm9::chr9:110264937..110264974,+p@chr9:110264937..110264974
+
Mm9::chr9:121823798..121823819,-p@chr9:121823798..121823819
-
Mm9::chr9:46078347..46078361,+p@chr9:46078347..46078361
+
Mm9::chr9:83934922..83934926,+p@chr9:83934922..83934926
+
Mm9::chr9:83946779..83946780,+p@chr9:83946779..83946780
+
Mm9::chr9:95460455..95460464,+p@chr9:95460455..95460464
+
Mm9::chrX:98579969..98579982,+p@chrX:98579969..98579982
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0044255cellular lipid metabolic process0.00776432066695159
GO:0006629lipid metabolic process0.00854523667889149
GO:0019842vitamin binding0.0242127072511119
GO:0005739mitochondrion0.0242127072511119
GO:0016866intramolecular transferase activity0.0242127072511119
GO:0006073glucan metabolic process0.0242127072511119
GO:0005977glycogen metabolic process0.0242127072511119
GO:0006112energy reserve metabolic process0.0242127072511119
GO:0016903oxidoreductase activity, acting on the aldehyde or oxo group of donors0.0242127072511119
GO:0048037cofactor binding0.0242127072511119
GO:0006091generation of precursor metabolites and energy0.0242127072511119
GO:0004608phosphatidylethanolamine N-methyltransferase activity0.0242127072511119
GO:0051156glucose 6-phosphate metabolic process0.0242127072511119
GO:0004491methylmalonate-semialdehyde dehydrogenase (acylating) activity0.0242127072511119
GO:0046415urate metabolic process0.0242127072511119
GO:0001977renal regulation of blood volume0.0242127072511119
GO:0002017aldosterone mediated regulation of blood volume0.0242127072511119
GO:0004494methylmalonyl-CoA mutase activity0.0242127072511119
GO:0004507steroid 11-beta-monooxygenase activity0.0242127072511119
GO:0006307DNA dealkylation0.0242127072511119
GO:0006705mineralocorticoid biosynthetic process0.0242127072511119
GO:0032342aldosterone biosynthetic process0.0242127072511119
GO:0044264cellular polysaccharide metabolic process0.0254827065698553
GO:0005976polysaccharide metabolic process0.0254827065698553
GO:0032341aldosterone metabolic process0.0332742320185638
GO:0003908methylated-DNA-[protein]-cysteine S-methyltransferase activity0.0332742320185638
GO:0004607phosphatidylcholine-sterol O-acyltransferase activity0.0332742320185638
GO:0008184glycogen phosphorylase activity0.0332742320185638
GO:0008212mineralocorticoid metabolic process0.0332742320185638
GO:0004346glucose-6-phosphatase activity0.0332742320185638
GO:0004591oxoglutarate dehydrogenase (succinyl-transferring) activity0.0332742320185638
GO:0047783corticosterone 18-monooxygenase activity0.0332742320185638
GO:0008610lipid biosynthetic process0.0335243363309589
GO:0015980energy derivation by oxidation of organic compounds0.0342196772509301
GO:0044275cellular carbohydrate catabolic process0.0342196772509301
GO:0044262cellular carbohydrate metabolic process0.0353679485546969
GO:0006066alcohol metabolic process0.0368177256429547
GO:0016052carbohydrate catabolic process0.0374016203066091
GO:0015760glucose-6-phosphate transport0.0399072050714338
GO:0030976thiamin pyrophosphate binding0.0399072050714338
GO:0005980glycogen catabolic process0.0472715222525254
GO:0009251glucan catabolic process0.0472715222525254
GO:0003071renal regulation of systemic arterial blood pressure0.0472715222525254
GO:0004645phosphorylase activity0.0472715222525254
GO:0003997acyl-CoA oxidase activity0.0472715222525254



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell8.85e-125
endopolyploid cell8.85e-125
parenchymal cell8.85e-125
polyploid cell8.85e-125
hepatocyte8.85e-125

Uber Anatomy
Ontology termp-valuen
liver1.01e-4722
epithelial sac1.01e-4722
digestive gland1.01e-4722
epithelium of foregut-midgut junction1.01e-4722
anatomical boundary1.01e-4722
hepatobiliary system1.01e-4722
foregut-midgut junction1.01e-4722
hepatic diverticulum1.01e-4722
liver primordium1.01e-4722
septum transversum1.01e-4722
liver bud1.01e-4722
digestive tract diverticulum1.71e-4523
sac1.71e-4523
exocrine gland1.42e-4125
exocrine system1.42e-4125
abdomen element3.37e-2449
abdominal segment element3.37e-2449
abdominal segment of trunk3.37e-2449
abdomen3.37e-2449
trunk mesenchyme4.76e-2445
epithelial tube1.93e-2047
mesenchyme1.14e-1861
entire embryonic mesenchyme1.14e-1861
endocrine gland4.30e-1760
subdivision of trunk5.88e-1766
gut epithelium6.11e-1755
gland1.74e-1565
endocrine system1.31e-1372
trunk region element1.62e-1379
unilaminar epithelium1.64e-1366
endo-epithelium9.15e-1369
foregut6.84e-1280
trunk2.23e-1190
immaterial anatomical entity1.09e-1079
subdivision of digestive tract3.32e-07114
digestive system5.14e-07116
digestive tract5.14e-07116
primitive gut5.14e-07116
endoderm-derived structure7.84e-07118
endoderm7.84e-07118
presumptive endoderm7.84e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.19.79255e-05
MA0004.10.233883
MA0006.10.00352297
MA0007.10.493399
MA0009.10.506757
MA0014.11.08968e-09
MA0017.10.451723
MA0019.10.222905
MA0024.10.0520571
MA0025.10.517158
MA0027.11.39543
MA0028.10.030296
MA0029.11.52118
MA0030.10.403765
MA0031.10.346502
MA0038.10.225588
MA0040.10.529848
MA0041.10.0538632
MA0042.10.0183494
MA0043.10.340929
MA0046.10.574116
MA0048.10.153368
MA0050.10.0953037
MA0051.10.239429
MA0052.10.256174
MA0055.10.0317645
MA0056.10
MA0057.10.00610639
MA0058.10.148228
MA0059.10.27295
MA0060.15.86112e-05
MA0061.10.603718
MA0063.10
MA0066.11.5142
MA0067.10.679216
MA0068.10.0234244
MA0069.10.0737173
MA0070.10.527435
MA0071.10.0945234
MA0072.10.511779
MA0073.13.2041e-08
MA0074.10.706743
MA0076.10.00975028
MA0077.10.818231
MA0078.10.766102
MA0081.10.128132
MA0083.10.104207
MA0084.10.488154
MA0087.11.01898
MA0088.10.0499606
MA0089.10
MA0090.10.425003
MA0091.11.71766
MA0092.10.605347
MA0093.10.294224
MA0095.10
MA0098.10
MA0100.10.924193
MA0101.10.108471
MA0103.10.361259
MA0105.10.573672
MA0106.10.307878
MA0107.10.229383
MA0108.20.474655
MA0109.10
MA0111.10.317042
MA0113.10.259636
MA0114.10.105107
MA0115.10.344243
MA0116.10.337593
MA0117.10.0918843
MA0119.10.0552814
MA0122.10.329642
MA0124.10.599742
MA0125.10.494802
MA0130.10
MA0131.10.0861029
MA0132.10
MA0133.10
MA0135.10.121395
MA0136.10.0283182
MA0139.10.049538
MA0140.10.145781
MA0141.10.065669
MA0142.10.324289
MA0143.10.287115
MA0144.10.251202
MA0145.10.0326292
MA0146.10.0225541
MA0147.10.0107955
MA0148.10.421855
MA0149.18.03107
MA0062.20.00162929
MA0035.20.151487
MA0039.21.92176e-10
MA0138.20.207492
MA0002.20.266908
MA0137.20.0295637
MA0104.20.0118443
MA0047.20.396131
MA0112.20.550238
MA0065.20.102282
MA0150.10.0196919
MA0151.10
MA0152.10.894646
MA0153.10.405963
MA0154.10.0289676
MA0155.10.351004
MA0156.10.0545832
MA0157.10.277631
MA0158.10
MA0159.10.339836
MA0160.10.078082
MA0161.10
MA0162.17.5633e-06
MA0163.10.00100421
MA0164.10.538308
MA0080.20.231816
MA0018.20.0056953
MA0099.20.0780011
MA0079.20
MA0102.20.532069
MA0258.11.1758
MA0259.10.0688422
MA0442.10
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