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MCL coexpression mm9:630

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:106786962..106786974,+p@chr10:106786962..106786974
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Mm9::chr10:49442858..49442870,-p@chr10:49442858..49442870
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Mm9::chr11:118658053..118658067,-p@chr11:118658053..118658067
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Mm9::chr11:118659044..118659060,-p@chr11:118659044..118659060
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Mm9::chr11:118659078..118659088,-p@chr11:118659078..118659088
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Mm9::chr11:118730236..118730251,-p@chr11:118730236..118730251
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Mm9::chr11:118730433..118730472,-p@chr11:118730433..118730472
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Mm9::chr18:77434749..77434758,+p@chr18:77434749..77434758
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Mm9::chr18:77434917..77434945,+p@chr18:77434917..77434945
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Mm9::chr3:156225635..156225654,+p@chr3:156225635..156225654
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Mm9::chr4:154702755..154702799,-p@chr4:154702755..154702799
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
neurectoderm2.89e-2664
neural plate2.89e-2664
presumptive neural plate2.89e-2664
pre-chordal neural plate7.41e-2349
regional part of nervous system6.77e-2254
neural tube1.17e-2152
neural rod1.17e-2152
future spinal cord1.17e-2152
neural keel1.17e-2152
ecto-epithelium2.62e-2173
brain1.69e-2047
future brain1.69e-2047
regional part of brain2.03e-1946
anterior neural tube1.35e-1640
ectoderm-derived structure1.95e-1695
ectoderm1.95e-1695
presumptive ectoderm1.95e-1695
gray matter5.20e-1634
regional part of forebrain1.34e-1539
forebrain1.34e-1539
future forebrain1.34e-1539
central nervous system1.50e-1573
brain grey matter5.20e-1529
regional part of telencephalon5.20e-1529
telencephalon5.20e-1529
nervous system8.10e-1575
cerebral cortex1.12e-1421
cerebral hemisphere1.12e-1421
pallium1.12e-1421
structure with developmental contribution from neural crest3.92e-1492
occipital lobe4.10e-1410
visual cortex4.10e-1410
neocortex4.10e-1410
regional part of cerebral cortex3.26e-1317
eye2.47e-079
camera-type eye2.47e-079
simple eye2.47e-079
immature eye2.47e-079
ocular region2.47e-079
visual system2.47e-079
face2.47e-079
optic cup2.47e-079
optic vesicle2.47e-079
eye primordium2.47e-079


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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