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MCL coexpression mm9:931

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Phase1 CAGE Peaks

 Short description
Mm9::chr12:120476420..120476474,-p2@Itgb8
Mm9::chr12:120476479..120476491,-p14@Itgb8
Mm9::chr12:120476493..120476534,-p3@Itgb8
Mm9::chr12:120476537..120476565,-p7@Itgb8
Mm9::chr12:120476571..120476595,-p8@Itgb8
Mm9::chr13:78341625..78341649,+p1@ENSMUST00000123998
p1@uc007rhf.1
Mm9::chr18:31402796..31402840,-p@chr18:31402796..31402840
-
Mm9::chrX:82018139..82018149,+p28@Dmd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0045213neurotransmitter receptor metabolic process0.0214694502798881
GO:0001573ganglioside metabolic process0.0214694502798881
GO:0046716muscle maintenance0.0214694502798881
GO:0006687glycosphingolipid metabolic process0.0214694502798881
GO:0005626insoluble fraction0.0214694502798881
GO:0016010dystrophin-associated glycoprotein complex0.0214694502798881
GO:0006664glycolipid metabolic process0.0220869754310361
GO:0006672ceramide metabolic process0.0220869754310361
GO:0043112receptor metabolic process0.0220869754310361
GO:0046519sphingoid metabolic process0.0220869754310361
GO:0005605basal lamina0.0220869754310361
GO:0042383sarcolemma0.0220869754310361
GO:0030018Z disc0.0220869754310361
GO:0008305integrin complex0.0220869754310361
GO:0031674I band0.0220869754310361
GO:0045121lipid raft0.0220869754310361
GO:0030055cell-matrix junction0.0220869754310361
GO:0006665sphingolipid metabolic process0.0250271009001221
GO:0044459plasma membrane part0.0284517783662214
GO:0005604basement membrane0.0284517783662214
GO:0007160cell-matrix adhesion0.0284517783662214
GO:0030017sarcomere0.0284517783662214
GO:0043234protein complex0.0284517783662214
GO:0031589cell-substrate adhesion0.0284517783662214
GO:0044449contractile fiber part0.0284517783662214
GO:0016323basolateral plasma membrane0.0284517783662214
GO:0043235receptor complex0.0284517783662214
GO:0030016myofibril0.0284517783662214
GO:0043292contractile fiber0.0284517783662214
GO:0007229integrin-mediated signaling pathway0.0317880550489242
GO:0044420extracellular matrix part0.0317880550489242
GO:0007519skeletal muscle development0.0317962327730742
GO:0005886plasma membrane0.0318918771747741
GO:0032991macromolecular complex0.0333212854780622
GO:0014706striated muscle development0.0370887258834726
GO:0007275multicellular organismal development0.0370887258834726
GO:0006643membrane lipid metabolic process0.0430424443421253
GO:0005792microsome0.0430424443421253
GO:0042598vesicular fraction0.0430424443421253
GO:0007517muscle development0.0443611126509407
GO:0007268synaptic transmission0.0495036423669913



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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