NonredundantMotifs:19: Difference between revisions
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|entrez_gene_id=51176
|motif_cluster_2013_march_motif_members= /SWISSREGULON:LEF1_TCF7_TCF7L1,2.p2 /HOMER:TCF7L2_K562-TCF7L2-ChIP-Seq(GSE29196)~TCF3_mES-Tcf3...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=51176 | |entrez_gene_id=51176 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:LEF1_TCF7_TCF7L1,2.p2 /HOMER:TCF7L2_K562-TCF7L2-ChIP-Seq(GSE29196)~TCF3_mES-Tcf3-ChIP-Seq~TCF4_Hct116-Tcf4-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0442.1;SOX10 /HOCOMOCO:TF7L2_f1~LEF1_f1~SOX10_si~SOX18_f1~SOX4_f1~TCF7_f1 /SWISSREGULON:LEF1_TCF7_TCF7L1,2.p2 /HOMER:TCF7L2_K562-TCF7L2-ChIP-Seq(GSE29196)~TCF3_mES-Tcf3-ChIP-Seq~TCF4_Hct116-Tcf4-ChIP-Seq /UNIPROBE:Sox12_secondary;SCI09~Tcf7l2_primary;SCI09~Lef1_primary;SCI09~Tcf3_primary;SCI09~Tcf7_primary;SCI09 | ||
|name=known19 | |name=known19 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known19
- db :HOCOMOCO
- Id :LEF1_f1
- name :
- score :0.1646880722926334
- External refs:
- Internal refs:
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Sub Motif Members
