NonredundantMotifs:70: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;35.736564;43.346026;31.927726;21.224408!2;40.319537;25.097355;48.676;18.141832!3;19.653445;69.263047;29.079804;14.238428!4;70.056897;0.938204;36.675475;24.564148!5;68.753828;8.494474;39.928708;15.057714!6;1.830617;65.164424;35.83389;29.405793!7;0;2.885366;1.829134;127.520224!8;1.886979;119.265036;3.616792;7.465917!9;0;130.390775;0;1.843949!10;0;113.360071;0;18.874653!11;29.86381;70.231678;0;32.139236!12;60.782575;10.508074;48.745422;12.198653!13;30.473341;0.902129;99.003523;1.855731!14;52.429385;0;76.90704;2.898299!15;0.972895;0.908878;130.352951;0!16;82.413608;9.26798;32.023964;8.529172!17;51.490577;32.26245;47.509697;0.972!18;9.533474;53.999977;32.92053;35.780743!19;32.68526;19.73632;53.784695;26.028449!20;3.69832;29.716713;54.18171;44.637981!21;28.019157;10.473004;91.854299;1.888264!22;18.868819;38.889143;31.993486;42.483276 | |||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /JASPAR:MA0154.1;EBF1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:EBF1.p2 /JASPAR:MA0154.1;EBF1 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /HOCOMOCO:COE1_f2 | ||
|name=known70 | |name=known70 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known70
- db :SWISSREGULON
- Id :EBF1.p2
- name :
- score :0.893570516768295
- External refs:
- Internal refs:
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Sub Motif Members
