Personal tools

Difference between revisions of "NonredundantMotifs:70"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 1: Line 1:
 
{{Known_motif
 
{{Known_motif
 
|PWM=P0;A;C;G;T!1;35.736564;43.346026;31.927726;21.224408!2;40.319537;25.097355;48.676;18.141832!3;19.653445;69.263047;29.079804;14.238428!4;70.056897;0.938204;36.675475;24.564148!5;68.753828;8.494474;39.928708;15.057714!6;1.830617;65.164424;35.83389;29.405793!7;0;2.885366;1.829134;127.520224!8;1.886979;119.265036;3.616792;7.465917!9;0;130.390775;0;1.843949!10;0;113.360071;0;18.874653!11;29.86381;70.231678;0;32.139236!12;60.782575;10.508074;48.745422;12.198653!13;30.473341;0.902129;99.003523;1.855731!14;52.429385;0;76.90704;2.898299!15;0.972895;0.908878;130.352951;0!16;82.413608;9.26798;32.023964;8.529172!17;51.490577;32.26245;47.509697;0.972!18;9.533474;53.999977;32.92053;35.780743!19;32.68526;19.73632;53.784695;26.028449!20;3.69832;29.716713;54.18171;44.637981!21;28.019157;10.473004;91.854299;1.888264!22;18.868819;38.889143;31.993486;42.483276
 
|PWM=P0;A;C;G;T!1;35.736564;43.346026;31.927726;21.224408!2;40.319537;25.097355;48.676;18.141832!3;19.653445;69.263047;29.079804;14.238428!4;70.056897;0.938204;36.675475;24.564148!5;68.753828;8.494474;39.928708;15.057714!6;1.830617;65.164424;35.83389;29.405793!7;0;2.885366;1.829134;127.520224!8;1.886979;119.265036;3.616792;7.465917!9;0;130.390775;0;1.843949!10;0;113.360071;0;18.874653!11;29.86381;70.231678;0;32.139236!12;60.782575;10.508074;48.745422;12.198653!13;30.473341;0.902129;99.003523;1.855731!14;52.429385;0;76.90704;2.898299!15;0.972895;0.908878;130.352951;0!16;82.413608;9.26798;32.023964;8.529172!17;51.490577;32.26245;47.509697;0.972!18;9.533474;53.999977;32.92053;35.780743!19;32.68526;19.73632;53.784695;26.028449!20;3.69832;29.716713;54.18171;44.637981!21;28.019157;10.473004;91.854299;1.888264!22;18.868819;38.889143;31.993486;42.483276
|entrez_gene_id=
+
|entrez_gene_id=EBF1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EBF1.p2 /JASPAR:MA0154.1;EBF1 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /HOCOMOCO:COE1_f2
+
|motif_cluster_2013_march_motif_members= /JASPAR:MA0154.1;EBF1 /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /HOCOMOCO:COE1_f2
 
|name=known70
 
|name=known70
 
|representative_motif_db=SWISSREGULON
 
|representative_motif_db=SWISSREGULON
 
|representative_motif_id=EBF1.p2
 
|representative_motif_id=EBF1.p2
|representative_motif_name=  
+
|representative_motif_name=EBF1
 
|score=0.893570516768295
 
|score=0.893570516768295
|uniprot_entry_name=
+
|uniprot_entry_name=EBF1
 
}}
 
}}
 
[[Category:Motif]]
 
[[Category:Motif]]
 
[[Category:MotifCluster2013March]]
 
[[Category:MotifCluster2013March]]

Revision as of 03:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known70
  • db :SWISSREGULON
  • Id :EBF1.p2
  • name :EBF1
  • score :0.893570516768295
  • External refs:
EntrezGene:EBF1
UniProt:EBF1

  • Internal refs:
EntrezGene:EBF1


Motif matrix
P0ACGT
135.73656443.34602631.92772621.224408
240.31953725.09735548.67618.141832
319.65344569.26304729.07980414.238428
470.0568970.93820436.67547524.564148
568.7538288.49447439.92870815.057714
61.83061765.16442435.8338929.405793
702.8853661.829134127.520224
81.886979119.2650363.6167927.465917
90130.39077501.843949
100113.360071018.874653
1129.8638170.231678032.139236
1260.78257510.50807448.74542212.198653
1330.4733410.90212999.0035231.855731
1452.429385076.907042.898299
150.9728950.908878130.3529510
1682.4136089.2679832.0239648.529172
1751.49057732.2624547.5096970.972
189.53347453.99997732.9205335.780743
1932.6852619.7363253.78469526.028449
203.6983229.71671354.1817144.637981
2128.01915710.47300491.8542991.888264
2218.86881938.88914331.99348642.483276

Sub Motif Members