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Protocols: Difference between revisions

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* Protocols:GOstat_on_coexpression_cluster
* Protocols:GOstat_on_coexpression_cluster
* Protocols:GOstat_on_MARA_motif_target
* Protocols:GOstat_on_MARA_motif_target
awas performed using GOstat (PMID:14962934) on gene lists with all known genes (human or mouse) as background. term significant at FDR 5% (Benjamin-Hochberg) were retained.
was performed using GOstat (PMID:14962934) on gene lists with all known genes (human or mouse) as background. term significant at FDR 5% (Benjamin-Hochberg) were retained.
* [[Protocols:Sample_enrichment_analysis_on_CAGE_peak_expression]]
* [[Protocols:Sample_enrichment_analysis_on_CAGE_peak_expression]]
* [[Protocols:Sample_enrichment_analysis_on_coexpression_cluster]]
* [[Protocols:Sample_enrichment_analysis_on_coexpression_cluster]]
* [[Protocols:Motif_Activity_Response_Analysis(MARA)]]
* [[Protocols:Motif_Activity_Response_Analysis(MARA)]]

Revision as of 11:38, 3 September 2012

Assay pipeline

Computational Pipeline

Computational analysis

The Gene Ontology enrichment analysis for the following data sets

  • Protocols:GOstat_on_coexpression_cluster
  • Protocols:GOstat_on_MARA_motif_target

was performed using GOstat (PMID:14962934) on gene lists with all known genes (human or mouse) as background. term significant at FDR 5% (Benjamin-Hochberg) were retained.