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Template:Coexpression clusters: Difference between revisions

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var motifs = ['1-CAATGACATC','1-CSGATGAAT','1-GGAGGAGRAGG','1-TATKWNTTCMGTGTY','1-TGAGTCATTTCCT','1-TGGTCCYSCTGGTCC','1-TWTTWVNSCS','10-ACTTCCTCTTCC','10-ATCGATTG','10-CGCGTGTTA','10-GCTTHCTCAT','10-GGGAAGTGACG','10-GGTTTCTTTT','10-GTAACHDC','10-GTGATGTCACT','10-GTTTCTACG','10-TCCTCCGATT','10-TCTATGAC','10-TCTBACKA','10-TGCGTCATTT','10-TGTCACTGCG','10-VGGAAACGAC','10-WGACAAC','10-YGAGTCHYTD','11-AACGAATCGA','11-AGGCAGTACCTC','11-CGGGGAAATTAC','11-CGTCTGCGTA','11-GATTTCACAACC','11-GCTGTGACGA','11-GTAACGCCCC','11-TCGGGGTGTTTT','11-TSACGCSTCAGT','11-TTTGAGGAAGTTG','11-WACGYACGTG','11-WGTGKKTTTT','12-CGCGGCGGCGGCT','12-CSCCYTTTWA','12-GCNGTGTRAC','12-GTAGCWCSGC','12-GWTYKNKNTTG','12-GYTTGWTATTG','12-SSARTSACMRCA','12-TGCAGTNTTT','12-TGWCACGGCG','13-AATTCCG','13-CBTACGCAA','13-CGTCACAGGAAAC','13-GGATTTGT','13-GGCTGKTACT','13-GTACTTTCCA','13-GTGTCABACG','13-MGCTGACACACGC','13-STTYSWCWTCY','14-ACWTCYTGCTT','14-ATTACGC','14-CACTTCCGTAA','14-RSCGSWVTCT','14-TACGCCC','14-TSTCRGCTR','14-TTAMCGKAA','15-AGRMAACCG','15-CWTCTGACTV','15-NNNTDAGHAA','15-TKABWMGC','16-ATGACTCACTT','16-GCTTYCTS','16-GTKACGDWGC','16-RBYKBTWACG','16-TCAGCTGACG','18-GAAGTGGGTGG','2-AATGCGTT','2-AWTSGCT','2-CCTTTTAA','2-CGBTDATTA','2-GATYGSAS','2-SVGTTTAAA','2-TATATAGCCG','2-TTCAAATCTCCCGC','2-TTWAACCS','3-AAACYGGTTTG','3-AGAAAAVGGAACT','3-ATAAADCGC','3-AWTTSSYS','3-CCCCCCTTTTTT','3-CGCCCATT','3-CGCTATTTAAAC','3-GATGATGAT','3-GCGGGAGGGAGT','3-GCGTTTGAAT','3-MASTTCCCCTTW','3-TTTCGAAT','4-AAAACGCGC','4-AAAWRCG','4-CGGAGAGATA','4-CGTRGTTT','4-CTCTCTCTC','4-GAAGTRCCCAAGAAA','4-GCAAATCGGA','4-GCYTCTYTBTTTTT','4-GGGTTAAA','4-HCTTHYBCTD','4-NTGTTTTTTTKTC','4-SGSTTAWA','4-TAAAAAGACAGC','4-TTAAACCG','4-TTTAAAGCGG','4-TTYCTCTKCWGMR','5-ATTGGGCGG','5-AWTKGKCGVG','5-CCCGCCTTTA','5-CCGGATTTA','5-CGGGAAACTAC','5-CGRAWAT','5-CGTCACTMGT','5-CGTCTGATA','5-GCGAATA','5-GCGATTCAAA','5-GCTTSYTGTTTW','5-GGTGRTTDTT','5-GTTGTTGC','5-NCTSTCTCTTTN','5-SBGTYRTYWGRS','5-TCATTTGC','5-TCTGCGTCAC','5-TGWTTKCCWG','5-TTAATCAGCC','5-WCCGWTAR','6-AAAAACGCCC','6-AAGTTCCGC','6-AATCTCGC','6-AATTAGAGCG','6-ACGCTTGTTT','6-AGGAAGTGAYGYAA','6-AGTTCTGTTTT','6-ATATTTGGCA','6-ATGATTAGTCA','6-ATTAAAGGCG','6-CGCCTAAA','6-CGHYWRA','6-CGTTTCA','6-CTGATYACA','6-CTTCCTGTCAGAG','6-CTTGTGA','6-GAGAGGGGGTGG','6-GCGGTTTTTT','6-GCTGCAAATAGA','6-GTTAACCAATC','6-HNCGKHTKWGRA','6-HWDHHWNCASC','6-TCGGCTG','6-TDTAAWSAG','6-TTACAGC','6-TTAHWHCG','6-YWARCGCN','7-AAAAGMGCS','7-AGTCATATGAC','7-AVAVAGSAAAST','7-CGTCTGA','7-CGTTGCTA','7-GCAGAYTK','7-GCAKYWTTTWT','7-GCTGCATT','7-GCWGCATT','7-GTGTGTGTGT','7-GTKTGWCWC','7-SCGYTTAA','7-TGTTTCT','7-TSTCWCG','7-TTTYTTTTTTCTG','8-AGCAGAAGTG','8-ATCCRAGC','8-CACACYCMCACA','8-CATACGC','8-CGGWGAYW','8-GAAACAACCT','8-GAATGAAAGCG','8-GGHAACT','8-GTTGTTKKGKT','8-HTTTGCGC','8-MHRGTVACTTBN','8-SGAAATGACA','8-TAWAARGCG','8-TBTSTGTBTGC','8-TCGGAGT','8-TGCTGATT','8-TTTGCGGAAGC','8-WNHTTDCGTKTYW','9-AAACAACGCC','9-AAACTGCA','9-AATRCATCGC','9-ACTTMCTHC','9-CGGAAACAA','9-CTGTTGCGT','9-CTSASTCACTG','9-GATCCGCTA','9-GCTAGCAAAA','9-GGGGTTT','9-GTAGGAT','9-HGASWSVGYG','9-RTKACAA','9-TAGTTACCG','9-TATAWACGC','9-TATCCGMH','9-TDDCRNMASM','9-TTTCSCT','9-VCTTKCTKC','AAAAGCACTGC,motif961','AAAARAAG,motif736','AAACCCCCCC,motif448','AAACTATA,motif684','AAATAGGGAAGT,motif184','AAGACTACCA,motif544','AAGATCGAS,motif641','AAGCAGGAA,motif523','AATGGGG,motif928','AATTCCCGG,motif577','AAYAATC,motif540','ACGAGACGGATGA,motif936','ACGTCACAA,motif25','AGACTCAGA,motif213','AGAGAAAGAG,motif627','AGCASAGGA,motif488','AGKAGGACCA,motif546','AGTCTCAAGTT,motif953','AGTTTCCGC,motif855','AHR_si','AIRE','AIRE_f2','ALX1','AP2A_f2','ARAGGGGK,motif561','ARI3A_do','ARI5B_f1','AR_LNCAP-AR-ChIP-Seq/Homer','ATAGCGAC,motif639','ATCATTTCC,motif740','ATF5_si','ATF6','ATGATGGTGGC,motif457','ATGGAGGTCGTC,motif943','ATTGGCGGCG,motif630','ATYACCC,motif728','BPTF_si','CAAACTTAGCC,motif480','CAATGATGG,motif925','CACACTTTTTA,motif844','CACGAAG,motif790','CACTTCCTTCCT,motif281','CAGAGTTCTAG,motif792','CARGWTGY,motif333','CATCCATGTC,motif545','CATTAGGACCAG,motif719','CATTRTGACG,motif6','CAYAAST,motif606','CCAATCCGGT,motif823','CCAGTACA,motif794','CCCACAGACTCAG,motif858','CCCCCTATTA,motif248','CCCCCTCTCTCC,motif580','CCCGAAC,motif795','CCCGATCC,motif958','CCGCCAATYC,motif849','CCGTCTYT,motif741','CDC5L_si','CDX1,2,4','CDX2_f1','CEBPB_ThioMac-CEBPb-ChIP-Seq/Homer','CEBPB_f1','CGATCCGGAT,motif767','CGCTCTCKCT,motif771','CGCTTAAA,motif359','CGGAAACGGAA,motif609','CGGCAGCGGA,motif385','CGGCTTAAA,motif768','CGTVTCAYCA,motif126','CKACTAC,motif854','CNhs10624_bl_f0','CNhs10625_bl_f0','CNhs10632_bl_f0','CNhs10633_bl_f0','CNhs10634_bl_f2','CNhs10636_bu_f0','CNhs10643_bu_f2','CNhs10731_bl_f2','CNhs10734_bu_f2','CNhs10751_bu_f2','CNhs10752_bl_f1','CNhs10839_bl_f1','CNhs10843_bu_f2','CNhs10846_bu_f1','CNhs10846_bu_f2','CNhs11047_bu_f2','CNhs11051_bl_f2','CNhs11051_bu_f2','CNhs11068_bl_f2','CNhs11073_bl_f1','CNhs11073_bl_f2','CNhs11185_bl_f2','CNhs11245_bl_f2','CNhs11253_bl_f1','CNhs11257_bl_f2','CNhs11258_bu_f2','CNhs11265_bl_f2','CNhs11267_bl_f2','CNhs11270_bl_f2','CNhs11276_bl_f2','CNhs11279_bu_f2','CNhs11284_bl_f2','CNhs11287_bu_f1','CNhs11290_bl_f2','CNhs11331_bl_f2','CNhs11332_bl_f1','CNhs11341_bu_f1','CNhs11344_bl_f2','CNhs11354_bl_f2','CNhs11372_bl_f2','CNhs11377_bl_f2','CNhs11380_bl_f1','CNhs11380_bu_f0','CNhs11716_bu_f2','CNhs11725_bl_f1','CNhs11725_bu_f2','CNhs11729_bl_f2','CNhs11741_bu_f1','CNhs11747_bu_f2','CNhs11750_bl_f0','CNhs11756_bl_f2','CNhs11756_bu_f1','CNhs11774_bu_f2','CNhs11777_bu_f2','CNhs11781_bl_f0','CNhs11781_bu_f1','CNhs11786_bl_f2','CNhs11786_bu_f1','CNhs11789_bl_f2','CNhs11793_bu_f1','CNhs11811_bl_f2','CNhs11822_bl_f1','CNhs11822_bl_f2','CNhs11828_bl_f2','CNhs11828_bu_f0','CNhs11828_bu_f1','CNhs11828_bu_f2','CNhs11833_bl_f2','CNhs11840_bl_f0','CNhs11840_bl_f2','CNhs11842_bl_f0','CNhs11848_bu_f2','CNhs11853_bu_f1','CNhs11862_bl_f2','CNhs11882_bl_f2','CNhs11882_bu_f2','CNhs11892_bl_f2','CNhs11893_bl_f1','CNhs11893_bu_f2','CNhs11931_bu_f2','CNhs11986_bl_f2','CNhs11986_bu_f1','CNhs11990_bl_f1','CNhs11990_bl_f2','CNhs12001_bu_f0','CNhs12008_bl_f1','CNhs12008_bu_f2','CNhs12013_bu_f2','CNhs12028_bl_f2','CNhs12030_bl_f0','CNhs12035_bu_f0','CNhs12036_bu_f2','CNhs12040_bu_f2','CNhs12043_bu_f1','CNhs12065_bl_f2','CNhs12087_bl_f0','CNhs12087_bu_f1','CNhs12092_bu_f2','CNhs12093_bu_f2','CNhs12096_bl_f2','CNhs12098_bu_f2','CNhs12102_bl_f1','CNhs12103_bl_f1','CNhs12105_bl_f2','CNhs12128_bu_f2','CNhs12192_bu_f0','CNhs12316_bu_f2','CNhs12323_bu_f0','CNhs12341_bl_f2','CNhs12345_bu_f2','CNhs12348_bl_f1','CNhs12494_bl_f0','CNhs12494_bu_f1','CNhs12497_bu_f2','CNhs12498_bl_f2','CNhs12500_bl_f2','CNhs12500_bu_f2','CNhs12502_bl_f1','CNhs12518_bu_f0','CNhs12522_bl_f0','CNhs12523_bl_f1','CNhs12524_bu_f2','CNhs12525_bl_f0','CNhs12530_bu_f2','CNhs12545_bl_f2','CNhs12546_bu_f2','CNhs12566_bl_f1','CNhs12574_bl_f1','CNhs12622_bl_f1','CNhs12623_bl_f2','CNhs12623_bu_f2','CNhs12625_bl_f1','CNhs12625_bu_f2','CNhs12626_bu_f0','CNhs12626_bu_f2','CNhs12627_bu_f2','CNhs12703_bl_f2','CNhs12727_bl_f1','CNhs12733_bl_f2','CNhs12825_bl_f2','CNhs12838_bl_f1','CNhs12839_bu_f2','CNhs12846_bl_f1','CNhs12846_bl_f2','CNhs12849_bu_f0','CNhs12849_bu_f1','CNhs12851_bu_f0','CNhs12856_bu_f2','CNhs12857_bu_f2','CNhs12859_bu_f2','CNhs12920_bl_f2','CNhs12922_bu_f1','CNhs12952_bu_f0','CNhs13059_bl_f0','CNhs13060_bl_f1','CNhs13063_bl_f2','CNhs13063_bu_f1','CNhs13068_bl_f2','CNhs13099_bl_f0','CNhs13099_bu_f2','CNhs13156_bu_f0','CNhs13435_bu_f1','CNhs13439_bl_f1','CNhs13449_bl_f1','CNhs13458_bl_f1','CNhs13458_bl_f2','CNhs13458_bu_f2','CNhs13460_bu_f2','CNhs13464_bu_f2','CNhs13480_bl_f0','CNhs13498_bu_f1','CNhs13505_bu_f1','CNhs13549_bu_f2','CNhs13550_bl_f1','CNhs13793_bl_f2','CNhs13800_bu_f2','CNhs13801_bl_f2','CNhs13847_bu_f0','COE1_f2','CRACCWA,motif272','CRATCGC,motif590','CREB1_f1','CRX_Retina-Crx-ChIP-Seq/Homer','CSAAYWAG,motif787','CTACCAGTAC,motif314','CTACTTC,motif605','CTBGTCBTC,motif677','CTCCTGTTCC,motif443','CTCF_f2','CTCTCGATC,motif564','CTCTTAGTCATG,motif820','CTCTTCCAGTTC,motif857','CTSTTTCTTTAAG,motif929','CTTCTTTCC,motif732','DBP','DDIT3_f1','DMC1_Testis-DMC1-ChIP-Seq/Homer','E2F4_do','EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)/Homer','EGR1_K562-EGR1-ChIP-Seq/Homer','EOMES_f1','EPAS1_si','ESR1_do','ETV1_GIST48-ETV1-ChIP-Seq/Homer','EVI1_f1','FOSL2_f1','FOXA1_LNCAP-FOXA1-ChIP-Seq/Homer','FOXC2_f1','FOXD1_si','FOXM1','FOXO1_si','FOXP3','FOXP3_f1','FOX(C1,C2)','FUBP1_f1','GAAAAGC,motif664','GAAGSCG,motif658','GAATTSGA,motif806','GAGAGACAAAGG,motif729','GATA1..3','GATA1_si','GATCGCT,motif797','GATTGGTGCAG,motif851','GATTTTTWT,motif458','GAYCAGG,motif573','GCAGGAAACCACAG,motif220','GCCGCAAAC,motif342','GCCGCTTTAA,motif411','GCGCGCG,motif507','GCGGACTGAA,motif633','GCM1_f1','GCTCCGCTC,motif508','GFI1_f1','GGAAGAACTAG,motif201','GGACAAG,motif387','GGACCCCCTA,motif709','GGACCGCCG,motif717','GGAGKYTTAA,motif746','GGATGACGAA,motif197','GGCAACTTCT,motif638','GGGAATTTTTG,motif407','GGGGGAAAGAAA,motif661','GGGTGACTCGTA,motif209','GGGTTGCGTCA,motif101','GGTGACACAKC,motif113','GLI3_si','GTACGRC,motif321','GTAGATGTTGA,motif291','GTAGTCGA,motif591','GTATTAGG,motif834','GTCACCCTCA,motif402','GTGAATG,motif414','GTGACTSGG,motif114','GTTCCTATT,motif134','GTTGCTCAACAG,motif852','GTTGTAGCCC,motif679','GTWCAACA,motif210','GZF1','HES1_f1','HEY2_f1','HLTF_f1','HMGA2_f1','HNF1A','HNF4A_f1','HNF4G_f1','HNF6_f1','HOXC9_Ainv15-Hoxc9-ChIP-Seq/Homer','HOX(A5,B5)','HSF1_f2','HXA13_f1','HXB7_si','HXC8_f1','HXD13_f1','HXD4_f1','HXD9_f1','INSM1_f1','IRF2_f1','IRF5_f1','ISL1_f1','KAISO_f1','KCCGCCDY,motif582','KLF12','KLF4_mES-Klf4-ChIP-Seq/Homer','KLF8_f1','LHX2_f1','LHX3,4','MAFA_f1','MCR_f1','MEF2(A,B,C,D)','MEIS1_f2','MLXPL_f1','MSX2_f1','MTE(core)','MTF1_f1','MYBB_f1','MYB_ERMYB-Myb-ChIPSeq(GSE22095)/Homer','NAAAGTT,motif944','NANOG_mES-Nanog-ChIP-Seq/Homer','NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer','NFAC2_f1','NFAT5_f1','NFATC1_motifA:Jurkat-NFATC1-ChIP-Seq/Homer','NFIX','NFKB1_REL_RELA','NFYB_f1','NKX2-1,4','NKX21_f1','NKX22_si','NKX3-2','NR0B1_si','NR1H4_f1','NR1I3_f2','NR1I3_si','NR2C2_Hela-TR4-ChIP-Seq/Homer','NR6A1_do','NRF1_MCF7-NRF1-ChIP-Seq/Homer','P73_si','PAX3_Rh4-PAX3:FKHR-ChIP-Seq/Homer','PAX4','PAX5_f1','PAX5_motifB:GM12878-PAX5-ChIP-Seq/Homer','PAX6_f1','PAX8_f1','PBX3_GM12878-PBX3-ChIP-Seq/Homer','PKNX1_si','PLAG1_f1','PLAG1_si','PO3F2_si','PO5F1_do','PO6F1_f1','POU1F1','POU3F1..4','POU5F1_mES-Oct4-ChIP-Seq/Homer','PRGR_f1','PROP1_f1','PRRX2_f1','PTF1A_f1','PURA_f1','RAGAGAGAGAGAG,motif269','RARA_f1','RARG_do','REST_f1','RFX1_NPC-Rfx1-ChIP-Seq/Homer','RGAAAGSAGAAG,motif654','RGCGGCSGC,motif262','RORA_f1','RRCGAACC,motif176','RREB1_si','RTATACTKT,motif723','RUNX1..3','RXR(A,B,G)','SGAGMKTAK,motif947','SMAD3_f1','SNAI2_f1','SOX17_f2','SOX18_f1','SOX2','SP1_f1','SP4_f1','SPDEF_VCaP-SPDEF-ChIP-Seq/Homer','SPZ1','SREBP1A_HepG2-Srebp1a-ChIP-Seq/Homer','SRF_do','STAT4_CD4-Stat4-ChIP-Seq/Homer','STCGWAG,motif238','STTCGVC,motif597','SUH_f1','TAACTGTACA,motif845','TACAGTATTC,motif699','TACCGGATC,motif263','TACCGGT,motif604','TACCTCCGC,motif788','TACTGYAG,motif560','TAGAMCCTAT,motif779','TAGGAAAC,motif60','TAGGCGA,motif945','TAGTCTGACG,motif940','TATCCCATT,motif724','TBP','TBX20_Heart-Tbx20-ChIP-Seq(GSE29636)/Homer','TBX3_f1','TBX5_HL1-Tbx5.biotin-ChIP-Seq/Homer','TCATCAGTTCC,motif933','TCATCCACATC,motif938','TCCTATTG,motif697','TCGCGCYG,motif706','TCKCGCT,motif355','TCSAGMT,motif441','TCSCGAGCTG,motif769','TCTCGCT,motif467','TCTCKCTC,motif323','TCTTCAA,motif816','TCTTCTTCTTC,motif479','TEAD1_f1','TEF','TF7L2_f1','TFCP2L1_mES-Tfcp2l1-ChIP-Seq/Homer','TFDP1','TGAATTGGCTG,motif563','TGACATCATAATG,motif44','TGACCAA,motif340','TGACGAA,motif9','TGCAGCATTA,motif668','TGGACGAA,motif481','TGGGAADTGTAGT,motif425','TGGTYCTMRT,motif814','TGIF1_f1','TGIF1_si','TGTGTGCG,motif245','THB_do','TKAAAGBGRCA,motif293','TLX1..3_NFIC(dimer)','TLX1_f1','TMCGYCR,motif946','TOPORS','TP53_Saos-p53-ChIP-Seq/Homer','TTAAGCGGC,motif366','TTATTCTGCTG,motif789','TTCCKGTCYG,motif829','TTCGTTCC,motif579','TTCTGCACC,motif618','TTCTTCAGCG,motif357','TTGATGATGATG,motif935','TTGCAGCGTA,motif613','TTGGCTCGGC,motif500','TTGGGRAATTTA,motif177','TTGTAGGT,motif707','TTHCTVTW,motif188','TTTTTCGCGGCT,motif429','TTYCGSTTC,motif442','TYTYTYTYTYYYYY,motif247','USF1_GM12878-Usf1-ChIP-Seq/Homer','VDR_f2','WYCKMKCG,motif815','YCYCTTT,motif332','YTCKCTT,motif512','YTGGTCCTGVT,motif924','ZBT7A_f1','ZBTB16','ZBTB4!METH_f1','ZBTB4_si','ZBTB6_si','ZEP2_si','ZFP161','ZN219_f1','ZN333_f1','ZN350_f1','ZN384_f1','ZN423_f1','ZN589_f1','ZNF143','motif10','motif1026','motif103','motif1032','motif1044','motif1049','motif106','motif1068','motif1097','motif11','motif119','motif123','motif125','motif134','motif136','motif143','motif145','motif162','motif177','motif183','motif189','motif196','motif198','motif199','motif210','motif218','motif222','motif233','motif238','motif247','motif252','motif260','motif261','motif263','motif27','motif282','motif29','motif290','motif293','motif297','motif3','motif30','motif300','motif301','motif307','motif313','motif316','motif324','motif33','motif335','motif351','motif357','motif359','motif361','motif365','motif37','motif373','motif378','motif382','motif41','motif415','motif424','motif432','motif44','motif440','motif441','motif443','motif445','motif459','motif46','motif461','motif463','motif468','motif475','motif477','motif478','motif486','motif489','motif494','motif498','motif499','motif515','motif516','motif517','motif527','motif550','motif553','motif554','motif558','motif560','motif561','motif563','motif568','motif57','motif577','motif585','motif588','motif602','motif606','motif61','motif614','motif624','motif627','motif64','motif647','motif66','motif660','motif667','motif668','motif670','motif679','motif680','motif682','motif684','motif686','motif688','motif74','motif75','motif77','motif80','motif816','motif822','motif827','motif830','motif835','motif837','motif839','motif843','motif858','motif861','motif867','motif87','motif882','motif885','motif886','motif890','motif895','motif897','motif898','motif9','motif90','motif906','motif909','motif915','motif929','motif931','motif935','motif943','motif944','motif950','motif953','motif956','motif957','motif963','motif965','motif969','motif97','motif970','motif977','motif981','motif990','motif991','motif999','motif_AAGTCN','motif_ACAGTN','motif_ACNGGT','motif_ACTGGN','motif_AGGGCN','motif_AGNCGT','motif_AGNCTT','motif_ANAGCT','motif_ANCAGT','motif_ANCGCT','motif_ANCTGT','motif_ANGACT','motif_ANGCCT','motif_ANGTCT','motif_ANTGCT','motif_ATGNCT','motif_ATNGCT','motif_CAAGTNNCA','motif_CACNGT','motif_CAGNAT','motif_CAGNCT','motif_CAGNGT','motif_CAGTNT','motif_CANCTG','motif_CANGTT','motif_CANTTG','motif_CATGNT','motif_CCAGCN','motif_CCANGT','motif_CCANTG','motif_CCCTNA','motif_CCNAGT','motif_CCNGAT','motif_CCNGCA','motif_CCNGGA','motif_CGACNT','motif_CGANCT','motif_CGNTGA','motif_CNAATG','motif_CNACTG','motif_CNAGGT','motif_CNAGTCTC','motif_CNAGTT','motif_CNATGG','motif_CNCAGT','motif_CNCATG','motif_CNGAAT','motif_CNGACT','motif_CNGATG','motif_CNGATT','motif_CNGCAG','motif_CNGCAT','motif_CNGCCA','motif_CNGGAT','motif_CNGGTA','motif_CTAGNG','motif_CTAGNT','motif_CTANGG','motif_CTATGN','motif_CTCANG','motif_CTGGGN','motif_CTGGNG','motif_CTNAGT','motif_CTNATG','motif_CTNGAT','motif_CTNTAG','motif_CTTANG','motif_CTTNAG','motif_GAACNT','motif_GAAGNT','motif_GACNCT','motif_GACNGT','motif_GACNTG','motif_GAGNCT','motif_GANACT','motif_GANCAT','motif_GANGTC','motif_GANTCT','motif_GANTTC','motif_GATCTN','motif_GATNTC','motif_GCAANT','motif_GCAATN','motif_GCACNT','motif_GCANTG','motif_GCNACT','motif_GCNCAT','motif_GCNGAT','motif_GCTCANGG','motif_GCTNAT','motif_GGACTN','motif_GGAGCN','motif_GGANTC','motif_GGCANT','motif_GGCNAT','motif_GGCNCA','motif_GGGACN','motif_GGNATC','motif_GGNCAT','motif_GNAATC','motif_GNACAT','motif_GNACCT','motif_GNACTT','motif_GNATCC','motif_GNATCT','motif_GNATTC','motif_GNCAAT','motif_GNCATC','motif_GNCATG','motif_GNCATT','motif_GNCTAG','motif_GNGAGC','motif_GNGCTA','motif_GNTACC','motif_GNTACT','motif_GNTCAT','motif_GTAANC','motif_GTACTN','motif_GTANCT','motif_GTCANC','motif_GTCANG','motif_GTCATN','motif_GTCNAG','motif_GTNACC','motif_GTNACT','motif_GTNATC','motif_GTNCAT','motif_GTNGAC','motif_GTTNAC','motif_TAACNG','motif_TAANGC','motif_TACANG','motif_TACTGN','motif_TAGCNG','motif_TAGGNC','motif_TAGNCT','motif_TAGNGC','motif_TAGNTC','motif_TAGTNC','motif_TANAGC','motif_TCAANG','motif_TCACNG','motif_TCAGNT','motif_TCCNGC','motif_TCNAGT','motif_TCNGAG','motif_TCNGGA','motif_TCTNAG','motif_TGAANC','motif_TGACNC','motif_TGACNG','motif_TGANAC','motif_TGANCT','motif_TGCNAG','motif_TGCTAN','motif_TGGAGN','motif_TGNACC','motif_TGNACT','motif_TGNCAC','motif_TGNCAT','motif_TGNCCA','motif_TGNCTA','motif_TGNGAC','motif_TGNTCA','motif_TGTANC','motif_TGTNAC','motif_TNAAGC','motif_TNAGCA','motif_TNAGCC','motif_TNAGGC','motif_TNATGC','motif_TNCAAG','motif_TNCACG','motif_TNCAGA','motif_TNCAGT','motif_TNCATG','motif_TNCGCA','motif_TNCTAG','motif_TNCTGA','motif_TNGACA','motif_TNGGAC','motif_TNGGCA','motif_TNTAGC','motif_TNTGCA','motif_TTACNG','motif_TTCANG','motif_TTCNGA','motif_TTGACN','motif_TTGCAN','motif_TTGNCA','motif_TTNAGC','motif_TTNCAG'];
var motifs = ['motif1_TCGNAG','motif2_GCTGGAGG','motif3_CGCTNA','motif4_TGTCTA','motif5_CAGTGT','motif6_AAGACT','motif7_CGNATC','motif8_CCATGN','motif9_ANGGCT','motif10_SCGGAGASN','motif11_GCGANT','motif12_ACTAAG','motif13_GAGGATGCK','motif14_TCNACG','motif15_ACTGTG','motif16_ACCAG','motif17_CGCTAN','motif18_CATCAG','motif19_GYTGGMC','motif20_TGNAGC','motif21_TCTTGA','motif22_GGMCTG','motif23_CGCNAT','motif24_AGAACT','motif25_GATCCN','motif26_CTCCGCAGTA','motif27_CCTGCA','motif28_CGTNCA','motif29_TAGCTCGGCT','motif30_AGNTCC','motif31_AGNCGT','motif32_TRGNMCTNNT','motif33_AGAGCATGAGACGG','motif34_GANCCT','motif35_CGCCYAGA','motif36_AAGGAGRAN','motif37_GCTCGCA','motif38_TCGNCA','motif39_CCAAGT','motif40_ATGCGGAGGAG','motif41_TSACAA','motif42_CGNTCA','motif43_CCCWGT','motif44_TGAAGST','motif45_GCTCNGG','motif46_CGNAGT','motif47_CGAGTN','motif48_CANTCG','motif49_ACAGRG','motif50_GTCCNA','motif51_CGGNTA','motif52_CGNATG','motif53_ANGCTG','motif54_CGNGTA','motif55_CGTTATAGCC','motif56_GANCGT','motif57_AGGCAT','motif58_CGGNAT','motif59_NCWCCARNR','motif60_GCGNAT','motif61_KAYMGMTN','motif62_CGNGAT','motif63_GTNCCA','motif64_AGTCGN','motif65_TNGCGA','motif66_ACCGRTCA','motif67_GNTAAC','motif68_CTTTTAAAC','motif69_RYKNAAATC','motif70_MAATCGC','motif71_CTCCGCW','motif72_CAGAAMC','motif73_GAGCKMGC','motif74_TTKAAAY','motif75_AGCCGAGCGCT','motif76_GGAGCAGCCAAT','motif77_TCCTTGG','motif78_NCGNWGCAWN','motif79_ACATCTACAA','motif80_CTCTGAGAGAA','motif81_NGCAGAA','motif82_TTGAATCGCGG','motif83_TTWTAAA','motif84_GGKTTYT','motif85_TWNNGCSNA','motif86_CGCACAGACCGCGC','motif87_RCGCACWS','motif88_CCCTCTTT','motif89_CGCCGTGTTTA','motif90_TTATATCGC','motif91_TTCTTTCG','motif92_GCGKWWNAA','motif93_TANTMTCTRWAT','motif94_CATYTSA','motif95_AGCGAGCTAGC','motif96_TKNTTCTGTCTN','motif97_TTCCCT','motif98_GCCGAAGATT','motif99_GYGTSANACG','motif100_GCYTNCTC','motif101_NAGCAASA','motif102_GCAAMGT','motif103_CGGCTAWWT','motif104_GTWSGMT','motif105_KTNGNAGWMG','motif106_KCGCANTC','motif107_CGTCTGCGTA','motif108_AACKSARM','motif109_TCNMTMGC','motif110_AGTCGCAGCG','motif111_WWAATYCGCTCC','motif112_CGYGYAWT','motif113_YGAGCTRTG','motif114_AAACCCGCTC','motif115_CATCAACTAC','motif116_CCAARA','motif117_SKSNGCGCTSN','motif118_AATCCGGCT','motif119_TCAAAANCG','motif120_TTSMTGNNGKTG','motif121_TGCAWTGTA','motif122_TACAAYGGM','motif123_TTGATGCAGTGA','motif124_AATNCANCACT','motif125_TTTAACTCGT','motif126_AATGCAGTCG','motif127_TTTTTACCCTC','motif128_NNGNATRCGWN','motif129_CTCGTAATCT','motif130_TTTCAAACNCCC','motif131_CTGCTTAAATA','motif132_TCRCCAGWY','motif133_TWTAWAGTWGRAG','motif134_ATAAGAGAGGC','motif135_TNKYTGCAKA','motif136_GTCTGCGTCTCT','motif137_MAACAGAAGY','motif138_CTTTWANNYCC','motif139_CGTTCGAATT','motif140_WTAAATAACG','motif141_TTAAACGGC','motif142_TCATATAGAGAAGC','motif143_ATGATGTG','motif144_AAKCMSGT','motif145_GMAGWCGMAW','motif146_AGACGAAGA','motif147_ATATCCAGTG','motif148_NTCSYSTYT','motif149_CAAGCTGTACA','motif150_AGCACAGGCG','motif151_GCCYGTGCMKCW','motif152_GCKYRMKCGS','motif153_ACTYNYYATYG','motif154_GRWGGCAARCG','motif155_AATARSTCCC','motif156_ACTGTAGGACMT','motif157_AAACTWACC','motif158_SRCGWYACA','motif159_ACACATACTACA','motif160_AGCCGGTAACG','motif161_CGGCTTGATT','motif162_AGTTACCGTCA','motif163_GARTCGCCCTGTNA','motif164_AGCCGATTTG','motif165_AAAGTTACTG','motif166_TAMAACTTTGS','motif167_TTGGGTAGGAG','motif168_TCTCAGAGTATAAA','motif169_GCCTGGCC'];
var pval = [</html>{{{tfbs_overrepresentation}}}<html>];
var pval = [</html>{{{tfbs_overrepresentation}}}<html>];
var data = [];
var data = [];
Line 191: Line 191:
<table id="tfbs_overexpression_table"></table>
<table id="tfbs_overexpression_table"></table>
</html>
</html>


== ENCODE TF ChIP-seq peak enrichment analysis ==
== ENCODE TF ChIP-seq peak enrichment analysis ==

Revision as of 12:10, 26 November 2012

Full id: {{{full_id}}}


Phase1 CAGE Peaks


Pathway enrichment analysis

Analyst: Emmanuel Dimont


GOStat results on Coexpression cluster

The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner

GO IDGO nameFDR corrected p-value
{{{gostat_on_coexpression_clusters}}}


Sample ontology enrichment analysis

The results for enrichment analysis on the data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. <br>Analyst: Hideya Kawaji

Cell Type
Ontology termp-valuen
[[{{{ontology_enrichment_celltype}}}|]]
Uber Anatomy
Ontology termp-valuen
[[{{{ontology_enrichment_uberon}}}|]]
Disease
Ontology termp-valuen
[[{{{ontology_enrichment_disease}}}|]]

TFBS overrepresentation

The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon

ENCODE TF ChIP-seq peak enrichment analysis

Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner

No analysis results for this cluster


Relative expression of the co-expression cluster

<br>Analyst:

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