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= Motifs =
= Top activities with MARA =
== Top activities with MARA ==
{{#if: {{{top_motifs}}} | {{#top_motifs_table01: {{{top_motifs}}}}}|}}
{{#if: {{{top_motifs}}} | {{#top_motifs_table01: {{{top_motifs}}}}}|}}
== De-novo motifs ==
= Specific genes =


= Facet (from FONSE) =
= Facet (from FONSE) =

Revision as of 18:37, 29 February 2012

{{{name}}}

Transcriptome
Genomic view zenbu , UCSC
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
species {{{sample_species}}}
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}

Top activities with MARA

{{#top_motifs_table01: {{{top_motifs}}}}}

Facet (from FONSE)

Cell_lineage
CL:
Disease
DOID:
Anatomy
UBERON: