Personal tools

Template:F5samples: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
Line 121: Line 121:
= Top activities with MARA =
= Top activities with MARA =
{{#if: {{{top_motifs}}} |
{{#if: {{{top_motifs}}} |
{| class="wikitable mw-collapsible mw-collapsed" style="width:60%"
{{#top_motifs_table01: {{{top_motifs}}}}}
! Top activities with MARA
|-
{{#top_motifs_table01: {{{top_motifs}}}}}
|}
}}
}}



Revision as of 14:37, 19 March 2012

{{{name}}}

Transcriptome
Genomic view zenbu , UCSC
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
species {{{sample_species}}}
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}

Top activities with MARA

{{#top_motifs_table01: {{{top_motifs}}}}}

Facet (from FONSE)

Cell_lineage
CL:
Disease
DOID:
Anatomy
UBERON: