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[[name::{{{name}}}]]{{#set:id={{{id}}}}}
{{#set:id={{{id}}}}}
<table>
<tr><th scope="row" align="right">Name:</th><td>[[namel::{{{name}}}]]</td></tr>
<tr><th scope="row" align="right">Genomic View:</th><td>[https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Experiments;search={{#replace:{{{id}}}|FF:|}} zenbu] , [https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?db={{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | hg19 | }}{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | mm9 | }}{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) |  rn4 | }}{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | canFam2 | }}{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | galGal3 | }}&tsCurTab=advancedTab&hgt_tsPage=&hgt_tSearch=search&tsName={{#replace:{{{id}}}|FF:|}} UCSC] </td></tr>
<tr><th scope="row" align="right">Species:</th><td>[[sample_species::{{{sample_species}}}]]</td></tr>
</table>
 
 
 
{{#if: {{#pos:{{{expression_enrichment_score}}}|chr}} |
{{#enrichscoretable_hg19:{{{expression_enrichment_score}}}}}
}}
 
{{#if: {{{top_motifs}}} |
<table class="wikitable mw-collapsible" style="width:40%">
<tr><th>Top activities with MARA</th></tr><tr><td>
<div style="height:300px; overflow:auto;">
{{#top_motifs_table01: {{{top_motifs}}}}}
</div>
</td></tr></table>
}}
 


{|style="background-color: #F5F5F5; width:25em; float: right;"  
{|style="background-color: #F5F5F5; width:25em; float: right;"  
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| [[rna_concentration::{{{rna_concentration}}}]]
| [[rna_concentration::{{{rna_concentration}}}]]
|}
|}
{{#if: {{#pos:{{{expression_enrichment_score}}}|chr}} |
{{#enrichscoretable_hg19:{{{expression_enrichment_score}}}}}
}}
{{#if: {{{top_motifs}}} |
<table class="wikitable mw-collapsible" style="width:40%">
<tr><th>Top activities with MARA</th></tr><tr><td>
<div style="height:300px; overflow:auto;">
{{#top_motifs_table01: {{{top_motifs}}}}}
</div>
</td></tr></table>
}}


= Facet (from FONSE) =
= Facet (from FONSE) =

Revision as of 23:59, 3 April 2012

Name:{{{name}}}
Genomic View:zenbu , UCSC
Species:{{{sample_species}}}



Top activities with MARA

{{#top_motifs_table01: {{{top_motifs}}}}}


Transcriptome
Genomic view zenbu , UCSC
hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}
sample detail
species {{{sample_species}}}
strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition {{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}
RNA info
sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration {{{rna_concentration}}}

Facet (from FONSE)

Cell_lineage
CL:
Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID:
Anatomy
UBERON: