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Difference between revisions of "Template:FFCP" - resource_browser
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Difference between revisions of "Template:FFCP"

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<tr><th scope="row" align="right">DPIdataset:</th><td> {{#switch:{{{DPIdataset}}} |robustDPI=robustDPI|permissiveDPI=permissiveDPI|#default = NA}}</td></tr>
 
<tr><th scope="row" align="right">DPIdataset:</th><td> {{#switch:{{{DPIdataset}}} |robustDPI=robustDPI|permissiveDPI=permissiveDPI|#default = NA}}</td></tr>
 
<tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr>
 
<tr><th scope="row" align="right">TSS-like-by-RIKEN-classifier(Yes/No):</th><td> {{#switch: {{{TSSclassifier}}} | S = Yes| #default = NA| W= No|N=No}} </td></tr>
<tr><th scope="row" align="right">GencodeV16b_All_Build2_RSEM10_CPAT_consensus:</th><td>  
+
<tr><th scope="row" align="right">GencodeV16b-All-Build2-RSEM10-CPAT_consensus:</th><td>  
 
{{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr>
 
{{#switch: {{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}} | no_gencodeV16_or_build2_transcript = no_gencodeV16_or_build2_transcript| #default = NA|novel_noncoding=novel_noncoding|novel_coding=novel_coding|gencodeV16_ncRNA=gencodeV16_ncRNA|gencodeV16_protein_coding=gencodeV16_protein_coding}}</td></tr>
 +
<tr><th scope="row" align="right">DHS-support(Yes/No):</th><td> {{#switch: {{{DHSsupport}}}|supported= Yes|not_supported=No|#default=NA}} </td></tr>
 
<tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{{EntrezGene}}}  {{{EntrezGene}}}] }}}}|NA}}</td></tr>
 
<tr><th scope="row" align="right">EntrezGene:</th><td>{{#if:{{{EntrezGene}}}|{{#ifeq:{{#show:{{FULLPAGENAME}}|?EntrezGene}}|NA|NA|{{#ifexist:EntrezGene:{{{EntrezGene}}}|[[EntrezGene:{{{EntrezGene}}}|{{#show:EntrezGene:{{{EntrezGene}}}|?Symbol}}]]|[http://www.ncbi.nlm.nih.gov/gene?term={{{EntrezGene}}}  {{{EntrezGene}}}] }}}}|NA}}</td></tr>
 
<tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr>
 
<tr><th scope="row" align="right">Description:</th><td> {{#show:{{FULLPAGENAME}}|?description}}</td></tr>
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}}
 
}}
 
<div style="clear:both;"></div>
 
<div style="clear:both;"></div>
 
 
  
 
<!--
 
<!--
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|<html>
 
|<html>
 
|}}
 
|}}
 
 
 
-->
 
-->
 
  
 
{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}}
 
{{#arraymap:{{{short_description}}}|,|$|{{#set:short_description=$}}}}
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{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
 
{{#set:genomic_location_end={{#explode:{{#explode:{{PAGENAME}}|..|-1}}|,|0}}}}
 
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
 
{{#set:strand={{#explode:{{PAGENAME}}|,|-1}}}}
 +
{{#set:dpi_dataset={{{DPIdataset}}}}}
 +
{{#set:TSS_like_by_RIKEN_classifier={{{TSSclassifier}}}}}
 +
{{#set:GencodeV16b_All_Build2_RSEM10_CPAT_consensus={{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}}}
 +
{{#set:DHS_support={{{DHSsupport}}}}}
 +
  
 
[[Category:FFCP]]
 
[[Category:FFCP]]

Revision as of 02:15, 10 January 2014


Short description:
DPIdataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
GencodeV16b-All-Build2-RSEM10-CPAT_consensus: NA
DHS-support(Yes/No): NA
EntrezGene:{{{EntrezGene}}}
Description:
Species:
Association with transcript:
HGNC: NA
UniProt:
Coexpression cluster:

View on UCSC genome browser OSC local mirror

Mouse over to see Genome browser image, Click image to go to Genome browser

CAGE Expression

Sample

{{{short_description}}}

0.00



  • Click each plot point to find sample in table

Ontology-based sample term enrichment analysis

Cell type
Ontology termp-valuen
[[{{{ontology_enrichment_celltype_v019_2}}}|]]
Uber anatomy
Ontology termp-valuen
[[{{{ontology_enrichment_uberon_v019_2}}}|]]
Disease
Ontology termp-valuen
[[{{{ontology_enrichment_disease_v019_2}}}|]]







"FFCP" is not a number.

Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "GencodeV16b All Build2 RSEM10 CPAT consensus" (as page type) with input value "{{{GencodeV16b_All_Build2_RSEM10_CPAT_consensus}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.