Template:MCL coexpression mm9: Difference between revisions
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== TFBS overrepresentation == | == TFBS overrepresentation == | ||
{{#info:The values shown are the p-values for | {{#info:The values shown are the p-values for over-representation of the motif in this co-expression cluster. So a small p-value means a strong over-representation. <br>Analyst: Michiel de Hoon}} | ||
<html> | <html> | ||
<script type="text/javascript"> | <script type="text/javascript"> | ||
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} | } | ||
tfbs_overexpression_novel_table_obj= $('#tfbs_overexpression_table').dataTable({ | var tfbs_overexpression_novel_table_obj= $('#tfbs_overexpression_table').dataTable({ | ||
"sScrollY": "300px", | "sScrollY": "300px", | ||
"bScrollCollapse": true, | "bScrollCollapse": true, | ||
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"aaSorting": [[ 1, "desc" ]], | "aaSorting": [[ 1, "desc" ]], | ||
}); | }); | ||
var tfbs_overexpression_novel_table_objtool = new TableTools( tfbs_overexpression_novel_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]}); | |||
$('# tfbs_overexpression_novel_table_button').before( tfbs_overexpression_novel_table_objtool.dom.container ); | $('# tfbs_overexpression_novel_table_button').before( tfbs_overexpression_novel_table_objtool.dom.container ); | ||
var tfbs_overexpression_jaspar_table_obj=$('#tfbs_overexpression_jaspar').dataTable({ | |||
"sScrollY": "300px", | "sScrollY": "300px", | ||
"bScrollCollapse": true, | "bScrollCollapse": true, | ||
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"aaSorting": [[ 1, "desc" ]], | "aaSorting": [[ 1, "desc" ]], | ||
}); | }); | ||
tfbs_overexpression_jaspar_table_objtool = new TableTools( tfbs_overexpression_jaspar_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]}); | var tfbs_overexpression_jaspar_table_objtool = new TableTools( tfbs_overexpression_jaspar_table_obj, {"sSwfPath": "/resource_browser/rb_js/datatables/extras/TableTools/media/swf/copy_csv_xls_pdf.swf", "aButtons": [ {"sExtends": "copy", "mColumns": "visible"},{"sExtends": "csv", "mColumns": "visible"}, {"sExtends": "pdf", "mColumns": "visible"} ]}); | ||
$('#tfbs_overexpression_jaspar_table_button').before(tfbs_overexpression_jaspar_table_objtool.dom.container ); | $('#tfbs_overexpression_jaspar_table_button').before(tfbs_overexpression_jaspar_table_objtool.dom.container ); | ||
Revision as of 10:54, 5 November 2013
Phase1 CAGE Peaks
GOStat results on Coexpression cluster
The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| {{{gostat_on_MCL_coexpression}}} |
Relative expression of the co-expression cluster -Median-
<br>Analyst:
"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.
Ontology enrichment
<br>Analyst:
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease}}}|]] |
TFBS overrepresentation
The values shown are the p-values for over-representation of the motif in this co-expression cluster. So a small p-value means a strong over-representation. <br>Analyst: Michiel de Hoon
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
