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{{#set:id={{{id}}}}}
{{Loading|loadingimage=sprites.gif}}{{#ask:[[Category:Novel_motif]]|mainlabel=Novel motif ID|?Logo|?name=name|format=ttable|class=novel_motif_list stripe cell-border order-column compact|limit=1100}}<html>
<table>
<style type="text/css" title="currentStyle">
<tr><th scope="row" align="right">Name:</th><td>[[name::{{{name}}}]]</td></tr>
@import "/5/sstar/rb_js/html5button/datatables.css";
<tr><th scope="row" align="right">[[Property:Sample_species|Species]]:</th><td>[[sample_species::{{{sample_species}}}]]</td></tr>
@import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
<tr><th scope="row" align="right">Genomic View:</th><td>[https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Experiments;search={{#replace:{{{id}}}|FF:|}} zenbu] , [https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?db={{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | hg19 | }}{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | mm9 | }}{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) |  rn4 | }}{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | canFam2 | }}{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | galGal3 | }}&tsCurTab=advancedTab&hgt_tsPage=&hgt_tSearch=search&tsName={{#replace:{{{id}}}|FF:|}} UCSC] </td></tr>
.bgwhite { background-color: white};
</table>
</style>
 
<script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script>
<html>
<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script>
<style type="text/css" title="currentStyle">
<script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
@import "/resource_browser/rb_js/datatables/media/css/f5_rb_table.css";
<script type="text/javascript">
</style>
$(document).ready(function() {
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
    $('.novel_motif_list').DataTable({
 
        dom: 'Blfrtip',
</html>
        lengthMenu: [[25, 50, -1], [25, 50, "All"]],
 
processing: true,
{{#if: {{#pos:{{{expression_enrichment_score}}}|chr}} |
scrollCollapse: true,
<html>
autoWidth: false,
<br>
        buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'],
<!-- tf enrich table: start-->
        columnDefs: [
<script type="text/javascript" charset="utf-8">
{ targets: [0], type: "html-num"},
var ffcp_tf_enrichscore_d=
{ targets: [1], width: "50px", className: "bgwhite"},
[
{ targets: [2], width: "50px"}
</html>
{{#exp_enrichscore_dtarr:{{{expression_enrichment_score}}}|FFCP_PHASE1:{{#switch: {{{sample_species}}} | Human (Homo sapiens) = Hg19 | Mouse (Mus musculus) = Mm9 }}::}}
<html>
];
 
$(document).ready(function() {
$('#ffcp_tf_enrichscore').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="ffcp_tf_enrichscore_cont"></table>' );
$('#ffcp_tf_enrichscore_cont').dataTable( {
"sDom": '<"toolbar">frtip',
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaData": ffcp_tf_enrichscore_d,
"aoColumns": [
{ "sTitle": "FFCP Phase1","sWidth": "30px",
"fnRender": function(obj) {
var id = obj.aData[ obj.iDataColumn ].split("!");
return sReturn = "<a href=\"/resource_browser/"+encodeURI(id[0])+"\">"+id[1]+"</a>";
}
},
{ "sTitle": "Enrichment Score","sWidth": "30px"},
{ "sTitle": "TPM","sWidth": "30px"},
{ "sTitle": "TF","sWidth": "30px"}
 
],
],
"aaSorting": [[ 1, "desc" ]]
        columns: [
} );
{ title: "Novel motif ID" },
$("div.toolbar").html('<b>TF expression and enrichment</b>');
            { title: "Logo" ,
$("div.toolbar").css('border-width', '0 0 2px 0');
              render: function ( data, type, row, meta ) {
$("div.toolbar").css('border-color', '#6495ED');
return "<img src=\"/5/sstar/seqlogos/novel/" +  $(row[0]).text() + ".png\" style=\"width:80px;height:20px;border:1px solid lightgrey\">";
$("div.toolbar").css('border-style', 'solid');
              },
} );
            },
</script>
    { title: "Name" }
<!-- tf enrich table: end-->
        ]
</html>
});
}}
 
{{#if: {{#pos:{{{top_motifs}}}|;}} |
<html>
<!-- top motif table: start-->
<script type="text/javascript" charset="utf-8">
var top_motif_d=
[
</html>
{{#top_motifs_dtarr:{{{top_motifs}}}}}
<html>
];


$(document).ready(function() {
$('.dataTables_scrollBody').css("resize", "vertical");
$('#top_motiftb').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="top_motiftb_cont"></table>' );
$('#top_motiftb_cont').dataTable( {
"sDom": '<"top_motif_toolbar">frtip',
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaData": top_motif_d,
"aoColumns": [
{ "sTitle": "Motifs","sWidth": "30px",
"fnRender": function(obj) {
var id = obj.aData[ obj.iDataColumn ].split("!");
return sReturn = "<a href=\"/resource_browser/"+id[0]+"\">"+id[1]+"</a>";
}
},
{ "sTitle": "Z-score", "sType": "numeric", "sWidth": "30px"},


],
});
"aaSorting": [[ 1, "desc" ]]
</script>
} );
$("div.top_motif_toolbar").html('<b>Top motif activities with MARA</b>');
$("div.top_motif_toolbar").css('border-width', '0 0 2px 0');
$("div.top_motif_toolbar").css('border-color', '#6495ED');
$("div.top_motif_toolbar").css('border-style', 'solid');
$("#top_motiftb thead th").css('line-height', '34px');
} );
</script>
<!-- top motif table: end-->
</html>
</html>
}}
<html>
<div id="ffcp_tf_enrichscore" style="float:left;"></div>
<div id="top_motiftb" style="float:left;padding-left:15px;"></div>
<div style="clear:both;"></div>
<br><br>
<div style="height:320px; overflow-y:scroll; resize:both;">
<H3>Homer <i>de novo</i> Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged</H3>
<i>P</i>-value threshold: 1e-15<BR/>
Matrix similarity threshold: 0.75<BR/>
Information content threshold: 1.5<BR/>
Minimum target frequency: 50<BR/>
Minimum background percentage: -1<BR/>
Total target sequences = 5327<BR/>
Total background sequences = 43180<BR/>
<TABLE border="1" cellpading="0" cellspacing="0">
<TR><TD><div align="center"><b>Rank</b><div></TD><TD><b><div align="center"><b>Motif</b><div></TD><TD><div align="center"><b>Enrichment<br>and <i>P</i>-value<br>(ln(<i>P</i>-value))</b><b></TD><TD><div align="center"><b>Best Match/Details<br> and Motif File</b></div></TD></TR>
<TR><TD>1
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.logo.png"/><TD>9.14% Targets<br>1.14% Backgr.<br><i>P</i> &lt; 1e-264<br>(-6.092e+02)</TD><TD>JUN.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>2
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.logo.png"/><TD>11.38% Targets<br>2.45% Backgr.<br><i>P</i> &lt; 1e-209<br>(-4.824e+02)</TD><TD>SOX10_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>3
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.logo.png"/><TD>7.12% Targets<br>1.28% Backgr.<br><i>P</i> &lt; 1e-153<br>(-3.526e+02)</TD><TD>RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>4
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.logo.png"/><TD>14.68% Targets<br>5.34% Backgr.<br><i>P</i> &lt; 1e-140<br>(-3.229e+02)</TD><TD>CREB1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>5
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.logo.png"/><TD>60.12% Targets<br>44.92% Backgr.<br><i>P</i> &lt; 1e-109<br>(-2.510e+02)</TD><TD>NFYA_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>6
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.logo.png"/><TD>14.49% Targets<br>6.31% Backgr.<br><i>P</i> &lt; 1e-99<br>(-2.296e+02)</TD><TD>BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>7
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.logo.png"/><TD>26.46% Targets<br>15.18% Backgr.<br><i>P</i> &lt; 1e-98<br>(-2.277e+02)</TD><TD>E4F1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>8
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.logo.png"/><TD>15.02% Targets<br>7.77% Backgr.<br><i>P</i> &lt; 1e-69<br>(-1.602e+02)</TD><TD>RFX1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>9
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.logo.png"/><TD>25.03% Targets<br>15.74% Backgr.<br><i>P</i> &lt; 1e-67<br>(-1.553e+02)</TD><TD>SP1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>10
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.logo.png"/><TD>5.73% Targets<br>2.01% Backgr.<br><i>P</i> &lt; 1e-55<br>(-1.284e+02)</TD><TD>ATF1_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>11
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.logo.png"/><TD>5.88% Targets<br>2.10% Backgr.<br><i>P</i> &lt; 1e-55<br>(-1.280e+02)</TD><TD>NFYB_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>12
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.logo.png"/><TD>11.43% Targets<br>5.88% Backgr.<br><i>P</i> &lt; 1e-52<br>(-1.214e+02)</TD><TD>NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>13
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.logo.png"/><TD>14.31% Targets<br>8.32% Backgr.<br><i>P</i> &lt; 1e-47<br>(-1.083e+02)</TD><TD>ATF5_CREB3.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>14
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.logo.png"/><TD>4.98% Targets<br>1.78% Backgr.<br><i>P</i> &lt; 1e-46<br>(-1.081e+02)</TD><TD>RFX2_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>15
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.logo.png"/><TD>65.83% Targets<br>56.15% Backgr.<br><i>P</i> &lt; 1e-46<br>(-1.070e+02)</TD><TD>MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>16
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.logo.png"/><TD>5.01% Targets<br>1.87% Backgr.<br><i>P</i> &lt; 1e-44<br>(-1.018e+02)</TD><TD>Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>17
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.logo.png"/><TD>45.42% Targets<br>36.08% Backgr.<br><i>P</i> &lt; 1e-43<br>(-1.010e+02)</TD><TD>ATF3_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>18
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.logo.png"/><TD>3.57% Targets<br>1.10% Backgr.<br><i>P</i> &lt; 1e-41<br>(-9.658e+01)</TD><TD>ATF2.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>19
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.logo.png"/><TD>42.47% Targets<br>33.66% Backgr.<br><i>P</i> &lt; 1e-40<br>(-9.269e+01)</TD><TD>PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>20
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.logo.png"/><TD>13.91% Targets<br>8.44% Backgr.<br><i>P</i> &lt; 1e-39<br>(-9.111e+01)</TD><TD>ELK1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>21
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.logo.png"/><TD>8.04% Targets<br>4.06% Backgr.<br><i>P</i> &lt; 1e-38<br>(-8.841e+01)</TD><TD>MYB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>22
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.logo.png"/><TD>43.56% Targets<br>35.32% Backgr.<br><i>P</i> &lt; 1e-34<br>(-8.012e+01)</TD><TD>E2F5_do_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>23
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.logo.png"/><TD>51.05% Targets<br>42.61% Backgr.<br><i>P</i> &lt; 1e-34<br>(-8.003e+01)</TD><TD>CDX1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>24
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.logo.png"/><TD>29.05% Targets<br>22.01% Backgr.<br><i>P</i> &lt; 1e-32<br>(-7.498e+01)</TD><TD>ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>25
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.logo.png"/><TD>4.41% Targets<br>1.84% Backgr.<br><i>P</i> &lt; 1e-31<br>(-7.364e+01)</TD><TD>BATF_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>26
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.logo.png"/><TD>9.31% Targets<br>5.37% Backgr.<br><i>P</i> &lt; 1e-30<br>(-7.093e+01)</TD><TD>MAFG_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>27
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.logo.png"/><TD>24.69% Targets<br>18.41% Backgr.<br><i>P</i> &lt; 1e-29<br>(-6.805e+01)</TD><TD>HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>28
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.logo.png"/><TD>25.03% Targets<br>18.78% Backgr.<br><i>P</i> &lt; 1e-28<br>(-6.643e+01)</TD><TD>BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>29
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.logo.png"/><TD>18.64% Targets<br>13.45% Backgr.<br><i>P</i> &lt; 1e-25<br>(-5.925e+01)</TD><TD>ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>30
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.logo.png"/><TD>25.25% Targets<br>19.53% Backgr.<br><i>P</i> &lt; 1e-23<br>(-5.516e+01)</TD><TD>E2F(E2F)/Cell-Cycle-Exp/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>31
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.logo.png"/><TD>22.64% Targets<br>17.33% Backgr.<br><i>P</i> &lt; 1e-22<br>(-5.185e+01)</TD><TD>MYB_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>32
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.logo.png"/><TD>48.33% Targets<br>41.62% Backgr.<br><i>P</i> &lt; 1e-22<br>(-5.177e+01)</TD><TD>SPIB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>33
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.logo.png"/><TD>5.91% Targets<br>3.25% Backgr.<br><i>P</i> &lt; 1e-22<br>(-5.162e+01)</TD><TD>MYB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>34
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.logo.png"/><TD>1.69% Targets<br>0.49% Backgr.<br><i>P</i> &lt; 1e-22<br>(-5.087e+01)</TD><TD>HSF2_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>35
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.logo.png"/><TD>87.66% Targets<br>82.97% Backgr.<br><i>P</i> &lt; 1e-20<br>(-4.812e+01)</TD><TD>Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>36
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.logo.png"/><TD>12.20% Targets<br>8.41% Backgr.<br><i>P</i> &lt; 1e-20<br>(-4.724e+01)</TD><TD>NRF1.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>37
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.logo.png"/><TD>49.36% Targets<br>42.96% Backgr.<br><i>P</i> &lt; 1e-20<br>(-4.723e+01)</TD><TD>TGIF1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>38
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.logo.png"/><TD>1.88% Targets<br>0.62% Backgr.<br><i>P</i> &lt; 1e-20<br>(-4.671e+01)</TD><TD>CREB1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>39
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.logo.png"/><TD>3.76% Targets<br>1.81% Backgr.<br><i>P</i> &lt; 1e-20<br>(-4.632e+01)</TD><TD>ETS:E-box/HPC7-Scl-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>40
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.logo.png"/><TD>13.67% Targets<br>9.71% Backgr.<br><i>P</i> &lt; 1e-19<br>(-4.582e+01)</TD><TD>PRGR_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>41
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.logo.png"/><TD>9.01% Targets<br>5.88% Backgr.<br><i>P</i> &lt; 1e-19<br>(-4.403e+01)</TD><TD>ZBT7B_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>42
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.logo.png"/><TD>50.54% Targets<br>44.43% Backgr.<br><i>P</i> &lt; 1e-18<br>(-4.313e+01)</TD><TD>TBP.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>43
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.logo.png"/><TD>3.32% Targets<br>1.60% Backgr.<br><i>P</i> &lt; 1e-18<br>(-4.160e+01)</TD><TD>ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>44
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.logo.png"/><TD>59.59% Targets<br>53.74% Backgr.<br><i>P</i> &lt; 1e-17<br>(-4.004e+01)</TD><TD>ISL1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>45
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.logo.png"/><TD>5.43% Targets<br>3.16% Backgr.<br><i>P</i> &lt; 1e-17<br>(-3.975e+01)</TD><TD>SRBP2_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.motif">Motif File (PWM)</A></TD></TR>
<TR><TD>46
</TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.logo.png"/><TD>2.97% Targets<br>1.41% Backgr.<br><i>P</i> &lt; 1e-16<br>(-3.816e+01)</TD><TD>NFY{A,B,C}.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.motif">Motif File (PWM)</A></TD></TR>
</TABLE>
</div>
</html>
== Details ==
=== Transcriptome profiling ===
<table>
<tr><th scope="row" align="right"> [[Property:profile_hcage|hCAGE]] </th> <td> [[profile_hcage::{{{profile_hcage}}}]]</td>
<tr><th scope="row" align="right"> [[Property:profile_rnaseq|RNA-seq]] </th><td> [[profile_rnaseq::{{{profile_rnaseq}}}]]</td>
<tr><th scope="row" align="right"> [[Property:profile_srnaseq|smallRNA seq]] </th><td> [[profile_srnaseq::{{{profile_srnaseq}}}]]</td>
<tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]</th><td> [[profile_cagescan::{{{profile_cagescan}}}]]
</table>
=== Sample info ===
<table>
<tr><th scope="row" align="right"> [[Property:sample_strain|strain]] </th><td> [[sample_strain::{{{sample_strain}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_tissue|tissue]]</th><td> [[sample_tissue::{{{sample_tissue}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_dev_stage|dev_stage]] </th><td> [[sample_dev_stage::{{{sample_dev_stage}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_sex|sex]]</th><td> [[sample_sex::{{{sample_sex}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_age|age]]</th><td> [[sample_age::{{{sample_age}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_ethnicity|ethnicity]]</th><td> [[sample_ethnicity::{{{sample_ethnicity}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_cell_type|cell_type]]</th><td> [[sample_cell_type::{{{sample_cell_type}}}]] </td>
<tr><th scope="row" align="right"> [[Property:sample_cell_line|cell_line]]</th><td> [[sample_cell_line::{{{sample_cell_line}}}]] </td>
<tr><th scope="row" align="right"> [[Property:sample_collaboration|collaboration]]</th><td> [[sample_collaboration::{{{sample_collaboration}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_experimental_condition|Experimental condition]]</th><td>[[sample_experimental_condition::{{{sample_experimental_condition}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_disease|disease]]</th><td> [[sample_disease::{{{sample_disease}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_cell_lot|cell_lot]]</th><td> [[sample_cell_lot::{{{sample_cell_lot}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_cell_catalog|cell_catalog]]</th><td> [[sample_cell_catalog::{{{sample_cell_catalog}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_company|company]]</th><td> [[sample_company::{{{sample_company}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_donor(cell lot)|donor(cell lot)]]</th><td> [[sample_donor(cell lot)::{{{sample_donor(cell lot)}}}]]</td>
<tr><th scope="row" align="right"> [[Property:sample_note|Note]]</th><td> [[sample_note::{{{sample_note}}}]]</td>
</table>
=== RNA info ===
<table>
<tr><th scope="row" align="right"> [[Property:sample_id|sample_id]] </th><td>[[sample_id::{{{sample_id}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_tube_id|tube_id]]</th><td> [[rna_tube_id::{{{rna_tube_id}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_box|box]]</th><td> [[rna_box::{{{rna_box}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_position|position]]</th><td> [[rna_position::{{{rna_position}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_lot_number|lot_number]]</th><td> [[rna_lot_number::{{{rna_lot_number}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_catalog_number|catalog_number]]</th><td> [[rna_catalog_number::{{{rna_catalog_number}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_rin|RIN]]</th><td> [[rna_rin::{{{rna_rin}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_od260/230|OD260/230]]</th><td> [[rna_od260/230::{{{rna_od260/230}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_od260/280|OD260/280]]</th><td> [[rna_od260/280::{{{rna_od260/280}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_sample_type|sample_type]]</th><td> [[rna_sample_type::{{{rna_sample_type}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_extraction_protocol|extraction_protocol]]</th><td> [[rna_extraction_protocol::{{{rna_extraction_protocol}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_weight_ug|weight_ug]]</th><td> [[rna_weight_ug::{{{rna_weight_ug}}}]]</td>
<tr><th scope="row" align="right"> [[Property:rna_concentration|concentration]]</th><td>[[rna_concentration::{{{rna_concentration}}}]]</td>
</table>
== Parent ontology==
{{#if: {{{is_a}}} |
<div style="width:25%; float:left;">
'''is_a relathionship'''<br>{{#arraymap:{{{is_a}}}|;;|$|
{{#set:is_a=$}}{{#ifexist:$|[[$|$  {{#show:$|?name}}]]|$}}|<br>}}
</div>
|}}
{{#if: {{{part_of}}} |
<div style="width:25%; float:left;">
'''part_of relathionship'''<br>{{#arraymap:{{{part_of}}}|;;|$|
{{#set:part_of=$}}{{#ifexist:$|[[$|$  {{#show:$|?name}}]]|$}}|<br>}}
</div>
|}}
{{#if: {{{has_quality}}} |
<div style="width:25%; float:left;">
'''has_quality relathionship'''<br>{{#arraymap:{{{has_quality}}}|;;|$|
{{#set:has_quality=$}}{{#ifexist:$|[[$|$  {{#show:$|?name}}]]|$}}|<br>}}
</div>
|}}
<div style="clear:both;"></div>
== Ancestors in FF ontology ==
<!--
{{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|
{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|
{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
{{#if: {{{ancestors_in_anatomy_facet}}} |<br>'''Anatomy'''<br>{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|
{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
-->
<table>
<tr><th align="left">Anatomy</th><th align="left">Cell type</th> <th align="left">Disease</th>
<tr>
<td align="left" valign="top">
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</td>
<td align="left" valign="top">
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</td>
<td align="left" valign="top">
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</td>
<!-- turn off for now
<div>
{{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | http://upload.wikimedia.org/wikipedia/commons/thumb/1/11/Uomo_Vitruviano.jpg/86px-Uomo_Vitruviano.jpg | }}
{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | http://genome.ucsc.edu/images/Mus_musculus.jpg | }}
{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) |  http://genome.ucsc.edu/images/Rattus_norvegicus.jpg | }}
{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | http://genome.ucsc.edu/images/Canis_familiaris.jpg | }}
{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | http://genome.ucsc.edu/images/Gallus_gallus.jpg | }}
</div>
-->
[[Category:FF_Ontology]]
[[Category:FF_Samples]]

Revision as of 11:05, 17 January 2020

Novel motif IDname
1motif1_TCGNAG
10motif10_SCGGAGASN
100motif100_GCYTNCTC
101motif101_NAGCAASA
102motif102_GCAAMGT
103motif103_CGGCTAWWT
104motif104_GTWSGMT
105motif105_KTNGNAGWMG
106motif106_KCGCANTC
107motif107_CGTCTGCGTA
108motif108_AACKSARM
109motif109_TCNMTMGC
11motif11_GCGANT
110motif110_AGTCGCAGCG
111motif111_WWAATYCGCTCC
112motif112_CGYGYAWT
113motif113_YGAGCTRTG
114motif114_AAACCCGCTC
115motif115_CATCAACTAC
116motif116_CCAARA
117motif117_SKSNGCGCTSN
118motif118_AATCCGGCT
119motif119_TCAAAANCG
12motif12_ACTAAG
120motif120_TTSMTGNNGKTG
121motif121_TGCAWTGTA
122motif122_TACAAYGGM
123motif123_TTGATGCAGTGA
124motif124_AATNCANCACT
125motif125_TTTAACTCGT
126motif126_AATGCAGTCG
127motif127_TTTTTACCCTC
128motif128_NNGNATRCGWN
129motif129_CTCGTAATCT
13motif13_GAGGATGCK
130motif130_TTTCAAACNCCC
131motif131_CTGCTTAAATA
132motif132_TCRCCAGWY
133motif133_TWTAWAGTWGRAG
134motif134_ATAAGAGAGGC
135motif135_TNKYTGCAKA
136motif136_GTCTGCGTCTCT
137motif137_MAACAGAAGY
138motif138_CTTTWANNYCC
139motif139_CGTTCGAATT
14motif14_TCNACG
140motif140_WTAAATAACG
141motif141_TTAAACGGC
142motif142_TCATATAGAGAAGC
143motif143_ATGATGTG
144motif144_AAKCMSGT
145motif145_GMAGWCGMAW
146motif146_AGACGAAGA
147motif147_ATATCCAGTG
148motif148_NTCSYSTYT
149motif149_CAAGCTGTACA
15motif15_ACTGTG
150motif150_AGCACAGGCG
151motif151_GCCYGTGCMKCW
152motif152_GCKYRMKCGS
153motif153_ACTYNYYATYG
154motif154_GRWGGCAARCG
155motif155_AATARSTCCC
156motif156_ACTGTAGGACMT
157motif157_AAACTWACC
158motif158_SRCGWYACA
159motif159_ACACATACTACA
16motif16_ACCAG
160motif160_AGCCGGTAACG
161motif161_CGGCTTGATT
162motif162_AGTTACCGTCA
163motif163_GARTCGCCCTGTNA
164motif164_AGCCGATTTG
165motif165_AAAGTTACTG
166motif166_TAMAACTTTGS
167motif167_TTGGGTAGGAG
168motif168_TCTCAGAGTATAAA
169motif169_GCCTGGCC
17motif17_CGCTAN
18motif18_CATCAG
19motif19_GYTGGMC
2motif2_GCTGGAGG
20motif20_TGNAGC
21motif21_TCTTGA
22motif22_GGMCTG
23motif23_CGCNAT
24motif24_AGAACT
25motif25_GATCCN
26motif26_CTCCGCAGTA
27motif27_CCTGCA
28motif28_CGTNCA
29motif29_TAGCTCGGCT
3motif3_CGCTNA
30motif30_AGNTCC
31motif31_AGNCGT
32motif32_TRGNMCTNNT
33motif33_AGAGCATGAGACGG
34motif34_GANCCT
35motif35_CGCCYAGA
36motif36_AAGGAGRAN
37motif37_GCTCGCA
38motif38_TCGNCA
39motif39_CCAAGT
4motif4_TGTCTA
40motif40_ATGCGGAGGAG
41motif41_TSACAA
42motif42_CGNTCA
43motif43_CCCWGT
44motif44_TGAAGST
45motif45_GCTCNGG
46motif46_CGNAGT
47motif47_CGAGTN
48motif48_CANTCG
49motif49_ACAGRG
5motif5_CAGTGT
50motif50_GTCCNA
51motif51_CGGNTA
52motif52_CGNATG
53motif53_ANGCTG
54motif54_CGNGTA
55motif55_CGTTATAGCC
56motif56_GANCGT
57motif57_AGGCAT
58motif58_CGGNAT
59motif59_NCWCCARNR
6motif6_AAGACT
60motif60_GCGNAT
61motif61_KAYMGMTN
62motif62_CGNGAT
63motif63_GTNCCA
64motif64_AGTCGN
65motif65_TNGCGA
66motif66_ACCGRTCA
67motif67_GNTAAC
68motif68_CTTTTAAAC
69motif69_RYKNAAATC
7motif7_CGNATC
70motif70_MAATCGC
71motif71_CTCCGCW
72motif72_CAGAAMC
73motif73_GAGCKMGC
74motif74_TTKAAAY
75motif75_AGCCGAGCGCT
76motif76_GGAGCAGCCAAT
77motif77_TCCTTGG
78motif78_NCGNWGCAWN
79motif79_ACATCTACAA
8motif8_CCATGN
80motif80_CTCTGAGAGAA
81motif81_NGCAGAA
82motif82_TTGAATCGCGG
83motif83_TTWTAAA
84motif84_GGKTTYT
85motif85_TWNNGCSNA
86motif86_CGCACAGACCGCGC
87motif87_RCGCACWS
88motif88_CCCTCTTT
89motif89_CGCCGTGTTTA
9motif9_ANGGCT
90motif90_TTATATCGC
91motif91_TTCTTTCG
92motif92_GCGKWWNAA
93motif93_TANTMTCTRWAT
94motif94_CATYTSA
95motif95_AGCGAGCTAGC
96motif96_TKNTTCTGTCTN
97motif97_TTCCCT
98motif98_GCCGAAGATT
99motif99_GYGTSANACG
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Template:NonRedundantMotifRender&oldid=4575610"