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Difference between revisions of "UBERON:0000014"

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|located_in=
 
|located_in=
 
|name=zone of skin
 
|name=zone of skin
−
|namespace=
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|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0002097
 
|part_of=UBERON:0002097

Latest revision as of 08:04, 12 September 2014

Name:zone of skin
Namespace:FANTOM
Definition:"A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
Xrefs:
links:

EHDAA2:0001844
EHDAA:6530
EV:0100152
FMA:86166
GAID:933
[1]
[ 200px-Skin.svg.png 200px-Skin.svg.png]
MA:0000151
MAT:0000284
MESH:A.17.815
MIAA:0000284
OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
SCTID:20795001

VHOG:0000860
Synonyms: "portion of skin" EXACT []
"region of skin" EXACT []
"skin" EXACT [MA:0000151]
"skin region" EXACT []
"skin zone" EXACT []
Comments:we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0002097(skin of body)



Children

is a:UBERON:0001419 (skin of limb),FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0103765 (dermatofibroma cell line),FF:10702-109G9 (basal cell carcinoma cell line:TE 354.T),FF:10713-109I2 (),FF:10791-110H8 (keratoacanthoma cell line:HKA-1)
derives from:FF:0010065 (human skin - fetal sample),FF:0010074 (human skin - adult sample),FF:0011308 (mouse skin- adult sample),FF:0011397 (mouse skin- neonate N00 sample),FF:0011400 (mouse skin- neonate N03 sample),FF:0011406 (mouse skin- neonate N06 sample),FF:0011421 (mouse skin- neonate N10 sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000014 (zone of skin), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97-, p@chr13:113381448..113381495
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97p1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97p2@Skint11
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_3815306e404cc02768d638d2ad371b97p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_3815306e404cc02768d638d2ad371b97p1@Skint11
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_3815306e404cc02768d638d2ad371b97p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_3815306e404cc02768d638d2ad371b97p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_3815306e404cc02768d638d2ad371b97p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_3815306e404cc02768d638d2ad371b97p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_3815306e404cc02768d638d2ad371b97p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_3815306e404cc02768d638d2ad371b97p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_3815306e404cc02768d638d2ad371b97p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_3815306e404cc02768d638d2ad371b97p2@Pla2g2f
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5bp6@Mfsd4
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5bp1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_8adb6cd5cf4b280d09cce420750d0e5bp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_8adb6cd5cf4b280d09cce420750d0e5bp1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_8adb6cd5cf4b280d09cce420750d0e5bp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_8adb6cd5cf4b280d09cce420750d0e5bp6@Mfsd4
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Lyg2
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:134595955..134595965, -
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_526f83c7d6b6d3f97bfb1c5d1527af2fp@chr3:138004932..138004945, +
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4p@chr7:117436977..117436981, -
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4p@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_93c2ce2883610c70219af0064a8c6bb4p@chr1:89485356..89485361, +
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_93c2ce2883610c70219af0064a8c6bb4p@chr4:111707315..111707319, +
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4p6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_93c2ce2883610c70219af0064a8c6bb4p6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_93c2ce2883610c70219af0064a8c6bb4p@chr7:117436977..117436981, -
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28fp1@Skint5
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_87f484d437a2cfb1c620866f9472d28fp1@Skint5
1.65e-69FFCP PHASE1:Mm9::chr3:93250018..93250027,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93250018..93250027, +
1.65e-69FFCP PHASE1:Mm9::chr3:93247460..93247471,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93247460..93247471, +
1.65e-69FFCP PHASE1:Mm9::chr16:56831979..56831988,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p13@Tmem45a
1.65e-69FFCP PHASE1:Mm9::chr17:14011908..14011919,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p13@Mllt4
1.65e-69FFCP PHASE1:Mm9::chr5:113617681..113617724,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr5:113617681..113617724, -
1.65e-69FFCP PHASE2:Mm9::chr3:93249466..93249478,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93249466..93249478, +
1.65e-69FFCP PHASE2:Mm9::chr6:144579044..144579056,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr6:144579044..144579056, -
1.65e-69FFCP PHASE1:Mm9::chr19:25196775..25196781,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2+, p@chr19:25196775..25196781
1.65e-69FFCP PHASE1:Mm9::chr15:12444430..12444439,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr15:12444430..12444439, -
1.65e-69FFCP PHASE1:Mm9::chr14:21082655..21082682,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr14:21082655..21082682, -
1.65e-69FFCP PHASE1:Mm9::chr11:99957587..99957593,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Krt35
1.65e-69FFCP PHASE2:Mm9::chr1:53971472..53971483,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr1:53971472..53971483, -
1.65e-69FFCP PHASE1:Mm9::chr6:97778294..97778306,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2+, p@chr6:97778294..97778306
1.65e-69FFCP PHASE1:Mm9::chr3:93248809..93248818,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248809..93248818, +
1.65e-69FFCP PHASE1:Mm9::chr8:63958211..63958219,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr8:63958211..63958219, +
1.65e-69FFCP PHASE2:Mm9::chr3:93248889..93248897,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248889..93248897, +
1.65e-69FFCP PHASE1:Mm9::chr15:101770858..101770865,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Krt79
1.65e-69FFCP PHASE1:Mm9::chr3:93249466..93249478,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93249466..93249478, +
1.65e-69FFCP PHASE1:Mm9::chr6:144579044..144579056,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr6:144579044..144579056, -
1.65e-69FFCP PHASE2:Mm9::chr3:93250018..93250027,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93250018..93250027, +
1.65e-69FFCP PHASE1:Mm9::chr18:20469239..20469258,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Dsg1a
1.65e-69FFCP PHASE1:Mm9::chr11:115168521..115168541,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p1@Otop2
1.65e-69FFCP PHASE2:Mm9::chr6:97778294..97778306,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr6:97778294..97778306, +
1.65e-69FFCP PHASE1:Mm9::chr3:93248462..93248471,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr3:93248462..93248471, +
1.65e-69FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p8@Zdhhc21
1.65e-69FFCP PHASE2:Mm9::chr11:95086849..95086855,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p3@ENSMUST00000150818
1.65e-69FFCP PHASE1:Mm9::chr1:53971472..53971483,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr1:53971472..53971483, -
1.65e-69FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr9:67169769..67169780, -
1.65e-69FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr9:43876286..43876293, +
1.65e-69FFCP PHASE2:Mm9::chr18:20469239..20469258,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Dsg1a
1.65e-69FFCP PHASE2:Mm9::chr11:99913595..99913606,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p1@ENSMUST00000136820, p1@uc007lke.1
1.65e-69FFCP PHASE2:Mm9::chr10:82296700..82296710,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p12@Txnrd1
1.65e-69FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_af2a42a7b1b1d7cab146f27cd8eb0ef2p2@Krt79
1.65e-69FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_af2a42a7b1b1d7cab146f27cd8eb0ef2p@chr8:63958211..63958219, +

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