UBERON:0000058: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000058
|name=duct
|namespace=
|def="A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their dest...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:08, 15 June 2012
| Name: | duct | ||
|---|---|---|---|
| Definition: | "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical duct" EXACT [] "exocrine duct" RELATED [] "exocrine gland duct" RELATED [] | ||
| Comments: | TODO - make distinctions between duct and tube clearer. Single layer of cells vs multiples? Function (e.g. exocrine gland duct?). Different ontologies use it in different ways | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004111(anatomical conduit) |
|---|
Children
| is a: | UBERON:0002173 (alveolar duct),UBERON:0003928 (digestive system duct),UBERON:0005904 (duct of male reproductive system),UBERON:0006553 (renal duct),UBERON:0014716 (interlobular duct),FF:10489-107B3 (),FF:10515-107E2 () |
|---|---|
| part of: | CL:0000068 (duct epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
... further results Mouse (Mus musculus)
- 10196-103E7 (ductus deferens, adult)
- 10197-103E8 (epididymis, adult)
- 10201-103F3 (seminal vesicle, adult)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10432-106D9 (bile duct carcinoma cell line:HuCCT1)
- 10489-107B3
- 10496-107C1 (bile duct carcinoma cell line:TFK-1)
- 10515-107E2
- 10533-107G2
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000058 (duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.28e-50 | FFCP PHASE1:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr5:145240607..145240622, - |
| 5.28e-50 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585048..63585062, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585048..63585062, - |
| 5.28e-50 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585020..63585025, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr14:63585020..63585025, - |
| 5.28e-50 | FFCP PHASE2:Mm9::chr5:145240607..145240622,-#_3ec3cbda0089ea4d5fddef48c5a9d2a8 | p@chr5:145240607..145240622, - |
| 6.59e-38 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bb | p@chr10:127470655..127470664, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bb | p@chr14:63585028..63585037, - |
| 6.59e-38 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bb | p4@Defb42 |
| 6.59e-38 | FFCP PHASE1:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620140..30620158, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr6:30620140..30620158,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620140..30620158, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bb | p@chrX:154140764..154140773, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_f5c99666d3583946692206a046ceb4bb | p@chr10:127470655..127470664, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chrX:154140764..154140773,+#_f5c99666d3583946692206a046ceb4bb | p@chrX:154140764..154140773, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_f5c99666d3583946692206a046ceb4bb | p4@Defb42 |
| 6.59e-38 | FFCP PHASE1:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620232..30620242, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr6:30620232..30620242,+#_f5c99666d3583946692206a046ceb4bb | p@chr6:30620232..30620242, + |
| 6.59e-38 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bb | p4@Spink12 |
| 6.59e-38 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_f5c99666d3583946692206a046ceb4bb | p@chr14:63585028..63585037, - |
| 6.59e-38 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_f5c99666d3583946692206a046ceb4bb | p4@Spink12 |
| 9.08e-34 | FFCP PHASE2:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52 | p@chr17:46686583..46686590, - |
| 9.08e-34 | FFCP PHASE1:Hg19::chr17:46686583..46686590,-#_5b31fd97b3579057a9c8d5368c443c52 | p@chr17:46686583..46686590, - |
| 9.25e-34 | FFCP PHASE2:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77 | p1@9230102O04Rik |
| 9.25e-34 | FFCP PHASE1:Mm9::chr2:9811213..9811223,-#_f28772590192ca5ecb06ddd535dcdc77 | p1@9230102O04Rik |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617607..125617617, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr3:140961228..140961237, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE2 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618661..125618677, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9 | p1@LCN9 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr15:25165150..25165161, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr15:25165150..25165161,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr15:25165150..25165161, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617636..125617646, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr14:105935020..105935028, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69951723..69951737, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:105935020..105935028,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr14:105935020..105935028, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9 | p3@PATE2 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE1 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618739..125618756, - |
| 4.52e-32 | FFCP PHASE2:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chrX:112044378..112044412, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618495..125618517, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@EDDM3A |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125617607..125617617,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617607..125617617, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:21213984..21213993,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@EDDM3A |
| 4.52e-32 | FFCP PHASE1:Hg19::chr3:140961228..140961237,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr3:140961228..140961237, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:69951723..69951737,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69951723..69951737, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125648641..125648646,-#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE2 |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618661..125618677,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618661..125618677, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125617636..125617646,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125617636..125617646, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125648685..125648688,-#_bb9afff89598642e0be044d9f1eac2f9 | p3@PATE2 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125616184..125616201,+#_bb9afff89598642e0be044d9f1eac2f9 | p2@PATE1 |
| 4.52e-32 | FFCP PHASE1:Hg19::chrX:112044378..112044412,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chrX:112044378..112044412, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69950851..69950887, + |
| 4.52e-32 | FFCP PHASE1:Hg19::chr11:125618739..125618756,-#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618739..125618756, - |
| 4.52e-32 | FFCP PHASE1:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9 | p3@EDDM3A |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:69950851..69950887,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:69950851..69950887, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr11:125618495..125618517,+#_bb9afff89598642e0be044d9f1eac2f9 | p@chr11:125618495..125618517, + |
| 4.52e-32 | FFCP PHASE2:Hg19::chr9:138555154..138555159,+#_bb9afff89598642e0be044d9f1eac2f9 | p1@LCN9 |
| 4.52e-32 | FFCP PHASE2:Hg19::chr14:21214091..21214097,+#_bb9afff89598642e0be044d9f1eac2f9 | p3@EDDM3A |
| 8.6e-32 | FFCP PHASE2:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1b | p3@Gpr64 |
| 8.6e-32 | FFCP PHASE1:Mm9::chrX:156828404..156828426,+#_b095e5966b8ce23072f8e1d2475d5b1b | p3@Gpr64 |
| 5.74e-29 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31 | p@chr2:152388713..152388729, + |
| 5.74e-29 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_ffa528b688cce2c48f8946992ee53a31 | p@chr2:152388713..152388729, + |
| 8.27e-29 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4 | p2@D730048I06Rik, p2@Gm17727 |
| 8.27e-29 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4 | p4@Cyb561 |
| 8.27e-29 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4 | p@chr11:76361451..76361499, + |
| 8.27e-29 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_19638a4c2fb752ba910b786007fab5a4 | p2@D730048I06Rik, p2@Gm17727 |
| 8.27e-29 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_19638a4c2fb752ba910b786007fab5a4 | p@chr11:76361451..76361499, + |
| 8.27e-29 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_19638a4c2fb752ba910b786007fab5a4 | p4@Cyb561 |
| 1.03e-28 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p2@Eddm3b |
| 1.03e-28 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr14:63627556..63627564, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26611246..26611253, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr5:145240547..145240560, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr14:63627556..63627564, - |
| 1.03e-28 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26732045..26732085, + |
| 1.03e-28 | FFCP PHASE1:Mm9::chr5:145240547..145240560,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr5:145240547..145240560, - |
| 1.03e-28 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26611246..26611253, - |
| 1.03e-28 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p2@Eddm3b |
| 1.03e-28 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_da7cccfd61b5668e92bd70b5f5d16bd8 | p@chr9:26732045..26732085, + |
| 1.28e-28 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr2:69981027..69981032, + |
| 1.28e-28 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr2:69981027..69981032, + |
| 1.28e-28 | FFCP PHASE2:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr15:27418016..27418056, + |
| 1.28e-28 | FFCP PHASE1:Mm9::chr15:27418016..27418056,+#_4c50a4f9807601d9e96ae5eac100e264 | p@chr15:27418016..27418056, + |
| 1.58e-28 | FFCP PHASE1:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929 | p@chr12:86818215..86818223, - |
| 1.58e-28 | FFCP PHASE2:Mm9::chr12:86818215..86818223,-#_22f9d17fe2fff49f06f4837517be5929 | p@chr12:86818215..86818223, - |
| 2.49e-28 | FFCP PHASE1:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99 | p2@ENST00000491264 |
| 2.49e-28 | FFCP PHASE2:Hg19::chr17:46679202..46679220,+#_ed26049e635601cbf671b4ea3b65ae99 | p2@ENST00000491264 |
| 8.13e-27 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbd | p@chr17:171147..171161, + |
| 8.13e-27 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_d14d6ad61e256f24cc48a3919c127dbd | p@chr17:171147..171161, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_b77a92ef88490d7e37654a5e57bc0927 | p1@Grxcr1 |
| 7.57e-26 | FFCP PHASE1:Mm9::chr15:54678915..54678922,-#_b77a92ef88490d7e37654a5e57bc0927 | p@chr15:54678915..54678922, - |
| 7.57e-26 | FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_b77a92ef88490d7e37654a5e57bc0927 | p@chr18:46301295..46301302, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chrX:20419453..20419476,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chrX:20419453..20419476, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr9:66860888..66860899, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr8:13414289..13414295, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr5:3909290..3909299, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr7:25563187..25563205,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr7:25563187..25563205, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr2:25678985..25679033,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr2:25678985..25679033, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_b77a92ef88490d7e37654a5e57bc0927 | p1@Tmprss7 |
| 7.57e-26 | FFCP PHASE1:Mm9::chr10:91753336..91753348,-#_b77a92ef88490d7e37654a5e57bc0927 | p@chr10:91753336..91753348, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_b77a92ef88490d7e37654a5e57bc0927 | p@chr7:27964761..27964768, + |
