Personal tools

UBERON:0000200

From FANTOM5_SSTAR

Revision as of 08:07, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:gyrus
Namespace:FANTOM
Definition:"A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus]
Xrefs:
links:

BTO:0002495
FMA:83874
ncithesaurus:Cerebral_Gyrus

SCTID:279165009
Synonyms: "cerebral gyrus" EXACT [BTO:0002495]
"gyri" RELATED PLURAL [BTO:0002495]
"gyri of cerebrum" RELATED PLURAL [BTO:0002495]
"gyrus of cerebrum" RELATED [BTO:0002495]
"gyrus of neuraxis" EXACT [FMA:83874]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001869(cerebral hemisphere)



Children

is a:UBERON:0002581 (postcentral gyrus),UBERON:0002771 (middle temporal gyrus),UBERON:0007190 (paracentral gyrus),UBERON:0015593 (frontal gyrus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000200 (gyrus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr5:160720498..160720507,-#_d6fea9d87e24f4d58ec4ce531d131623p@chr5:160720498..160720507, -
1.83e-98FFCP PHASE2:Hg19::chr5:160720498..160720507,-#_d6fea9d87e24f4d58ec4ce531d131623p@chr5:160720498..160720507, -
1.86e-98FFCP PHASE1:Hg19::chr3:123813487..123813494,+#_05f9b8ad78d1d6b9bc1a7da5b4ff9474p22@KALRN
1.86e-98FFCP PHASE2:Hg19::chr3:123813487..123813494,+#_05f9b8ad78d1d6b9bc1a7da5b4ff9474p22@KALRN
3.08e-98FFCP PHASE2:Hg19::chr2:76412119..76412138,+#_433d4e07d3ee327eb0c75ddafb2e22fdp@chr2:76412119..76412138, +
3.08e-98FFCP PHASE1:Hg19::chr2:76412119..76412138,+#_433d4e07d3ee327eb0c75ddafb2e22fdp@chr2:76412119..76412138, +
5.87e-85FFCP PHASE1:Hg19::chr21:16999573..16999589,-#_c3a0b1d297d7768fcc55bf1cec050422p@chr21:16999573..16999589, -
5.87e-85FFCP PHASE2:Hg19::chr21:16999573..16999589,-#_c3a0b1d297d7768fcc55bf1cec050422p@chr21:16999573..16999589, -
1.86e-84FFCP PHASE2:Hg19::chr4:90625735..90625756,-#_1f4f311c5ef369512da9b5db45c07c5ep@chr4:90625735..90625756, -
1.86e-84FFCP PHASE1:Hg19::chr4:90625735..90625756,-#_1f4f311c5ef369512da9b5db45c07c5ep@chr4:90625735..90625756, -
1.86e-84FFCP PHASE1:Hg19::chr12:45307764..45307772,-#_1f4f311c5ef369512da9b5db45c07c5ep16@NELL2
1.86e-84FFCP PHASE2:Hg19::chr12:45307764..45307772,-#_1f4f311c5ef369512da9b5db45c07c5ep16@NELL2
3.62e-82FFCP PHASE2:Hg19::chr21:16999470..16999481,-#_af0e897e88c6d556555feab94ba1ad7dp@chr21:16999470..16999481, -
3.62e-82FFCP PHASE2:Hg19::chr18:5721892..5721909,+#_af0e897e88c6d556555feab94ba1ad7dp@chr18:5721892..5721909, +
3.62e-82FFCP PHASE1:Hg19::chr18:5721892..5721909,+#_af0e897e88c6d556555feab94ba1ad7dp@chr18:5721892..5721909, +
3.62e-82FFCP PHASE1:Hg19::chr21:16999470..16999481,-#_af0e897e88c6d556555feab94ba1ad7dp@chr21:16999470..16999481, -
6.1e-79FFCP PHASE2:Hg19::chr10:79383809..79383833,+#_94bd336db2c9da009776ab4bd43336f3p@chr10:79383809..79383833, +
6.1e-79FFCP PHASE1:Hg19::chr10:79383809..79383833,+#_94bd336db2c9da009776ab4bd43336f3p@chr10:79383809..79383833, +
6.97e-79FFCP PHASE1:Hg19::chr10:65820364..65820377,+#_4d45ffee8057a96be7ac805f2a34da03p@chr10:65820364..65820377, +
6.97e-79FFCP PHASE1:Hg19::chr21:16999597..16999614,-#_4d45ffee8057a96be7ac805f2a34da03p@chr21:16999597..16999614, -
6.97e-79FFCP PHASE2:Hg19::chr21:16999597..16999614,-#_4d45ffee8057a96be7ac805f2a34da03p@chr21:16999597..16999614, -
6.97e-79FFCP PHASE2:Hg19::chr10:65820364..65820377,+#_4d45ffee8057a96be7ac805f2a34da03p@chr10:65820364..65820377, +
4.67e-75FFCP PHASE1:Hg19::chr12:40713926..40713942,+#_1c72e3f1e6f3be7951928f8b9984de91p14@LRRK2
4.67e-75FFCP PHASE2:Hg19::chr12:40713926..40713942,+#_1c72e3f1e6f3be7951928f8b9984de91p14@LRRK2
8.94e-75FFCP PHASE2:Hg19::chr8:27598379..27598404,-#_4b7891c472e61d03fa28a062c530e502p@chr8:27598379..27598404, -
8.94e-75FFCP PHASE1:Hg19::chr8:27598379..27598404,-#_4b7891c472e61d03fa28a062c530e502p@chr8:27598379..27598404, -
4.08e-74FFCP PHASE2:Hg19::chr2:189249038..189249043,-#_1486589e97b93de27e2aebb3842bf52ap@chr2:189249038..189249043, -
4.08e-74FFCP PHASE1:Hg19::chr2:189249038..189249043,-#_1486589e97b93de27e2aebb3842bf52ap@chr2:189249038..189249043, -
4.26e-74FFCP PHASE2:Hg19::chr16:19191426..19191435,+#_506a007ac7e2fb6a65fcc54ba66a39adp@chr16:19191426..19191435, +
4.26e-74FFCP PHASE1:Hg19::chr16:19191426..19191435,+#_506a007ac7e2fb6a65fcc54ba66a39adp@chr16:19191426..19191435, +
6.76e-74FFCP PHASE1:Hg19::chr3:115324099..115324113,+#_cb9302b8fc60204a0bdce3488fcfb933p@chr3:115324099..115324113, +
6.76e-74FFCP PHASE2:Hg19::chr3:115324099..115324113,+#_cb9302b8fc60204a0bdce3488fcfb933p@chr3:115324099..115324113, +
1.44e-73FFCP PHASE2:Hg19::chr20:60174794..60174806,+#_30df176ca91a104ef76523d25ccbb4b5p4@CDH4
1.44e-73FFCP PHASE1:Hg19::chr20:60174794..60174806,+#_30df176ca91a104ef76523d25ccbb4b5p4@CDH4
6.58e-70FFCP PHASE1:Hg19::chr2:76412139..76412163,+#_cd1763951af92fcbc32428a5b1f26f09p@chr2:76412139..76412163, +
6.58e-70FFCP PHASE2:Hg19::chr2:76412139..76412163,+#_cd1763951af92fcbc32428a5b1f26f09p@chr2:76412139..76412163, +
7.41e-70FFCP PHASE2:Hg19::chr3:178254022..178254025,+#_3022be13bb319d860cee46a330b734bdp4@KCNMB2
7.41e-70FFCP PHASE1:Hg19::chr3:178254022..178254025,+#_3022be13bb319d860cee46a330b734bdp4@KCNMB2
2.43e-69FFCP PHASE1:Hg19::chr14:87928470..87928490,-#_da5a3ed7a34a8f8d977b9929d15da735p@chr14:87928470..87928490, -
2.43e-69FFCP PHASE2:Hg19::chr14:87928470..87928490,-#_da5a3ed7a34a8f8d977b9929d15da735p@chr14:87928470..87928490, -
2.72e-69FFCP PHASE1:Hg19::chr1:162458051..162458067,-#_79e936232226747604346b0153786830p@chr1:162458051..162458067, -
2.72e-69FFCP PHASE2:Hg19::chr1:162458051..162458067,-#_79e936232226747604346b0153786830p@chr1:162458051..162458067, -
3.47e-69FFCP PHASE1:Hg19::chr20:62738879..62738896,-#_ac6116cfc3b6cac7b4860f325b692f72p2@NPBWR2
3.47e-69FFCP PHASE2:Hg19::chr20:62738879..62738896,-#_ac6116cfc3b6cac7b4860f325b692f72p2@NPBWR2
7.04e-69FFCP PHASE2:Hg19::chr13:47471045..47471055,-#_ba59866f5c613ee593a77de1eb8c720ep10@HTR2A
7.04e-69FFCP PHASE1:Hg19::chr13:47471045..47471055,-#_ba59866f5c613ee593a77de1eb8c720ep10@HTR2A
7.27e-69FFCP PHASE1:Hg19::chr2:220812508..220812521,+#_460e0bc8f78f748ef1ad2ebecf6e2b7cp@chr2:220812508..220812521, +
7.27e-69FFCP PHASE2:Hg19::chr2:220812508..220812521,+#_460e0bc8f78f748ef1ad2ebecf6e2b7cp@chr2:220812508..220812521, +
1.68e-68FFCP PHASE2:Hg19::chr12:91069081..91069092,+#_69aa6874fbb7d606ee2b4e9ffac4dc7fp@chr12:91069081..91069092, +
1.68e-68FFCP PHASE1:Hg19::chr12:91069081..91069092,+#_69aa6874fbb7d606ee2b4e9ffac4dc7fp@chr12:91069081..91069092, +
1.68e-68FFCP PHASE1:Hg19::chr14:71679425..71679447,+#_69aa6874fbb7d606ee2b4e9ffac4dc7fp1@ENST00000553621
1.68e-68FFCP PHASE2:Hg19::chr14:71679425..71679447,+#_69aa6874fbb7d606ee2b4e9ffac4dc7fp1@ENST00000553621
5.14e-68FFCP PHASE2:Hg19::chr10:68687632..68687644,+#_29937f9fa87cf047d20fb89edfdf9749p3@LRRTM3
5.14e-68FFCP PHASE1:Hg19::chr10:68687632..68687644,+#_29937f9fa87cf047d20fb89edfdf9749p3@LRRTM3
8.37e-67FFCP PHASE1:Hg19::chr19:10506527..10506555,-#_6d28baf874f8daa110b0dea43e158ec6p5@CDC37
8.37e-67FFCP PHASE2:Hg19::chr19:10506527..10506555,-#_6d28baf874f8daa110b0dea43e158ec6p5@CDC37
1.84e-66FFCP PHASE2:Hg19::chr6:131277510..131277530,-#_a5bc6510cfb21b8f9958ffe809067f2dp22@EPB41L2
1.84e-66FFCP PHASE1:Hg19::chr6:131277510..131277530,-#_a5bc6510cfb21b8f9958ffe809067f2dp22@EPB41L2
2.83e-66FFCP PHASE1:Hg19::chr6:73906231..73906237,+#_6aa227d1d38a089cf14f77a975b1fbfep@chr6:73906231..73906237, +
2.83e-66FFCP PHASE1:Hg19::chr11:132901592..132901601,-#_6aa227d1d38a089cf14f77a975b1fbfep@chr11:132901592..132901601, -
2.83e-66FFCP PHASE1:Hg19::chr8:27606125..27606134,-#_6aa227d1d38a089cf14f77a975b1fbfep6@CCDC25
2.83e-66FFCP PHASE2:Hg19::chr6:73906231..73906237,+#_6aa227d1d38a089cf14f77a975b1fbfep@chr6:73906231..73906237, +
2.83e-66FFCP PHASE2:Hg19::chr8:27606125..27606134,-#_6aa227d1d38a089cf14f77a975b1fbfep6@CCDC25
2.83e-66FFCP PHASE2:Hg19::chr11:132901592..132901601,-#_6aa227d1d38a089cf14f77a975b1fbfe-, p@chr11:132901592..132901601
2.89e-66FFCP PHASE2:Hg19::chr17:9550376..9550379,-#_5753883e13a19fde639a224ca12646c5p@chr17:9550376..9550379, -
2.89e-66FFCP PHASE1:Hg19::chr17:9550376..9550379,-#_5753883e13a19fde639a224ca12646c5p@chr17:9550376..9550379, -
3.24e-66FFCP PHASE1:Hg19::chr5:17404147..17404159,+#_b1096f393a645deb52976e071dbca16cp2@ENST00000508677
3.24e-66FFCP PHASE2:Hg19::chr5:17404147..17404159,+#_b1096f393a645deb52976e071dbca16cp2@ENST00000508677
5.08e-66FFCP PHASE2:Hg19::chr10:64136084..64136105,+#_c2b0b9798a9e56a825e239555ce8b4aep7@ZNF365
5.08e-66FFCP PHASE1:Hg19::chr10:64136084..64136105,+#_c2b0b9798a9e56a825e239555ce8b4aep7@ZNF365
5.13e-66FFCP PHASE1:Hg19::chr11:133197324..133197336,-#_21c1f97b9fb37b9ac94a774df29b0991p@chr11:133197324..133197336, -
5.13e-66FFCP PHASE2:Hg19::chr11:133197324..133197336,-#_21c1f97b9fb37b9ac94a774df29b0991p@chr11:133197324..133197336, -
5.13e-66FFCP PHASE2:Hg19::chr6:112803862..112803893,+#_21c1f97b9fb37b9ac94a774df29b0991+, p@chr6:112803862..112803893
5.13e-66FFCP PHASE1:Hg19::chr6:112803862..112803893,+#_21c1f97b9fb37b9ac94a774df29b0991p@chr6:112803862..112803893, +
7.11e-66FFCP PHASE2:Hg19::chr3:155394152..155394163,-#_23647ede80d92ef52e4d3b94329258a1p4@PLCH1
7.11e-66FFCP PHASE1:Hg19::chr3:155394152..155394163,-#_23647ede80d92ef52e4d3b94329258a1p4@PLCH1
7.17e-66FFCP PHASE1:Hg19::chr2:76412175..76412186,+#_887f3bfc2b3549d1394c2b11c08dd07ep@chr2:76412175..76412186, +
7.17e-66FFCP PHASE2:Hg19::chr2:76412175..76412186,+#_887f3bfc2b3549d1394c2b11c08dd07e+, p@chr2:76412175..76412186
1.25e-65FFCP PHASE2:Hg19::chr1:36024414..36024431,+#_77752c6d47a0ec52ba31c98bd7753884p3@AB383919
1.25e-65FFCP PHASE1:Hg19::chr1:36024414..36024431,+#_77752c6d47a0ec52ba31c98bd7753884p3@AB383919
2.44e-65FFCP PHASE1:Hg19::chr16:31001949..31001964,-#_6a3fefe4776e0c462768d6fbb94cd737p1@AL713744
2.44e-65FFCP PHASE2:Hg19::chr16:31001949..31001964,-#_6a3fefe4776e0c462768d6fbb94cd737p1@AL713744
7.87e-64FFCP PHASE2:Hg19::chr8:27606152..27606165,-#_8c395795acb07e15f442f65f649a20a6p3@CCDC25
7.87e-64FFCP PHASE1:Hg19::chr8:27606152..27606165,-#_8c395795acb07e15f442f65f649a20a6p3@CCDC25
1.02e-63FFCP PHASE2:Hg19::chr7:45113897..45113916,+#_733dfa5d25af86c38991add8594e9230+, p@chr7:45113897..45113916
1.02e-63FFCP PHASE1:Hg19::chr7:45113897..45113916,+#_733dfa5d25af86c38991add8594e9230p@chr7:45113897..45113916, +
1.71e-63FFCP PHASE1:Hg19::chr8:35828134..35828145,+#_caad34cc10e7ade7174a869417e0170dp@chr8:35828134..35828145, +
1.71e-63FFCP PHASE2:Hg19::chr8:35828134..35828145,+#_caad34cc10e7ade7174a869417e0170dp@chr8:35828134..35828145, +
2.22e-63FFCP PHASE1:Hg19::chr4:118292684..118292695,+#_cfe37098fa32cbe8a10c8539d8399067p@chr4:118292684..118292695, +
2.22e-63FFCP PHASE2:Hg19::chr4:118292684..118292695,+#_cfe37098fa32cbe8a10c8539d8399067p@chr4:118292684..118292695, +
3.08e-63FFCP PHASE2:Hg19::chr2:115200003..115200031,+#_9ed05c3243985f5612f4f511790da6c7p8@DPP10
3.08e-63FFCP PHASE1:Hg19::chr2:115200003..115200031,+#_9ed05c3243985f5612f4f511790da6c7p8@DPP10
3.43e-63FFCP PHASE2:Hg19::chr4:176882799..176882812,-#_1502cc95e9f835c9a88eb8dd3c31cb74p@chr4:176882799..176882812, -
3.43e-63FFCP PHASE1:Hg19::chr4:176882799..176882812,-#_1502cc95e9f835c9a88eb8dd3c31cb74p@chr4:176882799..176882812, -
1.11e-62FFCP PHASE1:Hg19::chr6:95445637..95445675,-#_bbbd6ed8ac5ba5eb36f2bc352f423152p@chr6:95445637..95445675, -
1.11e-62FFCP PHASE1:Hg19::chr2:17836640..17836651,+#_bbbd6ed8ac5ba5eb36f2bc352f423152p@chr2:17836640..17836651, +
1.11e-62FFCP PHASE2:Hg19::chr2:17836640..17836651,+#_bbbd6ed8ac5ba5eb36f2bc352f423152p@chr2:17836640..17836651, +
1.11e-62FFCP PHASE2:Hg19::chr6:95445637..95445675,-#_bbbd6ed8ac5ba5eb36f2bc352f423152p@chr6:95445637..95445675, -
1.37e-62FFCP PHASE1:Hg19::chr20:24043888..24043912,+#_89c977fd0169b3df1b32de7f130e516cp@chr20:24043888..24043912, +
1.37e-62FFCP PHASE2:Hg19::chr20:24043888..24043912,+#_89c977fd0169b3df1b32de7f130e516cp@chr20:24043888..24043912, +

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0000200&oldid=3277089"