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{{UBERON
{{UBERON
|id=UBERON:0000465
|alt_id=UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
|name=material anatomical entity
|namespace=
|def="Anatomical entity that has mass." [CARO:MAH]
|xref=AAO:0010264;;AEO:0000006;;BILA:0000006;;CARO:0000006;;EHDAA2:0003006;;FBbt:00007016;;FMA:67165;;HAO:0000006;;TAO:0001836;;TGMA:0001826
|is_a=UBERON:0001062
|synonym=
|comment=
|comment=
|alt_id=UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical entity that has mass." [CARO:MAH]
|subset=upper_level
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000465
|is_a=UBERON:0001062
|is_obsolete=
|located_in=
|located_in=
|name=material anatomical entity
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=upper_level
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0010264;;AEO:0000006;;BILA:0000006;;CARO:0000006;;EHDAA2:0003006;;FBbt:00007016;;FMA:67165;;HAO:0000006;;TAO:0001836;;TGMA:0001826
}}
}}

Latest revision as of 17:09, 12 September 2014

Name:material anatomical entity
Namespace:FANTOM
Definition:"Anatomical entity that has mass." [CARO:MAH]
Xrefs:
links:

AAO:0010264
AEO:0000006
BILA:0000006
CARO:0000006
EHDAA2:0003006
FBbt:00007016
FMA:67165
HAO:0000006
TAO:0001836

TGMA:0001826
Alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
Subset: upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001062(anatomical entity)



Children

is a:UBERON:0000061 (anatomical structure),UBERON:0000463 (organism substance),UBERON:0005423 (developing anatomical structure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results Mouse (Mus musculus)

  • 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
  • 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
  • 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
  • 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
  • 10004-101A9 (chicken embryo whole body, day10 (HH37))
  • 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
  • 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
  • 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
  • 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
  • 10010-101C1 (adipose tissue, adult, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000465 (material anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results