Personal tools

Difference between revisions of "UBERON:0000473"

From FANTOM5_SSTAR

Jump to: navigation, search
 
Line 14: Line 14:
 
|located_in=
 
|located_in=
 
|name=testis
 
|name=testis
−
|namespace=
+
|namespace=FANTOM
 
|obo_creation_date=
 
|obo_creation_date=
 
|part_of=UBERON:0000079
 
|part_of=UBERON:0000079

Latest revision as of 08:09, 12 September 2014

Name:testis
Namespace:FANTOM
Definition:"gonad of a male animal, produces and releases sperm." [Wikipedia:Testis]
Xrefs:
links:

AAO:0000606
BILA:0000124
BTO:0001363
EFO:0000984
EHDAA2:0002007
EHDAA:8146
EMAPA:17972
EV:0100102
FBbt:00004928
FMA:7210
GAID:396
galen:Testis
HAO:0001007
[ 200px-Gray1144.png 200px-Gray1144.png]
MA:0000411
MAT:0000132
MESH:A.05.360.444.849
MIAA:0000132
ncithesaurus:Testis
OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
SCTID:181431007
TAO:0000598
VHOG:0000252
WBbt:0006794
XAO:0000157

ZFA:0000598
Synonyms: "genitalia of male organism gonad" EXACT [OBOL:automatic]
"genitalia of male organism gonada" EXACT [OBOL:automatic]
"gonad of genitalia of male organism" EXACT [OBOL:automatic]
"gonad of male genitalia" EXACT [OBOL:automatic]
"gonad of male genitals" EXACT [OBOL:automatic]
"gonad of male organism genitalia" EXACT [OBOL:automatic]
"gonad of male organism reproductive system" EXACT [OBOL:automatic]
"gonad of male reproductive system" EXACT [OBOL:automatic]
"gonad of reproductive system of male organism" EXACT [OBOL:automatic]
"gonada of genitalia of male organism" EXACT [OBOL:automatic]
"gonada of male genitalia" EXACT [OBOL:automatic]
"gonada of male genitals" EXACT [OBOL:automatic]
"gonada of male organism genitalia" EXACT [OBOL:automatic]
"gonada of male organism reproductive system" EXACT [OBOL:automatic]
"gonada of male reproductive system" EXACT [OBOL:automatic]
"gonada of reproductive system of male organism" EXACT [OBOL:automatic]
"male genitalia gonad" EXACT [OBOL:automatic]
"male genitalia gonada" EXACT [OBOL:automatic]
"male genitals gonad" EXACT [OBOL:automatic]
"male gonad" EXACT [OBOL:automatic]
"male organism genitalia gonad" EXACT [OBOL:automatic]
"male organism genitalia gonada" EXACT [OBOL:automatic]
"male organism reproductive system gonad" EXACT [OBOL:automatic]
"male organism reproductive system gonada" EXACT [OBOL:automatic]
"male reproductive system gonad" EXACT [OBOL:automatic]
"male reproductive system gonada" EXACT [OBOL:automatic]
"orchis" RELATED [BTO:0001363]
"reproductive system of male organism gonad" EXACT [OBOL:automatic]
"reproductive system of male organism gonada" EXACT [OBOL:automatic]
"testes" RELATED PLURAL []
"testicle" EXACT [FMA:7210]
"testiculus" RELATED [BTO:0001363]
Alt_id: UBERON:0002117
UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000991(gonad),UBERON:0003135(male reproductive organ)
disjoint_from:UBERON:0000992(female gonad),UBERON:0009117(indifferent gonad)
develops_from:UBERON:0009117(indifferent gonad)
part_of:UBERON:0000079(male reproductive system)



Children

is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15)
derives from:FF:0010026 (human testis - adult sample),FF:0011332 (mouse testis- embryo E13 sample),FF:0011352 (mouse testis- embryo E15 sample),FF:0011364 (mouse testis- embryo E16 sample),FF:0011372 (mouse testis- embryo E17 sample),FF:0011377 (mouse testis- embryo E18 sample),FF:0011383 (mouse testis- adult sample),FF:0011412 (mouse testis- neonate N07 sample),FF:0011422 (mouse testis- neonate N10 sample),FF:0011433 (mouse testis- neonate N20 sample),FF:0011495 (mouse testis- neonate N30 sample),FF:0011509 (mouse testis- neonate N00 sample),FF:0101560 (testicular cancer cell line sample)
part of:UBERON:0000998 (seminal vesicle),UBERON:0001343 (seminiferous tubule of testis),UBERON:0004910 (epithelium of male gonad),UBERON:0005297 (testis sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000473 (testis), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
8.98e-147FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_1fddf08adcbc1fdf3edb8288ea1927cep2@KLF17
8.98e-147FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_1fddf08adcbc1fdf3edb8288ea1927cep2@KLF17
1.5e-122FFCP PHASE2:Hg19::chr1:44584530..44584537,+#_c726ab33e3a6c0047152e35904f138d6p6@KLF17
1.5e-122FFCP PHASE2:Hg19::chr5:140053152..140053174,-#_c726ab33e3a6c0047152e35904f138d6p1@DND1
1.5e-122FFCP PHASE1:Hg19::chr1:44584530..44584537,+#_c726ab33e3a6c0047152e35904f138d6p6@KLF17
1.5e-122FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_c726ab33e3a6c0047152e35904f138d6p1@DND1
1.74e-110FFCP PHASE1:Hg19::chr19:22469215..22469229,+#_5eeec112f4422db71f0faa06a73ede53p2@ZNF729
1.74e-110FFCP PHASE2:Hg19::chr19:22469215..22469229,+#_5eeec112f4422db71f0faa06a73ede53p2@ZNF729
2.1e-110FFCP PHASE2:Hg19::chr12:102133233..102133245,-#_0aa52595a02755675b4bf33be4592fc7p1@SYCP3
2.1e-110FFCP PHASE1:Hg19::chr12:102133233..102133245,-#_0aa52595a02755675b4bf33be4592fc7p1@SYCP3
1.77e-102FFCP PHASE1:Hg19::chr10:118083953..118083965,+#_049e880d470729cf2a62c38d343cb51ap1@C10orf96
1.77e-102FFCP PHASE1:Hg19::chr1:44584544..44584557,+#_049e880d470729cf2a62c38d343cb51ap4@KLF17
1.77e-102FFCP PHASE2:Hg19::chr10:118083953..118083965,+#_049e880d470729cf2a62c38d343cb51ap1@C10orf96
1.77e-102FFCP PHASE2:Hg19::chr1:44584544..44584557,+#_049e880d470729cf2a62c38d343cb51ap4@KLF17
3.32e-102FFCP PHASE2:Hg19::chr9:135232083..135232140,-#_f55a752716e7f1d0322ff24d60607c60p@chr9:135232083..135232140, -
3.32e-102FFCP PHASE1:Hg19::chr9:135232083..135232140,-#_f55a752716e7f1d0322ff24d60607c60p@chr9:135232083..135232140, -
2.26e-98FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr15:33905298..33905312, +
2.26e-98FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_c9b20f6c77b8a9250022ca6f2d43a7df+, p@chr1:227034858..227034868
2.26e-98FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@CNR2
2.26e-98FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:38709054..38709062, +
2.26e-98FFCP PHASE2:Hg19::chr1:44584568..44584585,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp3@KLF17
2.26e-98FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:92406327..92406341, +
2.26e-98FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478934..27478945, -
2.26e-98FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478988..27478996, -
2.26e-98FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr11:107782394..107782402, +
2.26e-98FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883856..51883866, -
2.26e-98FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_c9b20f6c77b8a9250022ca6f2d43a7df-, p@chr19:51883879..51883908
2.26e-98FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883915..51883934, -
2.26e-98FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr7:2309320..2309348, -
2.26e-98FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp2@BX538205
2.26e-98FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@NANOGP1
2.26e-98FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431284..40431296, -
2.26e-98FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431300..40431312, -
2.26e-98FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr6:6032547..6032560, -
2.26e-98FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp11@PPM1N
2.26e-98FFCP PHASE2:Hg19::chr4:779349..779383,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr4:779349..779383, +
2.26e-98FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr16:9069001..9069012, -
2.26e-98FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr16:9069001..9069012, -
2.26e-98FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431284..40431296, -
2.26e-98FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:40431300..40431312, -
2.26e-98FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp11@PPM1N
2.26e-98FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883856..51883866, -
2.26e-98FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883879..51883908, -
2.26e-98FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr19:51883915..51883934, -
2.26e-98FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:227034858..227034868, +
2.26e-98FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@CNR2
2.26e-98FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:38709054..38709062, +
2.26e-98FFCP PHASE1:Hg19::chr1:44584568..44584585,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp3@KLF17
2.26e-98FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr1:92406327..92406341, +
2.26e-98FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr11:107782394..107782402, +
2.26e-98FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717031..32717041, +
2.26e-98FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717043..32717051, +
2.26e-98FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@NANOGP1
2.26e-98FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr15:33905298..33905312, +
2.26e-98FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp2@BX538205
2.26e-98FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr6:6032547..6032560, -
2.26e-98FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717031..32717041, +
2.26e-98FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr12:32717043..32717051, +
2.26e-98FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_c9b20f6c77b8a9250022ca6f2d43a7df-, p@chr7:2309320..2309348
2.26e-98FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:233989556..233989568, +
2.26e-98FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478934..27478945, -
2.26e-98FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr21:27478988..27478996, -
2.26e-98FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_c9b20f6c77b8a9250022ca6f2d43a7df+, p@chr2:233989556..233989568
2.26e-98FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:65786044..65786055, +
2.26e-98FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755206..71755213, +
2.26e-98FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755221..71755234, +
2.26e-98FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755236..71755242, +
2.26e-98FFCP PHASE1:Hg19::chr4:779349..779383,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr4:779349..779383, +
2.26e-98FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:65786044..65786055, +
2.26e-98FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp5@LRRC6
2.26e-98FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_c9b20f6c77b8a9250022ca6f2d43a7dfp6@LRRC6
2.26e-98FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755206..71755213, +
2.26e-98FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755221..71755234, +
2.26e-98FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_c9b20f6c77b8a9250022ca6f2d43a7dfp@chr2:71755236..71755242, +
5.52e-98FFCP PHASE1:Hg19::chr17:12125154..12125159,+#_6698f06c2a4b971ea08a17a4128393bap@chr17:12125154..12125159, +
5.52e-98FFCP PHASE2:Hg19::chr17:12125154..12125159,+#_6698f06c2a4b971ea08a17a4128393bap@chr17:12125154..12125159, +
3.9e-88FFCP PHASE2:Hg19::chr12:10183271..10183289,+#_08e858a72c6110bb7c0269bb50d60837p1@CLEC9A
3.9e-88FFCP PHASE1:Hg19::chr12:10183271..10183289,+#_08e858a72c6110bb7c0269bb50d60837p1@CLEC9A
1.09e-80FFCP PHASE1:Hg19::chr10:135043750..135043761,+#_cc1b1e267dc1efb6444b3f8dfd0148e6p6@UTF1
1.09e-80FFCP PHASE2:Hg19::chr10:135043750..135043761,+#_cc1b1e267dc1efb6444b3f8dfd0148e6p6@UTF1
4.74e-79FFCP PHASE2:Hg19::chr11:19838901..19838948,+#_fd6a46e51203066a7cffd9f46f6635aap@chr11:19838901..19838948, +
4.74e-79FFCP PHASE2:Hg19::chr4:3931902..3931913,+#_fd6a46e51203066a7cffd9f46f6635aap@chr4:3931902..3931913, +
4.74e-79FFCP PHASE1:Hg19::chrX:114524275..114524308,+#_fd6a46e51203066a7cffd9f46f6635aap1@LUZP4
4.74e-79FFCP PHASE2:Hg19::chr3:39268574..39268596,+#_fd6a46e51203066a7cffd9f46f6635aap@chr3:39268574..39268596, +
4.74e-79FFCP PHASE2:Hg19::chr3:47297118..47297149,+#_fd6a46e51203066a7cffd9f46f6635aap@chr3:47297118..47297149, +
4.74e-79FFCP PHASE2:Hg19::chr1:27385778..27385789,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:27385778..27385789, +
4.74e-79FFCP PHASE2:Hg19::chr1:65612630..65612670,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:65612630..65612670, +
4.74e-79FFCP PHASE2:Hg19::chrX:114524275..114524308,+#_fd6a46e51203066a7cffd9f46f6635aap1@LUZP4
4.74e-79FFCP PHASE2:Hg19::chr1:10476999..10477027,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:10476999..10477027, +
4.74e-79FFCP PHASE2:Hg19::chr7:5447185..5447197,-#_fd6a46e51203066a7cffd9f46f6635aap23@TNRC18
4.74e-79FFCP PHASE2:Hg19::chr12:8045012..8045024,+#_fd6a46e51203066a7cffd9f46f6635aap4@NANOGP1
4.74e-79FFCP PHASE2:Hg19::chr19:42965112..42965160,+#_fd6a46e51203066a7cffd9f46f6635aa+, p@chr19:42965112..42965160
4.74e-79FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_fd6a46e51203066a7cffd9f46f6635aap@chr5:133764015..133764029, +
4.74e-79FFCP PHASE1:Hg19::chr11:19838901..19838948,+#_fd6a46e51203066a7cffd9f46f6635aap@chr11:19838901..19838948, +
4.74e-79FFCP PHASE1:Hg19::chr12:118542383..118542415,-#_fd6a46e51203066a7cffd9f46f6635aap@chr12:118542383..118542415, -
4.74e-79FFCP PHASE1:Hg19::chr12:8045012..8045024,+#_fd6a46e51203066a7cffd9f46f6635aap4@NANOGP1
4.74e-79FFCP PHASE1:Hg19::chr19:42965112..42965160,+#_fd6a46e51203066a7cffd9f46f6635aap@chr19:42965112..42965160, +
4.74e-79FFCP PHASE1:Hg19::chr1:10476999..10477027,+#_fd6a46e51203066a7cffd9f46f6635aap@chr1:10476999..10477027, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Either of paired male reproductive organs which are involved in the production of sperm and male sex hormones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Male reproductive organ.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp2.gsc.riken.jp/5/sstar/index.php?title=UBERON:0000473&oldid=3277116"