Difference between revisions of "UBERON:0000915"
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{{UBERON | {{UBERON | ||
− | | | + | |alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 |
− | | | + | |anatomical_img_id=FMA:9576 |
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|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | |comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
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|created_by= | |created_by= | ||
− | | | + | |def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] |
− | |||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
+ | |disjoint_from= | ||
|has_quality= | |has_quality= | ||
+ | |id=UBERON:0000915 | ||
+ | |is_a=UBERON:0009569 ;;UBERON:0011676 | ||
+ | |is_obsolete= | ||
|located_in= | |located_in= | ||
+ | |name=thoracic segment of trunk | ||
+ | |namespace=FANTOM | ||
+ | |obo_creation_date= | ||
|part_of= | |part_of= | ||
+ | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | ||
− | | | + | |subset=uberon_slim |
− | | | + | |synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED [] |
+ | |union_of= | ||
+ | |xref=FMA:259209;;MA:0000022;;SCTID:302551006 | ||
}} | }} |
Latest revision as of 08:10, 12 September 2014
Name: | thoracic segment of trunk | ||
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Namespace: | FANTOM | ||
Definition: | "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] | ||
Xrefs: |
| ||
Synonyms: |
"thorax" RELATED [MA:0000022] "upper body" RELATED [] | ||
Comments: | Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
Alt_id: | UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 | ||
Subset: | uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0009569(subdivision of trunk),UBERON:0011676(subdivision of organism along main body axis) |
---|
Children
part of: | UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000915 (thoracic segment of trunk), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5 | p4@Tbx4 |
1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5 | p4@Tbx4 |
4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30 | p@chr9:20829911..20829920, + |
4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30 | p@chr9:20829911..20829920, + |
1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14 | p1@ENSMUST00000134305 |
1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14 | p1@ENSMUST00000134305 |
1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4 | p6@Tbx4 |
1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4 | p6@Tbx4 |
5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57598716..57598720, - |
5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr11:59457994..59457997, - |
5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr4:138812977..138812992, + |
5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57636003..57636017, - |
5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr4:138812977..138812992, + |
5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr8:94878479..94878503, - |
5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57598716..57598720, - |
5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr8:94878479..94878503, - |
5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57636003..57636017, - |
5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr11:59457994..59457997, - |
1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508 | p9@Nav2 |
1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508 | p9@Nav2 |
2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505 | p@chr12:57633887..57633899, - |
2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505 | p@chr12:57633887..57633899, - |
1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fd | p8@Nkx2-1 |
1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fd | p8@Nkx2-1 |
1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218 | p2@E030019B13Rik |
1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218 | p2@E030019B13Rik |
1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78 | p10@Nebl |
1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78 | p10@Nebl |
1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55 | p9@Nkx2-1 |
1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55 | p9@Nkx2-1 |
1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769 | p3@E030019B13Rik |
1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769 | p3@Trpm6 |
1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769 | p@chr12:57598537..57598547, - |
1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769 | p3@Trpm6 |
1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769 | p@chr12:57598537..57598547, - |
1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769 | p3@E030019B13Rik |
2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39 | p@chr12:57636278..57636289, + |
2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39 | p@chr14:115241755..115241762, - |
2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39 | p@chr14:115241755..115241762, - |
2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39 | p@chr12:57636278..57636289, + |
2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82f | p@chr4:138812999..138813015, + |
2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82f | p@chr4:138812999..138813015, + |
3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666 | p7@Il18r1 |
3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666 | p7@Il18r1 |
6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05 | p3@Sftpb |
6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05 | p3@Sftpb |
6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:164374820..164374835, - |
6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05 | p4@Sftpb |
6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr1:184610062..184610074, + |
6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05 | p4@Sftpb |
6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70921265..70921285, - |
6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:164374820..164374835, - |
6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:66524237..66524246, - |
6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70922576..70922589, - |
6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70921265..70921285, - |
6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr1:184610062..184610074, + |
6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:66524237..66524246, - |
6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70922576..70922589, - |
9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8 | p@chr5:120282691..120282701, + |
9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8 | p@chr5:120282691..120282701, + |
1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08 | p@chr12:57636911..57636924, - |
1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08 | p@chr12:57636911..57636924, - |
3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2c | p4@E030019B13Rik |
3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2c | p4@E030019B13Rik |
1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr14:70922007..70922052, + |
1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr14:70922007..70922052, + |
1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr12:57623172..57623185, - |
1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr12:57623172..57623185, - |
1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340 | p@chr5:28785436..28785450, - |
1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340 | p@chr5:28785436..28785450, - |
1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4d | p@chr14:70922459..70922482, - |
1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4d | p@chr14:70922459..70922482, - |
5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8 | p4@Etv5 |
5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8 | p4@Etv5 |
1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72259797..72259814, + |
1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70923240..70923251, - |
1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70922486..70922510, - |
1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72263977..72263993, + |
1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70922486..70922510, - |
1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60e | p4@Lamp3 |
1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60e | p4@Lamp3 |
1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72259797..72259814, + |
1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60e | p@chr12:57376690..57376716, - |
1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72263977..72263993, + |
1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264418..72264441, + |
1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70923240..70923251, - |
1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264418..72264441, + |
1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264890..72264911, + |
1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264890..72264911, + |
1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60e | p@chr12:57376690..57376716, - |
2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9c | p@chr6:72264609..72264653, - |
2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9c | p@chr6:72264609..72264653, - |
2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0 | p@chr6:129378567..129378573, - |
2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0 | p@chr6:129378567..129378573, - |
3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4 | p16@Pde5a |
3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4 | p16@Pde5a |
5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4 | p7@Nkx2-1 |
5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4 | p7@Nkx2-1 |