Difference between revisions of "UBERON:0000915"
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{{UBERON | {{UBERON | ||
| − | | | + | |alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 |
| − | | | + | |anatomical_img_id=FMA:9576 |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | |comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
| − | |||
| − | |||
| − | |||
|created_by= | |created_by= | ||
| − | | | + | |def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] |
| − | |||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
| + | |disjoint_from= | ||
|has_quality= | |has_quality= | ||
| + | |id=UBERON:0000915 | ||
| + | |is_a=UBERON:0009569 ;;UBERON:0011676 | ||
| + | |is_obsolete= | ||
|located_in= | |located_in= | ||
| + | |name=thoracic segment of trunk | ||
| + | |namespace=FANTOM | ||
| + | |obo_creation_date= | ||
|part_of= | |part_of= | ||
| + | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | ||
| − | | | + | |subset=uberon_slim |
| − | | | + | |synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED [] |
| + | |union_of= | ||
| + | |xref=FMA:259209;;MA:0000022;;SCTID:302551006 | ||
}} | }} | ||
Latest revision as of 08:10, 12 September 2014
| Name: | thoracic segment of trunk | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] | ||
| Xrefs: |
| ||
| Synonyms: |
"thorax" RELATED [MA:0000022] "upper body" RELATED [] | ||
| Comments: | Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
| Alt_id: | UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 | ||
| Subset: | uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0009569(subdivision of trunk),UBERON:0011676(subdivision of organism along main body axis) |
|---|
Children
| part of: | UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000915 (thoracic segment of trunk), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.21e-66 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5 | p4@Tbx4 |
| 1.21e-66 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_fe636fc6e687180fb2d80fae7efb24b5 | p4@Tbx4 |
| 4.71e-66 | FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30 | p@chr9:20829911..20829920, + |
| 4.71e-66 | FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_f6ab1f6bb35b813b88d5d63eb2ee9b30 | p@chr9:20829911..20829920, + |
| 1.06e-62 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14 | p1@ENSMUST00000134305 |
| 1.06e-62 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2e975e11f521e8c0601ab9d3b5208e14 | p1@ENSMUST00000134305 |
| 1.52e-61 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.52e-61 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_58c86d732fe787686e4e8bffa372bca1 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 1.91e-61 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4 | p6@Tbx4 |
| 1.91e-61 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_e2338aee523ffe444367aae068a68fe4 | p6@Tbx4 |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr11:59457994..59457997, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr4:138812977..138812992, + |
| 5.56e-61 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57598716..57598720, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr8:94878479..94878503, - |
| 5.56e-61 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr12:57636003..57636017, - |
| 5.56e-61 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_f3ee3e855a6dc23811f81695e91fa8f4 | p@chr11:59457994..59457997, - |
| 1.35e-60 | FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508 | p9@Nav2 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_9cf0d12f6fbf8dfe440f78c37cb1a508 | p9@Nav2 |
| 2.87e-58 | FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505 | p@chr12:57633887..57633899, - |
| 2.87e-58 | FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c90c3339c6c69fb8676193d805dfb505 | p@chr12:57633887..57633899, - |
| 1.23e-57 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fd | p8@Nkx2-1 |
| 1.23e-57 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_7d305fd7c6fe9fd1a08b4b2b171d72fd | p8@Nkx2-1 |
| 1.37e-57 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218 | p2@E030019B13Rik |
| 1.37e-57 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_4c019bc36825c5a5d858106a03a3d218 | p2@E030019B13Rik |
| 1.53e-57 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78 | p10@Nebl |
| 1.53e-57 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_f1f4b6277f9742280398cdfc6dd7ac78 | p10@Nebl |
| 1.7e-57 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55 | p9@Nkx2-1 |
| 1.7e-57 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_d8f2b0573fca60d2525bc98af64f4b55 | p9@Nkx2-1 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769 | p3@E030019B13Rik |
| 1.79e-56 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_f633d9a2e18a4bd55b7db2df7e873769 | p3@Trpm6 |
| 1.79e-56 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_f633d9a2e18a4bd55b7db2df7e873769 | p@chr12:57598537..57598547, - |
| 1.79e-56 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_f633d9a2e18a4bd55b7db2df7e873769 | p3@E030019B13Rik |
| 2.01e-56 | FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39 | p@chr12:57636278..57636289, + |
| 2.01e-56 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39 | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_c409d3f25876e144f9a89ec2832f6e39 | p@chr14:115241755..115241762, - |
| 2.01e-56 | FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_c409d3f25876e144f9a89ec2832f6e39 | p@chr12:57636278..57636289, + |
| 2.24e-56 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82f | p@chr4:138812999..138813015, + |
| 2.24e-56 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_3524a6a64479f6d66b7796a35403d82f | p@chr4:138812999..138813015, + |
| 3.93e-56 | FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666 | p7@Il18r1 |
| 3.93e-56 | FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_aec89c6c1789b2e49b32e375981a7666 | p7@Il18r1 |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05 | p3@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_09ea7bc94be0a44a275a35b3f8505a05 | p3@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05 | p4@Sftpb |
| 6.2e-56 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_09ea7bc94be0a44a275a35b3f8505a05 | p4@Sftpb |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:164374820..164374835, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70922576..70922589, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70921265..70921285, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr1:184610062..184610074, + |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr2:66524237..66524246, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_09ea7bc94be0a44a275a35b3f8505a05 | p@chr14:70922576..70922589, - |
| 9.42e-56 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8 | p@chr5:120282691..120282701, + |
| 9.42e-56 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_9e8e48ac1dc0313625ebe1e3e8247ba8 | p@chr5:120282691..120282701, + |
| 1.34e-54 | FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08 | p@chr12:57636911..57636924, - |
| 1.34e-54 | FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_5d353484df35e3dd4a003f08aa612f08 | p@chr12:57636911..57636924, - |
| 3.97e-54 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2c | p4@E030019B13Rik |
| 3.97e-54 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_28bdcf871653a7e55bc069bfd5992e2c | p4@E030019B13Rik |
| 1.46e-52 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr14:70922007..70922052, + |
| 1.46e-52 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr12:57623172..57623185, - |
| 1.46e-52 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_394ce1fe7f324ed0cd7506a6a8ca7490 | p@chr12:57623172..57623185, - |
| 1.62e-52 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340 | p@chr5:28785436..28785450, - |
| 1.62e-52 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_8481da85944ecd2793f4e6bc41e0d340 | p@chr5:28785436..28785450, - |
| 1.8e-52 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4d | p@chr14:70922459..70922482, - |
| 1.8e-52 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_79cc91ddba3de2f1fad9428c2ff7ee4d | p@chr14:70922459..70922482, - |
| 5.65e-52 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8 | p4@Etv5 |
| 5.65e-52 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_1ede1bb7a3d0b4a4f39a469c21b0bcb8 | p4@Etv5 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70922486..70922510, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60e | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_a709d95820a810f510806e9a196bc60e | p4@Lamp3 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72259797..72259814, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60e | p@chr12:57376690..57376716, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72263977..72263993, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_a709d95820a810f510806e9a196bc60e | p@chr14:70923240..70923251, - |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264418..72264441, + |
| 1.97e-51 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_a709d95820a810f510806e9a196bc60e | p@chr6:72264890..72264911, + |
| 1.97e-51 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_a709d95820a810f510806e9a196bc60e | p@chr12:57376690..57376716, - |
| 2.21e-51 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9c | p@chr6:72264609..72264653, - |
| 2.21e-51 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_1e06a500c6a76dfb089e9144e3df7f9c | p@chr6:72264609..72264653, - |
| 2.47e-51 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0 | p@chr6:129378567..129378573, - |
| 2.47e-51 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_1876b157eb88e40e63061f9184cffef0 | p@chr6:129378567..129378573, - |
| 3.74e-51 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4 | p16@Pde5a |
| 3.74e-51 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_e1658d19cba8f4bc6e9b976d55cf35e4 | p16@Pde5a |
| 5.44e-51 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4 | p7@Nkx2-1 |
| 5.44e-51 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_7295c9d0c6d468909a247f56d3cfe8b4 | p7@Nkx2-1 |
