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Difference between revisions of "UBERON:0000982"

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|part_of=UBERON:0004770
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string;;UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string
 
|is_obsolete=
 
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|preceded_by=
 
}}
 
}}

Revision as of 04:27, 27 June 2012

Name:skeletal joint
Definition:"Anatomical cluster that consists of two or more adjacent skeletal structures, which may be interconnected by various types of tissue[VSAO]." [VSAO:0000101, Wikipedia:Joint]
Xrefs:
links:

AEO:0000182
BTO:0001686
EFO:0000948
EMAPA:19204
FMA:7490
GAID:102
galen:Joint
MA:0000319
MAT:0000188
MESH:A.02.835.583
MIAA:0000188
ncithesaurus:Joint
OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
RETIRED_EHDAA2:0003182
SCTID:302536002
TAO:0000367
VHOG:0001276
VSAO:0000101
XAO:0000171

ZFA:0001596
Synonyms: "articular joint" RELATED [BTO:0001686]
"articulation" BROAD [VSAO:0000101]
"joint" BROAD [FMA:7490, VSAO:0000101]
Alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004905(articulation)
disjoint_from:UBERON:0001474(bone element)
union_of:UBERON:0002217(synovial joint),UBERON:0011134(nonsynovial joint)
part_of:UBERON:0004770(articular system)



Children

is a:UBERON:0002217 (synovial joint),UBERON:0003657 (limb joint),UBERON:0011134 (nonsynovial joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000982 (skeletal joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.05e-102FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692bep@chr3:174737010..174737023, +
5.05e-102FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_b1ecf261b483c6257460cdb5e61692bep@chr3:174737010..174737023, +
6.68e-88FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5p4@PAX1
6.68e-88FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_954cbe2f4583cab6ca97335e6355beb5p4@PAX1
5.7e-81FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0fp15@SNED1
5.7e-81FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3a6d6fd927550657ed2cf47799211a0fp15@SNED1
3.87e-62FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9adp@chr5:30104176..30104187, -
3.87e-62FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_16b8648578283daf3e4c9dda5487b9adp@chr5:30104176..30104187, -
5.39e-52FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8p1@ENST00000436845
5.39e-52FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_27390d93e0ae3513d383cfc7c3e635a8p1@ENST00000436845
5.25e-50FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349p6@SIX4
5.25e-50FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_a064797364a574ba49f27ccf254ba349p6@SIX4
1.71e-49FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8cp4@NKX3-2
1.71e-49FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_66eadedaa2566d6970c24e73df81bb8cp4@NKX3-2
4.01e-47FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672p@chr5:140887761..140887777, +
4.01e-47FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_6fcebd35458a11de934ecb03fbb75672p@chr5:140887761..140887777, +
3.73e-45FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4p@chr2:242009429..242009432, +
3.73e-45FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_3ae92f11804214545e7d59030247fed4p@chr2:242009429..242009432, +
5.04e-45FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1p@chr9:114135497..114135526, -
5.04e-45FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_b3e0fd9188c1f214584e0fa4f1c7a0a1p@chr9:114135497..114135526, -
1.45e-44FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366p@chr2:241897125..241897142, -
1.45e-44FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_510fcef1366d329167042ac2d30aa366p@chr2:241897125..241897142, -
5.55e-44FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0p@chr3:80727046..80727051, -
5.55e-44FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_7cb74435875f0979b11e68c1e10189b0p@chr3:80727046..80727051, -
5.66e-42FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754p@chr7:100202784..100202796, -
5.66e-42FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_701720b73d744b2d3f0853e554fb5754p@chr7:100202784..100202796, -
9.63e-42FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbdp20@CAPZB
9.63e-42FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_3482ce59ea7e0ef30e61dd09f0c58cbdp20@CAPZB
2.13e-39FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bcp@chr1:19778678..19778689, -
2.13e-39FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_57a4c69b200305e1cd70b23f2ad439bcp@chr1:19778678..19778689, -
1.04e-37FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacfp@chr2:241897189..241897221, -
1.04e-37FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_47c9a74722964c8683496907625bdacfp@chr2:241897189..241897221, -
1.51e-37FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4p22@SNED1
1.51e-37FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_8475d26d970679fc109de4870a5a58d4p22@SNED1
3.4e-36FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5p1@uc010aki.1
3.4e-36FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_bd256bfad7ee90cc9618e352df4555c5p1@uc010aki.1
6.5e-34FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681ep31@SEMA3C
6.5e-34FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_7ec5d95a9316539fcea2f0e6ed75681ep31@SEMA3C
9.08e-34FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5p3@uc010aki.1
9.08e-34FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_ef35dd31c71fd7b20f2a46f5220264d5p3@uc010aki.1
1.15e-32FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083cp3@PAX1
1.15e-32FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_c6717be6bc0c3c41cc425ef5433c083cp3@PAX1
1.77e-32FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25dap@chr10:81923378..81923389, -
1.77e-32FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b3319de5309e55dbba91e36b0a8b25dap@chr10:81923378..81923389, -
2.19e-32FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdbp@chr2:12248310..12248334, -
2.19e-32FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_dfd994c339fe899a84aa61e00d6fbcdbp@chr2:12248310..12248334, -
8.44e-32FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564p19@HDAC9
8.44e-32FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_97d0f3b2af38cf04b5a1669d02f67564p19@HDAC9
3.34e-31FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7ep5@WISP2
3.34e-31FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_95a7e7bab68d711268570331b1700d7ep5@WISP2
1.1e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341p@chr7:158224707..158224729, -
1.1e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_25a00504750ff441e16444a290823341p@chr7:158224707..158224729, -
4.93e-30FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0p@chr1:65888177..65888194, +
4.93e-30FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_1c45ffec85a00cf30068ae796e5559c0p@chr1:65888177..65888194, +
1.3e-29FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366p5@SNED1
1.3e-29FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_4ba210b1c2eb552e30ea71cd43d4c366p5@SNED1
6.39e-29FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08p@chr17:38613285..38613298, -
6.39e-29FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_ccb8b1d4b4efe981a8712c45fab8da08p@chr17:38613285..38613298, -
6.71e-29FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660ep34@LPAR1
6.71e-29FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_d2d124841fc83868f8ec5cd24a2c660ep34@LPAR1
1.23e-28FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95p3@NKX3-2
1.23e-28FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_5c8403bef8ac1b1d7b095c65a1097c95p3@NKX3-2
1.72e-28FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880p6@WISP2
1.72e-28FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_9755f19284a873f84fa37a6b47130880p6@WISP2
1.13e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227p1@MGC27382
1.13e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_1b3082048b573a26dcd0d7ab0b091227p1@MGC27382
3.37e-27FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcdp18@HDAC9
3.37e-27FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_fa9b7b64171dcec5b717d3de4e352bcdp18@HDAC9
9.5e-27FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2p@chr8:25337491..25337504, +
9.5e-27FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_d0b54eb3c8ed6142b2a46aa604db10a2p@chr8:25337491..25337504, +
2.17e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25dfp@chr14:61113228..61113233, -
2.17e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_e47e486b3e6360ee7e09add98eab25dfp@chr14:61113228..61113233, -
5.22e-26FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134667..172134711, +
5.22e-26FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134755..172134764, +
5.22e-26FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr2:181751144..181751146, +
5.22e-26FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr9:33028063..33028067, -
5.22e-26FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr13:24914614..24914622, -
5.22e-26FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134736..172134739, +
5.22e-26FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7ap9@SKOR1
5.22e-26FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7ap1@ENST00000517363
5.22e-26FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr12:130786785..130786827, -
5.22e-26FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134755..172134764, +
5.22e-26FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr2:181751144..181751146, +
5.22e-26FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134667..172134711, +
5.22e-26FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_ecbc0d75eaf45575b2714e00d4874f7ap9@SKOR1
5.22e-26FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr13:24914614..24914622, -
5.22e-26FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr9:33028063..33028067, -
5.22e-26FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_ecbc0d75eaf45575b2714e00d4874f7ap@chr1:172134736..172134739, +
5.22e-26FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_ecbc0d75eaf45575b2714e00d4874f7ap1@ENST00000517363
5.22e-26FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_ecbc0d75eaf45575b2714e00d4874f7ap@chr12:130786785..130786827, -
8.65e-26FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbcp5@PTGFR
8.65e-26FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbcp@chr18:22150956..22150983, +
8.65e-26FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_1198995c9191029adea2359747dc2cbcp5@PTGFR
8.65e-26FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_1198995c9191029adea2359747dc2cbcp@chr18:22150956..22150983, +
9.05e-26FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fdp7@GMDS
9.05e-26FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_13fee1f9cf825426ff98a937d49d53fdp7@GMDS
1.44e-25FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfep42@LPAR1
1.44e-25FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_8aef5617c783673d961017fc8baebdfep42@LPAR1
1.56e-25FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00p@chr5:17743903..17743914, +
1.56e-25FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_74496285239d2ae33f689d48d05eea00p@chr5:17743903..17743914, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.