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UBERON:0001601: Difference between revisions

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|namespace=
|namespace=
|def="Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
|def="Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
|xref=BTO:0001579;;EFO:0001921;;EHDAA:5729;;EHDAA2:0000482;;EMAPA:18234;;FMA:49033;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg;;MA:0001271;;SCTID:181150000;;VHOG:0000549;;ZFA:0000511
|xref=AAO:0010028;;BTO:0001579;;EFO:0001921;;EHDAA2:0000482;;EHDAA:5729;;EMAPA:18234;;FMA:49033;;http://upload.wikimedia.org/wikipedia/commons/6/61/MRI_of_human_eye.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg;;MA:0001271;;SCTID:181150000;;TAO:0000511;;VHOG:0000549;;ZFA:0000511
|is_a=UBERON:0000078;;UBERON:0004277
|is_a=UBERON:0004277;;UBERON:0010313
|synonym="extra-ocular skeletal muscle" EXACT [];;"extraocular muscle" EXACT [];;"extraocular musculature" EXACT [ZFA:0000511];;"extraocular skeletal muscle" EXACT [MA:0001271];;"extrinsic eye muscle" EXACT [Obol:automatic];;"extrinsic muscle of eyeball" EXACT [];;"extrinsic ocular muscle" EXACT [EHDAA2:0000482]
|synonym="extra-ocular skeletal muscle" EXACT [];;"extraocular muscle" EXACT [FMA:49033];;"extraocular musculature" EXACT [ZFA:0000511];;"extraocular skeletal muscle" EXACT [MA:0001271];;"extrinsic eye muscle" EXACT [Obol:automatic];;"extrinsic muscle of eyeball" EXACT [FMA:49033];;"extrinsic ocular muscle" EXACT [EHDAA2:0000482];;"musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles]
|comment=TODO - resolve discrepancies in which muscles are considered extra-ocular
|comment=AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles.
|alt_id=UBERON:0006229;;UBERON:FMA_49033-MA_0000271
|alt_id=UBERON:0006229;;UBERON:FMA_49033-MA_0000271
|disjoint_from=
|disjoint_from=
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|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim;;vertebrate_core
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0005280;;UBERON:0006230
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0003269
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:59, 26 June 2012

Name:extra-ocular muscle
Definition:"Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
Xrefs:
links:

AAO:0010028
BTO:0001579
EFO:0001921
EHDAA2:0000482
EHDAA:5729
EMAPA:18234
FMA:49033
[1]
[2]
MA:0001271
SCTID:181150000
TAO:0000511
VHOG:0000549

ZFA:0000511
Synonyms: "extra-ocular skeletal muscle" EXACT []
"extraocular muscle" EXACT [FMA:49033]
"extraocular musculature" EXACT [ZFA:0000511]
"extraocular skeletal muscle" EXACT [MA:0001271]
"extrinsic eye muscle" EXACT [Obol:automatic]
"extrinsic muscle of eyeball" EXACT [FMA:49033]
"extrinsic ocular muscle" EXACT [EHDAA2:0000482]
"musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles]
Comments:AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles.
Alt_id: UBERON:0006229
UBERON:FMA_49033-MA_0000271
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004277(eye muscle),UBERON:0010313(neural crest-derived structure)



Children

is a:UBERON:0006531 (oculomotor muscle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001601 (extra-ocular muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.