Personal tools

UBERON:0001601

From FANTOM5_SSTAR

Revision as of 11:04, 12 September 2014 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:extra-ocular muscle
Definition:"Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extraocular_muscles]
Xrefs:
links:

AAO:0010028
BTO:0001579
EFO:0001921
EHDAA2:0000482
EHDAA:5729
EMAPA:18234
FMA:49033
[1]
[2]
MA:0001271
SCTID:181150000
TAO:0000511
VHOG:0000549

ZFA:0000511
Synonyms: "extra-ocular skeletal muscle" EXACT []
"extraocular muscle" EXACT [FMA:49033]
"extraocular musculature" EXACT [ZFA:0000511]
"extraocular skeletal muscle" EXACT [MA:0001271]
"extrinsic eye muscle" EXACT [Obol:automatic]
"extrinsic muscle of eyeball" EXACT [FMA:49033]
"extrinsic ocular muscle" EXACT [EHDAA2:0000482]
"musculi externi bulbi oculi" RELATED LATIN [Wikipedia:Extraocular_muscles]
Comments:AO notes: BTO and MA consider this part of the eye; we follow them here (inferred from skeletal muscle). Not clear if omission from FMA is deliberate. Editor notes: todo - resolve discrepancies in which muscles are considered extra-ocular. Taxon notes: Mammals have 7 extra-ocular muscles, but humans lack the M. retractor bulbi. Note in ZFA this is the set of muscles.
Alt_id: UBERON:0006229
UBERON:FMA_49033-MA_0000271
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0004277(eye muscle),UBERON:0010313(neural crest-derived structure)
develops_from:UBERON:0006230(extrinsic ocular pre-muscle mass)
part_of:UBERON:0003269(skeletal muscle tissue of eye)



Children

is a:UBERON:0006531 (oculomotor muscle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001601 (extra-ocular muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results










Property "Property value" (as page type) with input value "UBPROP:0000001 "Muscles surrounding the eye (bulbus oculi) and having an effect on eye movements.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.