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Difference between revisions of "UBERON:0001638"

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{{UBERON
 
{{UBERON
−
|id=UBERON:0001638
+
|alt_id=UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
−
|name=vein
+
|anatomical_img_id=FMA:50723
−
|namespace=
 
−
|def="Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
 
−
|xref=AAO:0010212;;AEO:0000209;;BTO:0000234;;EFO:0000816;;EHDAA2:0003254;;EV:0100031;;FMA:50723;;GAID:492;;galen:Vein;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png;;MA:0000067;;MAT:0000037;;MESH:A.07.231.908;;MIAA:0000037;;ncithesaurus:Vein;;OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA;;SCTID:181367001;;TAO:0000082;;VHOG:0001252;;XAO:0000115;;ZFA:0000082
 
−
|is_a=UBERON:0003920
 
−
|synonym="venous subtree" BROAD [];;"venous tree organ part" EXACT [];;"venous vessel" BROAD []
 
 
|comment=TODO - check with MA - vein vs venous blood vessel
 
|comment=TODO - check with MA - vein vs venous blood vessel
−
|alt_id=UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
 
−
|disjoint_from=
 
−
|union_of=
 
 
|created_by=
 
|created_by=
−
|obo_creation_date=
+
|def="Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
−
|subset=uberon_slim;;vertebrate_core
 
−
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0001638
 +
|is_a=UBERON:0003920
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=vein
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
−
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
−
|is_obsolete=
 
 
|preceded_by=
 
|preceded_by=
 +
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string
 +
|subset=uberon_slim;;vertebrate_core
 +
|synonym="vena" RELATED LATIN [Wikipedia:Vein];;"venous subtree" BROAD [];;"venous tree organ part" EXACT [];;"venous vessel" BROAD []
 +
|union_of=
 +
|xref=AAO:0010212;;AEO:0000209;;BTO:0000234;;EFO:0000816;;EHDAA2:0003254;;EV:0100031;;FMA:50723;;GAID:492;;galen:Vein;;http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png;;MA:0000067;;MAT:0000037;;MESH:A.07.231.908;;MIAA:0000037;;ncithesaurus:Vein;;OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA;;SCTID:181367001;;TAO:0000082;;VHOG:0001252;;XAO:0000115;;ZFA:0000082
 
}}
 
}}

Latest revision as of 08:19, 12 September 2014

Name:vein
Namespace:FANTOM
Definition:"Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
Xrefs:
links:

AAO:0010212
AEO:0000209
BTO:0000234
EFO:0000816
EHDAA2:0003254
EV:0100031
FMA:50723
GAID:492
galen:Vein
[1]
[ 200px-Venous_system_en.svg.png 200px-Venous_system_en.svg.png]
MA:0000067
MAT:0000037
MESH:A.07.231.908
MIAA:0000037
ncithesaurus:Vein
OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA
SCTID:181367001
TAO:0000082
VHOG:0001252
XAO:0000115

ZFA:0000082
Synonyms: "vena" RELATED LATIN [Wikipedia:Vein]
"venous subtree" BROAD []
"venous tree organ part" EXACT []
"venous vessel" BROAD []
Comments:TODO - check with MA - vein vs venous blood vessel
Alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0003920(venous blood vessel)



Children

is a:UBERON:0002066 (umbilical vein)
derives from:FF:0010191 (human vein - adult sample)
part of:CL:0002543 (vein endothelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001638 (vein), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
4.63e-79FFCP PHASE1:Hg19::chr19:7861475..7861491,+#_bcd1311704e3091c09c9d9d8acfdcdf5p@chr19:7861475..7861491, +
4.63e-79FFCP PHASE2:Hg19::chr19:7861475..7861491,+#_bcd1311704e3091c09c9d9d8acfdcdf5p@chr19:7861475..7861491, +
3.75e-66FFCP PHASE1:Hg19::chr5:120649811..120649848,+#_17f60debf9833d7f2858950cbd33eb0dp@chr5:120649811..120649848, +
3.75e-66FFCP PHASE2:Hg19::chr5:120649811..120649848,+#_17f60debf9833d7f2858950cbd33eb0dp@chr5:120649811..120649848, +
5.48e-53FFCP PHASE2:Hg19::chr9:35754222..35754237,-#_e187acce7750ab70eefaac47665423c3p3@MSMP
5.48e-53FFCP PHASE1:Hg19::chr9:35754222..35754237,-#_e187acce7750ab70eefaac47665423c3p3@MSMP
6.77e-49FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_bd77980559a9f9ba8187bf28ba3772d1p@chr9:139563124..139563129, +
6.77e-49FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_bd77980559a9f9ba8187bf28ba3772d1p@chr9:139563124..139563129, +
8.62e-47FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_8b8f03dd4ea8b2599500932a0a50fd7fp7@WDFY4
8.62e-47FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_8b8f03dd4ea8b2599500932a0a50fd7fp7@WDFY4
9.75e-45FFCP PHASE1:Hg19::chr1:78512168..78512171,-#_cc943d47d992ea63f07b2986456c32d5p@chr1:78512168..78512171, -
9.75e-45FFCP PHASE2:Hg19::chr1:78512168..78512171,-#_cc943d47d992ea63f07b2986456c32d5p@chr1:78512168..78512171, -
3.18e-44FFCP PHASE1:Hg19::chr10:94590997..94591006,+#_5b1d0894c19f5bf3459a33a0a48417c7p11@EXOC6
3.18e-44FFCP PHASE2:Hg19::chr10:94590997..94591006,+#_5b1d0894c19f5bf3459a33a0a48417c7p11@EXOC6
4.77e-40FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_ac5c5ed69d2fc3f781952d78e91462dbp6@WDFY4
4.77e-40FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_ac5c5ed69d2fc3f781952d78e91462dbp6@WDFY4
1.49e-39FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_c73416ef58468e859074d3c57875beb1p@chr1:61415107..61415136, -
1.49e-39FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_c73416ef58468e859074d3c57875beb1p@chr1:61415107..61415136, -
2.39e-39FFCP PHASE2:Hg19::chr12:10794718..10794741,+#_9cca15159dc29f58b36d45059bece165p@chr12:10794718..10794741, +
2.39e-39FFCP PHASE1:Hg19::chr12:10794718..10794741,+#_9cca15159dc29f58b36d45059bece165+, p@chr12:10794718..10794741
3.02e-39FFCP PHASE2:Hg19::chr10:82173423..82173439,+#_e081e5954bc0f33889508b1e37cd5facp5@FAM213A
3.02e-39FFCP PHASE1:Hg19::chr10:82173423..82173439,+#_e081e5954bc0f33889508b1e37cd5facp5@FAM213A
3.51e-38FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_b46bb77cb303c757513ab8e9c9ab9b7bp5@PARP12
3.51e-38FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_b46bb77cb303c757513ab8e9c9ab9b7bp5@PARP12
1.04e-37FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_2e45a5e07a5cfc69bfca0caf7914ef5cp11@MANSC1
1.04e-37FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_2e45a5e07a5cfc69bfca0caf7914ef5cp11@MANSC1
1.43e-37FFCP PHASE1:Hg19::chr9:139559213..139559241,+#_01b4ac5fb303348deb7bf6192bc28b3fp5@EGFL7
1.43e-37FFCP PHASE2:Hg19::chr9:139559213..139559241,+#_01b4ac5fb303348deb7bf6192bc28b3fp5@EGFL7
6.69e-36FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_14ebb54bfa515ba852a42b87096098f6p@chr1:172926077..172926120, -
6.69e-36FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_14ebb54bfa515ba852a42b87096098f6p@chr1:172926077..172926120, -
9.57e-36FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_3ce49b3e81af73d743f7b24b1e021f0dp@chr6:11607864..11607875, +
9.57e-36FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_3ce49b3e81af73d743f7b24b1e021f0dp@chr6:11607864..11607875, +
3.67e-35FFCP PHASE2:Hg19::chr7:106720036..106720059,-#_da2101c1804f7a0fd41b6e781e5c90b4p@chr7:106720036..106720059, -
3.67e-35FFCP PHASE1:Hg19::chr7:106720036..106720059,-#_da2101c1804f7a0fd41b6e781e5c90b4p@chr7:106720036..106720059, -
1.05e-34FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_3098f66b699753ca0ec9ba27c2f54cb2p@chr6:78171774..78171792, +
1.05e-34FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_3098f66b699753ca0ec9ba27c2f54cb2p@chr6:78171774..78171792, +
8.87e-34FFCP PHASE1:Hg19::chr1:78510648..78510661,+#_99eae0546c4467804812b8bb0f5965ecp7@GIPC2
8.87e-34FFCP PHASE2:Hg19::chr1:78510648..78510661,+#_99eae0546c4467804812b8bb0f5965ecp7@GIPC2
8.87e-34FFCP PHASE2:Hg19::chr10:94590950..94590955,+#_99eae0546c4467804812b8bb0f5965ecp13@EXOC6
8.87e-34FFCP PHASE1:Hg19::chr10:94590950..94590955,+#_99eae0546c4467804812b8bb0f5965ecp13@EXOC6
1.55e-33FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_f2d72e494705b33b86d0815653ce82a8p12@KSR2
1.55e-33FFCP PHASE1:Hg19::chr2:72789511..72789554,-#_f2d72e494705b33b86d0815653ce82a8p@chr2:72789511..72789554, -
1.55e-33FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_f2d72e494705b33b86d0815653ce82a8p12@KSR2
1.55e-33FFCP PHASE2:Hg19::chr2:72789511..72789554,-#_f2d72e494705b33b86d0815653ce82a8-, p@chr2:72789511..72789554
1.73e-33FFCP PHASE2:Hg19::chr12:105962745..105962748,+#_617e81524438d9aad8eea72214de69a3p@chr12:105962745..105962748, +
1.73e-33FFCP PHASE1:Hg19::chr12:105962745..105962748,+#_617e81524438d9aad8eea72214de69a3p@chr12:105962745..105962748, +
3.04e-33FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_6402eb1dfe8f2a428fbfe860932e912dp@chr3:43538305..43538325, -
3.04e-33FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_6402eb1dfe8f2a428fbfe860932e912dp@chr3:43538305..43538325, -
2.06e-32FFCP PHASE1:Hg19::chr1:186946611..186946622,+#_e43403b23a9f7ceaaf0c3073b4a1eb1cp@chr1:186946611..186946622, +
2.06e-32FFCP PHASE2:Hg19::chr1:186946611..186946622,+#_e43403b23a9f7ceaaf0c3073b4a1eb1cp@chr1:186946611..186946622, +
2.62e-32FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_4db1f3c247233752a0f9f50b56cdea6cp12@PARP12
2.62e-32FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_4db1f3c247233752a0f9f50b56cdea6cp12@PARP12
4.23e-31FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_c8a152d050bbdec96449b8091adf9c7dp@chr6:78171746..78171769, +
4.23e-31FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_c8a152d050bbdec96449b8091adf9c7dp@chr6:78171746..78171769, +
4.39e-31FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_12ea5f3428a0abf5a3461ebccd90e3b5p@chr1:22264210..22264241, +
4.39e-31FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_12ea5f3428a0abf5a3461ebccd90e3b5p@chr1:22264210..22264241, +
7.0e-31FFCP PHASE1:Hg19::chr18:22932208..22932219,-#_0f60d8d294585fe1a21fb2d1607af098p6@ZNF521
7.0e-31FFCP PHASE2:Hg19::chr18:22932208..22932219,-#_0f60d8d294585fe1a21fb2d1607af098p6@ZNF521
3.09e-30FFCP PHASE2:Hg19::chr4:162563953..162563962,-#_f8641936d7a38b2ae8d65d64ac7560d2p@chr4:162563953..162563962, -
3.09e-30FFCP PHASE1:Hg19::chr4:162563953..162563962,-#_f8641936d7a38b2ae8d65d64ac7560d2p@chr4:162563953..162563962, -
7.85e-30FFCP PHASE2:Hg19::chr5:71853090..71853107,+#_27f5a2bd012987dc130e6a3b0b8e963bp@chr5:71853090..71853107, +
7.85e-30FFCP PHASE1:Hg19::chr5:71853090..71853107,+#_27f5a2bd012987dc130e6a3b0b8e963bp@chr5:71853090..71853107, +
8.25e-30FFCP PHASE1:Hg19::chr22:50331023..50331030,+#_23b076c9b04496d89eeefab0cf5584f4p@chr22:50331023..50331030, +
8.25e-30FFCP PHASE2:Hg19::chr22:50331023..50331030,+#_23b076c9b04496d89eeefab0cf5584f4p@chr22:50331023..50331030, +
1.15e-29FFCP PHASE1:Hg19::chr12:105863627..105863633,+#_0ef46d7f8031022fc5ee2e198ebdb94bp@chr12:105863627..105863633, +
1.15e-29FFCP PHASE2:Hg19::chr12:105863627..105863633,+#_0ef46d7f8031022fc5ee2e198ebdb94bp@chr12:105863627..105863633, +
1.66e-29FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_0ded93e5813293beda1f0e335e403cb2p@chr10:99655692..99655725, -
1.66e-29FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_0ded93e5813293beda1f0e335e403cb2p@chr10:99655692..99655725, -
3.22e-29FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_4446d94f1e9e6c803ee5275d554db915p@chr13:75941109..75941132, -
3.22e-29FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_4446d94f1e9e6c803ee5275d554db915p@chr13:75941109..75941132, -
6.2e-29FFCP PHASE1:Hg19::chr1:78511901..78511912,+#_a54412825ef9ddbccc483381e06f99e7p6@GIPC2
6.2e-29FFCP PHASE2:Hg19::chr1:78511901..78511912,+#_a54412825ef9ddbccc483381e06f99e7p6@GIPC2
7.5e-29FFCP PHASE2:Hg19::chr1:186946659..186946664,+#_5dcbad4aec1a3ba7a1198bb0b3274dcdp@chr1:186946659..186946664, +
7.5e-29FFCP PHASE1:Hg19::chr1:186946659..186946664,+#_5dcbad4aec1a3ba7a1198bb0b3274dcdp@chr1:186946659..186946664, +
7.78e-29FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_bfb8107820d7fd6e7a60a19bea951503p1@MIR216A
7.78e-29FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_bfb8107820d7fd6e7a60a19bea951503p1@MIR216A
9.25e-29FFCP PHASE2:Hg19::chr21:39869867..39869880,-#_ea134398f9a18e68430f7b0a73f22046p@chr21:39869867..39869880, -
9.25e-29FFCP PHASE1:Hg19::chr21:39869867..39869880,-#_ea134398f9a18e68430f7b0a73f22046p@chr21:39869867..39869880, -
9.98e-29FFCP PHASE1:Hg19::chr11:59875891..59875903,-#_bbe1b53251c88c7e73ebbadf41abffefp@chr11:59875891..59875903, -
9.98e-29FFCP PHASE2:Hg19::chr11:59875891..59875903,-#_bbe1b53251c88c7e73ebbadf41abffefp@chr11:59875891..59875903, -
3.37e-28FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_d17208321a19d709fbfebe479b6431d2p@chr12:105863705..105863718, +
3.37e-28FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_d17208321a19d709fbfebe479b6431d2p@chr12:105863705..105863718, +
4.57e-28FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_d24a45218db606308922085a18d0e389p10@PTPRB
4.57e-28FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_d24a45218db606308922085a18d0e389p10@PTPRB
4.79e-28FFCP PHASE1:Hg19::chr19:47220191..47220198,-#_ac7a9f3842ad6605430adfdebdae47f2p14@PRKD2
4.79e-28FFCP PHASE2:Hg19::chr19:47220191..47220198,-#_ac7a9f3842ad6605430adfdebdae47f2p14@PRKD2
1.4e-27FFCP PHASE2:Hg19::chr6:142622846..142622853,+#_4e03c3304d9742ed8f27fab07ba0315ep12@GPR126
1.4e-27FFCP PHASE1:Hg19::chr6:142622846..142622853,+#_4e03c3304d9742ed8f27fab07ba0315ep12@GPR126
2.78e-27FFCP PHASE1:Hg19::chr12:6232421..6232447,-#_9952470968cee421b2ff1bf9f7e7e374p8@VWF
2.78e-27FFCP PHASE2:Hg19::chr12:6232421..6232447,-#_9952470968cee421b2ff1bf9f7e7e374p8@VWF
6.96e-27FFCP PHASE2:Hg19::chr13:32838839..32838850,+#_d0cd9ee6f3d20e81097549ce3380ee4ap20@FRY
6.96e-27FFCP PHASE1:Hg19::chr13:32838839..32838850,+#_d0cd9ee6f3d20e81097549ce3380ee4ap20@FRY
1.14e-26FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_db966f00dd5c36b7fc55f1d1524a55fdp1@ENST00000513158
1.14e-26FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_db966f00dd5c36b7fc55f1d1524a55fdp1@ENST00000513158
1.47e-26FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_14bcf57615ffc7a01272b9fd71ba9436p@chr18:33046982..33046991, -
1.47e-26FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_14bcf57615ffc7a01272b9fd71ba9436p@chr18:33046982..33046991, -
1.93e-26FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_956bf2d1590b0645d18ab7e85c9c149fp@chr12:105863636..105863650, +
1.93e-26FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_956bf2d1590b0645d18ab7e85c9c149fp@chr12:105863636..105863650, +
6.75e-26FFCP PHASE2:Hg19::chr1:2485709..2485728,+#_a94c9b5b3a643967044ca5cc2950401cp@chr1:2485709..2485728, +
6.75e-26FFCP PHASE1:Hg19::chr1:2485709..2485728,+#_a94c9b5b3a643967044ca5cc2950401cp@chr1:2485709..2485728, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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