Personal tools

UBERON:0001694: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001694
|alt_id=UBERON:FMA_52871-MA_0001477
|name=petrous part of temporal bone
|namespace=
|def="The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
|xref=EHDAA2:0001452;;EMAPA:17683;;FMA:52871;;GAID:234;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png;;MA:0001477;;MESH:A.02.835.232.781.885.681;;SCTID:361733004
|is_a=UBERON:0000064;;UBERON:0004120
|synonym="pars petrosa (os temporale)" EXACT [];;"petromastoid part of temporal bone" EXACT [];;"petrosal bone" EXACT [];;"petrous bone" EXACT [];;"temporal bone petrous part" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_52871-MA_0001477
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001694
|is_a=UBERON:0004120 ;;UBERON:0005913 ;;UBERON:0010313
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001678
|name=petrous part of temporal bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001678;;UBERON:0002517
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="pars petrosa (os temporale)" EXACT [FMA:52871];;"pars petrosa ossis temporalis" EXACT [];;"petromastoid part of temporal bone" EXACT [FMA:52871];;"petrosal bone" EXACT [FMA:52871];;"petrous bone" EXACT [FMA:52871];;"temporal bone petrous part" EXACT []
|union_of=
|xref=EHDAA2:0001452;;EMAPA:17683;;FMA:52871;;GAID:234;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png;;MA:0001477;;MESH:A.02.835.232.781.885.681;;ncithesaurus:Ciliary_Process;;SCTID:361733004
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:petrous part of temporal bone
Namespace:FANTOM
Definition:"The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
Xrefs:
links:

EHDAA2:0001452
EMAPA:17683
FMA:52871
GAID:234
[ 200px-Gray137.png 200px-Gray137.png]
MA:0001477
MESH:A.02.835.232.781.885.681
ncithesaurus:Ciliary_Process

SCTID:361733004
Synonyms: "pars petrosa (os temporale)" EXACT [FMA:52871]
"pars petrosa ossis temporalis" EXACT []
"petromastoid part of temporal bone" EXACT [FMA:52871]
"petrosal bone" EXACT [FMA:52871]
"petrous bone" EXACT [FMA:52871]
"temporal bone petrous part" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52871-MA_0001477
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005913(zone of bone organ),UBERON:0010313(neural crest-derived structure)
part_of:UBERON:0001678(temporal bone),UBERON:0002517(basicranium)



Children

part of:UBERON:0001839 (bony labyrinth),UBERON:0004637 (otic capsule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001694 (petrous part of temporal bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_656ecb1cd01b0507b1ed7014a1c9b8c5p@chr11:94371127..94371139, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001694&oldid=3277265"