UBERON:0001782
From FANTOM5_SSTAR
Name: | pigmented layer of retina | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] | ||
Xrefs: |
| ||
Synonyms: |
"epithelium, retinal pigment" RELATED [BTO:0001177] "outer pigmented layer of retina" EXACT [] "pigment epithelium of retina" EXACT [] "pigmented epithelium" RELATED [] "pigmented retina" RELATED [] "pigmented retinal epithelium" EXACT [] "PRE" RELATED [] "retinal pigment epithelium" EXACT [MP:0005201, Wikipedia:Retinal_pigment_epithelium] "retinal pigmented epithelium" EXACT [ZFA:0000144] "RPE" RELATED [] "stratum pigmentosa retinae, p. pigmentosa retinae" RELATED LATIN [Wikipedia:Retinal_pigment_epithelium] "stratum pigmentosum (retina)" EXACT [] | ||
Comments: | editor note - we follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers | ||
Alt_id: | UBERON:FMA_58627-MA_0000279-ZFA_0000144 | ||
Subset: |
uberon_slim vertebrate_core |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0001781(layer of retina),UBERON:0015808(eye epithelium) |
---|---|
develops_from: | UBERON:0005424(presumptive retinal pigmented epithelium) |
Children
part of: | CL:0002586 (retinal pigment epithelial cell) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001782 (pigmented layer of retina), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
2.79e-195 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_9f7dbf71f3f059a0b649bc64883f1acf | p@chr1:147150847..147150854, - |
2.79e-195 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_9f7dbf71f3f059a0b649bc64883f1acf | p@chr1:147150847..147150854, - |
3.27e-147 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_49fdb21af4217d755cf58630b9af4de8 | p2@SERPINE3 |
3.27e-147 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_49fdb21af4217d755cf58630b9af4de8 | p2@SERPINE3 |
5.41e-147 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_cfb12de3bf771a66d1f6bac56c743447 | p@chr13:99135322..99135327, - |
5.41e-147 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_cfb12de3bf771a66d1f6bac56c743447 | p@chr13:99135322..99135327, - |
8.98e-131 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_18709429f3383a3d05e54b02e1c6a4b8 | p@chr13:51913893..51913901, + |
8.98e-131 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_18709429f3383a3d05e54b02e1c6a4b8 | p@chr13:51913893..51913901, + |
3.48e-118 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_c0f14d5c475472a051b78a26ec829852 | p@chr11:109990513..109990520, - |
3.48e-118 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_c0f14d5c475472a051b78a26ec829852 | p@chr11:109990513..109990520, - |
1.16e-117 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_631d53ddc1285555b696a2d0cfd7a00b | p@chr5:70308745..70308754, - |
1.16e-117 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_631d53ddc1285555b696a2d0cfd7a00b | p@chr5:70308745..70308754, - |
7.95e-99 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_d2747888d77ce46c3775f0bd1488c9c9 | p2@C11orf9 |
7.95e-99 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_d2747888d77ce46c3775f0bd1488c9c9 | p2@C11orf9 |
2.17e-98 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_2eba63f9e0336435c31f0a531b38ac42 | p@chr2:235591306..235591328, + |
2.17e-98 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_2eba63f9e0336435c31f0a531b38ac42 | p@chr2:235591306..235591328, + |
6.24e-88 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_d145b750f5c88c6cb57128ae810aa56f | p9@C11orf9 |
6.24e-88 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_d145b750f5c88c6cb57128ae810aa56f | p9@C11orf9 |
9.74e-88 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_df552b259893dd7ba36ce8fe6b1f3070 | p11@CRISPLD1 |
9.74e-88 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_df552b259893dd7ba36ce8fe6b1f3070 | p11@CRISPLD1 |
1.52e-87 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_dc4ba13c7b3a08b99b70a00e330b2456 | p5@ENST00000437916 |
1.52e-87 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_dc4ba13c7b3a08b99b70a00e330b2456 | p5@ENST00000437916 |
2.28e-85 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_82143b06b3bec80f0dbf904fbc4963d4 | p1@SERPINE3 |
2.28e-85 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_82143b06b3bec80f0dbf904fbc4963d4 | p1@SERPINE3 |
1.01e-74 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_c5768543d2edab0842d00f1a4fe663b2 | p@chr3:69928426..69928436, + |
1.01e-74 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_c5768543d2edab0842d00f1a4fe663b2 | p@chr3:69928426..69928436, + |
1.29e-74 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_90461782acdc02205385827845cd0df0 | p@chr3:69928404..69928418, + |
1.29e-74 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_90461782acdc02205385827845cd0df0 | p@chr3:69928404..69928418, + |
2.14e-74 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_1cb67501a155134dc7b0a32941ccdd62 | p@chr6:168250971..168250985, + |
2.14e-74 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_1cb67501a155134dc7b0a32941ccdd62 | p@chr6:168250971..168250985, + |
2.14e-74 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_1cb67501a155134dc7b0a32941ccdd62 | p@chr22:37633537..37633546, - |
2.14e-74 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_1cb67501a155134dc7b0a32941ccdd62 | p@chr22:37633537..37633546, - |
3.54e-74 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_2e92c2118ab60fa49ffbc03677e8bfcf | p@chr1:43533230..43533270, + |
3.54e-74 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_2e92c2118ab60fa49ffbc03677e8bfcf | +, p@chr1:43533230..43533270 |
1.54e-66 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_d74bba9507044d4ca1674286d61af093 | p5@CLIC6 |
1.54e-66 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_d74bba9507044d4ca1674286d61af093 | p5@CLIC6 |
2.39e-66 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_dd9cad35948d1ec74da6d3acb6936b24 | p@chr13:51913997..51914020, + |
2.39e-66 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_dd9cad35948d1ec74da6d3acb6936b24 | p@chr13:51913997..51914020, + |
6.53e-66 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_9e31e9b81a6bd80ebdb5a4b0e6b87493 | p@chr6:168251000..168251007, + |
6.53e-66 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_9e31e9b81a6bd80ebdb5a4b0e6b87493 | p@chr6:168251000..168251007, + |
2.98e-60 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_738dbeca791825a8bfc7bf79a4686739 | p@chr13:99135278..99135298, - |
2.98e-60 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_738dbeca791825a8bfc7bf79a4686739 | p@chr13:99135278..99135298, - |
5.01e-55 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_9e7c34dc89ca8430db3304ff1ca131b9 | p@chr3:69928371..69928385, + |
5.01e-55 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_9e7c34dc89ca8430db3304ff1ca131b9 | p@chr3:69928371..69928385, + |
7.24e-55 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_6f802fe891eead563f326121edb2fa7e | p@chr14:87636652..87636657, - |
7.24e-55 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_6f802fe891eead563f326121edb2fa7e | p@chr14:87636652..87636657, - |
1.68e-53 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_0c3c46f0da1ce2ff6eabcb2f1cc7805b | p@chr2:235591286..235591298, + |
1.68e-53 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_0c3c46f0da1ce2ff6eabcb2f1cc7805b | p@chr2:235591286..235591298, + |
6.39e-53 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_b1303650edf6c39795b77dad071e0f19 | p@chr16:84228961..84228982, + |
6.39e-53 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_b1303650edf6c39795b77dad071e0f19 | p5@MFRP, p6@C1QTNF5 |
6.39e-53 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_b1303650edf6c39795b77dad071e0f19 | p@chr16:84228961..84228982, + |
6.39e-53 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_b1303650edf6c39795b77dad071e0f19 | p5@MFRP, p6@C1QTNF5 |
9.6e-51 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_1f0aaca7966283ff9e09a5f68242dacd | p3@CLIC6 |
9.6e-51 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_1f0aaca7966283ff9e09a5f68242dacd | p3@CLIC6 |
1.89e-50 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_8b03ac4dc01fb86dc1fd3ebc20c3e030 | p7@GDPD5 |
1.89e-50 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_8b03ac4dc01fb86dc1fd3ebc20c3e030 | p7@GDPD5 |
7.24e-50 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_b587ad0e0dde8f789c2c9a3f4d87a749 | p4@MFRP, p5@C1QTNF5 |
7.24e-50 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_b587ad0e0dde8f789c2c9a3f4d87a749 | p4@MFRP, p5@C1QTNF5 |
6.25e-45 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_f109dc0b882c84cf04cff084a082001f | p@chr17:932596..932605, - |
6.25e-45 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_f109dc0b882c84cf04cff084a082001f | p@chr17:932596..932605, - |
1.22e-44 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_5ca01b21b34cdc7c2f420e0443028f07 | p5@CYP24A1 |
1.22e-44 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_5ca01b21b34cdc7c2f420e0443028f07 | p5@CYP24A1 |
1.22e-44 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_5ca01b21b34cdc7c2f420e0443028f07 | p1@SLC16A8 |
1.22e-44 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_5ca01b21b34cdc7c2f420e0443028f07 | p1@SLC16A8 |
1.22e-44 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_5ca01b21b34cdc7c2f420e0443028f07 | p@chr17:932340..932343, - |
1.22e-44 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_5ca01b21b34cdc7c2f420e0443028f07 | p@chr17:932340..932343, - |
2.38e-44 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_ed7449815d56ec8fa44bdf9cf7996648 | p@chr3:98672197..98672201, + |
2.38e-44 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_ed7449815d56ec8fa44bdf9cf7996648 | p@chr3:98672197..98672201, + |
2.97e-44 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_1d18547829452a762418ed36d84ba14d | p1@ENST00000437461 |
2.97e-44 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_1d18547829452a762418ed36d84ba14d | p1@ENST00000437461 |
2.97e-44 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_1d18547829452a762418ed36d84ba14d | p@chr3:183733654..183733680, - |
2.97e-44 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_1d18547829452a762418ed36d84ba14d | p@chr3:183733654..183733680, - |
4.49e-44 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_ffe9835dae763e27f31e654bd1f8b8cc | p@chr9:140088882..140088898, - |
4.49e-44 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_ffe9835dae763e27f31e654bd1f8b8cc | p@chr9:140088882..140088898, - |
1.24e-43 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_b089e87f63181a0c22bbc6f58ec0eab2 | p1@LOC100505967 |
1.24e-43 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_b089e87f63181a0c22bbc6f58ec0eab2 | p1@LOC100505967 |
2.95e-43 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_5e0541e63fdb7654a75937ac627c82e4 | p11@SIX3 |
2.95e-43 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_5e0541e63fdb7654a75937ac627c82e4 | p11@SIX3 |
4.55e-43 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_7a1420bd9530a8e6a96828e1779924fa | p2@SLC45A2 |
4.55e-43 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_7a1420bd9530a8e6a96828e1779924fa | p2@SLC45A2 |
3.86e-41 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_284f3b5298b729d683092b2ea5810e05 | p@chr16:68301840..68301845, + |
3.86e-41 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_284f3b5298b729d683092b2ea5810e05 | p@chr16:68301840..68301845, + |
9.96e-41 | FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_eca03f0f464ccb648a1cd6c5efb05684 | p9@DBP |
9.96e-41 | FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_eca03f0f464ccb648a1cd6c5efb05684 | p9@DBP |
1.31e-40 | FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_089f7e0805906cf545a13e0f0630f04c | p6@KRT80 |
1.31e-40 | FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_089f7e0805906cf545a13e0f0630f04c | p6@KRT80 |
1.49e-40 | FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_f2b853036e2549ea59de95d7e057a308 | p5@PPARGC1A |
1.49e-40 | FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_f2b853036e2549ea59de95d7e057a308 | p5@PPARGC1A |
1.71e-40 | FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_6d2f4c0f2057ad1a001180d547b059d0 | p2@MFRP |
1.71e-40 | FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_6d2f4c0f2057ad1a001180d547b059d0 | p2@MFRP |
1.96e-40 | FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_f5f00f9aa9fe151b72fe8c0501faa45a | p3@C1QTNF5, p3@MFRP |
1.96e-40 | FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_f5f00f9aa9fe151b72fe8c0501faa45a | p3@C1QTNF5, p3@MFRP |
2.93e-40 | FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_b8f457d18ced0a96ce4e6a46322a9d2d | p6@PUF60 |
2.93e-40 | FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_b8f457d18ced0a96ce4e6a46322a9d2d | p6@PUF60 |
3.83e-40 | FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_8e1c6721ba822edd0b660ff3e96c617b | p1@ENST00000432125 |
3.83e-40 | FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_8e1c6721ba822edd0b660ff3e96c617b | p1@ENST00000432125 |
6.54e-40 | FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_a4296ab48808ba3eb57cb7dbccc837cf | p6@TRPM3 |
6.54e-40 | FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_a4296ab48808ba3eb57cb7dbccc837cf | p6@TRPM3 |
1.11e-38 | FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_eddb6d9567ecce82446093f606cf9c41 | p5@ALDH3B1 |
1.11e-38 | FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_eddb6d9567ecce82446093f606cf9c41 | p5@ALDH3B1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The monolayer of pigmented epithelium covering the neural retina.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.