Difference between revisions of "UBERON:0001981"
From FANTOM5_SSTAR
| Line 14: | Line 14: | ||
|located_in= | |located_in= | ||
|name=blood vessel | |name=blood vessel | ||
| − | |namespace= | + | |namespace=FANTOM |
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004537 | |part_of=UBERON:0004537 | ||
Latest revision as of 08:23, 12 September 2014
| Name: | blood vessel | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] | ||
| Xrefs: |
| ||
| Synonyms: |
"region of vascular tree organ" EXACT [FMA:50722] "vas sanguineum" RELATED LATIN [Wikipedia:Blood_vessel] "vascular tree organ region" EXACT [FMA:50722] | ||
| Comments: | note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX. Taxon notes: annelids have blood vessels, but this class is not applicable to annelids. | ||
| Alt_id: | UBERON:FMA_63183-XAO_0001011 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Circulatory_System_en.svg.png]
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0000055(vessel),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0004872(splanchnic layer of lateral plate mesoderm),UBERON:0006965(vascular cord) |
| part_of: | UBERON:0004537(blood vasculature) |
Children
| is a: | UBERON:0001982 (capillary),UBERON:0003496 (head blood vessel),UBERON:0003504 (respiratory system blood vessel),UBERON:0003509 (arterial blood vessel),UBERON:0003513 (trunk blood vessel),UBERON:0003920 (venous blood vessel),UBERON:0010260 (umbilical blood vessel),UBERON:0013768 (great vessel of heart),UBERON:0014907 (intersomitic vessel) |
|---|---|
| disjoint from: | UBERON:0001473 (lymphatic vessel) |
| part of: | UBERON:0004237 (blood vessel smooth muscle),UBERON:0004638 (blood vessel endothelium),UBERON:0004797 (blood vessel layer) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11245-116E3 (Fibroblast - Aortic Adventitial, donor1)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001981 (blood vessel), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.37e-99 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_3e8a5a086d7e7918dd97162506c10e71 | p2@SOX17 |
| 4.37e-99 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_3e8a5a086d7e7918dd97162506c10e71 | p2@SOX17 |
| 3.03e-83 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_a770e5c797641adf386b1670841d16b8 | p@chr12:96830430..96830450, + |
| 3.03e-83 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_a770e5c797641adf386b1670841d16b8 | p@chr12:96830430..96830450, + |
| 9.39e-72 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_c9432a70b6146e1b8f4a4eb0de918b29 | p4@SULT1B1 |
| 9.39e-72 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_c9432a70b6146e1b8f4a4eb0de918b29 | p4@SULT1B1 |
| 1.22e-71 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_8868f2211ff5d8d89a7546417da62ec2 | p@chr22:21138343..21138378, + |
| 1.22e-71 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_8868f2211ff5d8d89a7546417da62ec2 | p@chr22:21138343..21138378, + |
| 3.75e-70 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_4338749dd64188c952a1c84f8531d0c4 | p3@SULT1B1 |
| 3.75e-70 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_4338749dd64188c952a1c84f8531d0c4 | p3@SULT1B1 |
| 4.26e-70 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_b40ed51ace82bc49e65969d0d676ca2e | p@chr3:30334038..30334060, + |
| 4.26e-70 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_b40ed51ace82bc49e65969d0d676ca2e | p@chr3:30334038..30334060, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_121c8abb8dfc0e8305e34dcd09dae0a9 | p6@Npy1r |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_121c8abb8dfc0e8305e34dcd09dae0a9 | p6@Npy1r |
| 3.42e-69 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_23aa7941ad602d03d27019abba270e32 | p1@ENST00000439823 |
| 3.42e-69 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_23aa7941ad602d03d27019abba270e32 | p1@ENST00000439823 |
| 1.32e-66 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_9b5e9cb92e5c331e61713c4c8cecd501 | p2@ESM1 |
| 1.32e-66 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_9b5e9cb92e5c331e61713c4c8cecd501 | p2@ESM1 |
| 1.79e-66 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_1be6e24ec351086f8fc0673b9fd98266 | p@chr1:186946626..186946652, + |
| 1.79e-66 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_1be6e24ec351086f8fc0673b9fd98266 | p@chr1:186946626..186946652, + |
| 2.82e-66 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_336233ef3f4ec0227be52c68bbc2daa9 | p10@ECE1 |
| 2.82e-66 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_336233ef3f4ec0227be52c68bbc2daa9 | p10@ECE1 |
| 1.57e-65 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_9645258003124d1d3ee6919ea248f7ca | p8@HHIP |
| 1.57e-65 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_9645258003124d1d3ee6919ea248f7ca | p8@HHIP |
| 4.84e-64 | FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_a6bf0921059a6a0bd7b1c29f63604ea4 | p@chr10:4823096..4823144, - |
| 4.84e-64 | FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_a6bf0921059a6a0bd7b1c29f63604ea4 | p@chr10:4823096..4823144, - |
| 1.6e-63 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_ea7d1141862327d04f6ffdbba18b775c | p10@HHIP |
| 1.6e-63 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_ea7d1141862327d04f6ffdbba18b775c | p10@HHIP |
| 1.6e-62 | FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_5ff35ccb0d458ac0ebc44d3dfb56b656 | p@chr22:21138313..21138336, + |
| 1.6e-62 | FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_5ff35ccb0d458ac0ebc44d3dfb56b656 | p@chr22:21138313..21138336, + |
| 3.56e-60 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_4d5cf2b434d098fd68306cb4a3dd95b4 | p4@MMP1 |
| 3.56e-60 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_4d5cf2b434d098fd68306cb4a3dd95b4 | p4@MMP1 |
| 1.21e-59 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_6d96fefcfbf678aa8a52c08ff9f59166 | p6@HHIP |
| 1.21e-59 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_6d96fefcfbf678aa8a52c08ff9f59166 | p6@HHIP |
| 1.43e-59 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_35e799057a8596593c74eedbe97b0ff2 | p4@ESM1 |
| 1.43e-59 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_35e799057a8596593c74eedbe97b0ff2 | p4@ESM1 |
| 7.93e-59 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_462c2dd39df9f107d46e40739470e41f | p5@HHIP |
| 7.93e-59 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_462c2dd39df9f107d46e40739470e41f | p5@HHIP |
| 1.41e-58 | FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_91c6e6eb321870f5ba5340ee29f520d3 | p24@WWTR1 |
| 1.41e-58 | FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_91c6e6eb321870f5ba5340ee29f520d3 | p24@WWTR1 |
| 5.62e-58 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_8953ecbc8cd2dc66422f9a68f3451e8e | p@chr11:86649508..86649546, - |
| 5.62e-58 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_8953ecbc8cd2dc66422f9a68f3451e8e | p@chr11:86649508..86649546, - |
| 8.9e-57 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_535a3a3563b2441200e0b71eec60ba18 | p4@HHIP |
| 8.9e-57 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_535a3a3563b2441200e0b71eec60ba18 | p4@HHIP |
| 4.2e-56 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_c9e7c3a8da27b0300ebfa03c6804ab45 | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_c9e7c3a8da27b0300ebfa03c6804ab45 | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_c9e7c3a8da27b0300ebfa03c6804ab45 | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_c9e7c3a8da27b0300ebfa03c6804ab45 | p4@Il6st |
| 4.77e-56 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_2edf7c53464fc09f564595e410967ea4 | p7@HHIP |
| 4.77e-56 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_2edf7c53464fc09f564595e410967ea4 | p7@HHIP |
| 1.07e-55 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_fa0d0aa4467c9c4c18604a8abe751c7a | p@chr11:102667477..102667490, - |
| 1.07e-55 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_fa0d0aa4467c9c4c18604a8abe751c7a | p@chr11:102667477..102667490, - |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_b4052e9255129b35fdded4a63dee187c | p@chr2:65009852..65009866, - |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_b4052e9255129b35fdded4a63dee187c | p@chr2:65009852..65009866, - |
| 2.0e-55 | FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_aa802528f0ca7ba4e4b27be15f8da0a7 | p@chr11:102668178..102668206, + |
| 2.0e-55 | FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_aa802528f0ca7ba4e4b27be15f8da0a7 | p@chr11:102668178..102668206, + |
| 9.51e-55 | FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_48407d0929b8d20570becee4ce161721 | p@chr4:86700590..86700615, + |
| 9.51e-55 | FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_48407d0929b8d20570becee4ce161721 | p@chr4:86700590..86700615, + |
| 1.16e-54 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_8dd7e01318648d21b3ed1d46893c653c | p2@RHOJ |
| 1.16e-54 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_8dd7e01318648d21b3ed1d46893c653c | p2@RHOJ |
| 5.43e-54 | FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_802e9aff84af6ffc05d87f90486eac0c | p@chr11:102662162..102662217, - |
| 5.43e-54 | FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_802e9aff84af6ffc05d87f90486eac0c | p@chr11:102662162..102662217, - |
| 1.56e-53 | FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_282839fd0904dbde4849ba05143f1d55 | p3@MMP1 |
| 1.56e-53 | FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_282839fd0904dbde4849ba05143f1d55 | p3@MMP1 |
| 2.27e-53 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_95cadc2ae5ea8e352c247b04747a0410 | p@chr11:128562673..128562716, - |
| 2.27e-53 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_95cadc2ae5ea8e352c247b04747a0410 | p@chr11:128562673..128562716, - |
| 5.18e-53 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_c911daee1304900a7d81c9be8b8d10cf | p@chr4:7846444..7846449, - |
| 5.18e-53 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_c911daee1304900a7d81c9be8b8d10cf | p@chr4:7846444..7846449, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_a973137d7b0fbb973abfa5d927311696 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_a973137d7b0fbb973abfa5d927311696 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_a973137d7b0fbb973abfa5d927311696 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_a973137d7b0fbb973abfa5d927311696 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_a973137d7b0fbb973abfa5d927311696 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_a973137d7b0fbb973abfa5d927311696 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_a973137d7b0fbb973abfa5d927311696 | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_a973137d7b0fbb973abfa5d927311696 | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_a973137d7b0fbb973abfa5d927311696 | +, p@chr17:87574327..87574332 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_a973137d7b0fbb973abfa5d927311696 | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_a973137d7b0fbb973abfa5d927311696 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_a973137d7b0fbb973abfa5d927311696 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_a973137d7b0fbb973abfa5d927311696 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_a973137d7b0fbb973abfa5d927311696 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_a973137d7b0fbb973abfa5d927311696 | p@chr17:87574327..87574332, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_a973137d7b0fbb973abfa5d927311696 | p@chr8:69228447..69228492, + |
| 4.12e-52 | FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_88284a8ab2345b44a74def5e05c2ef94 | p5@MMP1 |
| 4.12e-52 | FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_88284a8ab2345b44a74def5e05c2ef94 | p5@MMP1 |
| 9.8e-52 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_5d7983d47bbe1b3259cfcee8174b6127 | p@chr11:102661517..102661541, - |
| 9.8e-52 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_5d7983d47bbe1b3259cfcee8174b6127 | p@chr11:102661517..102661541, - |
| 1.64e-51 | FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_4e50784e3419f09d6bcb07bef9646264 | p5@OXA1L |
| 1.64e-51 | FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_4e50784e3419f09d6bcb07bef9646264 | p5@OXA1L |
| 2.14e-51 | FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_fbd1958ffbde085649fe5eb0e8ca1356 | p9@HHIP |
| 2.14e-51 | FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_fbd1958ffbde085649fe5eb0e8ca1356 | p9@HHIP |
| 6.64e-51 | FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_00fe5c84d9758835da17199f71afc6c5 | p@chr4:54931911..54931926, - |
| 6.64e-51 | FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_00fe5c84d9758835da17199f71afc6c5 | p@chr4:54931911..54931926, - |
| 7.65e-51 | FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_c0bf32ec8e6adc8226b827b3dcce4772 | p13@HHIP |
| 7.65e-51 | FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_c0bf32ec8e6adc8226b827b3dcce4772 | p13@HHIP |
| 2.55e-50 | FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_639bf16b14623646c43b4e736a6cf8b4 | p@chr11:102668708..102668742, + |
| 2.55e-50 | FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_639bf16b14623646c43b4e736a6cf8b4 | p@chr11:102668708..102668742, + |
| 7.98e-50 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a63d83727fb45739fe2321b7d8fba96f | +, p@chr6:53359400..53359406 |
| 7.98e-50 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a63d83727fb45739fe2321b7d8fba96f | p@chr6:53359400..53359406, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Any of the vessels through which blood circulates in the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
