Difference between revisions of "UBERON:0002049"
From FANTOM5_SSTAR
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] | |def="an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] | ||
| − | |xref=BTO:0003718;;FMA:69050;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png;;ZFA:0005249 | + | |xref=BTO:0003718;;FMA:69050;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png;;TAO:0001079;;TAO:0005249;;ZFA:0005249 |
|is_a=UBERON:0000477 | |is_a=UBERON:0000477 | ||
|synonym="vascular network" EXACT [FMA:69050] | |synonym="vascular network" EXACT [FMA:69050] | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
| − | |||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
| − | |part_of= | + | |part_of= |
| − | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | + | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl |
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 08:00, 26 June 2012
| Name: | vasculature | ||
|---|---|---|---|
| Definition: | "an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Examples: vasculature of lung, vasculature of face." [ZFA:0005249] | ||
| Xrefs: |
| ||
| Synonyms: | "vascular network" EXACT [FMA:69050] | ||
| Comments: | see also: vascular system | ||
| Alt_id: | UBERON:FMA_69050-XAO_0001010-ZFA_0001079 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Circulatory_System_en.svg.png]
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|
Children
| is a: | UBERON:0002200 (vasculature of head),UBERON:0002201 (vasculature of trunk),UBERON:0004536 (lymph vasculature),UBERON:0004537 (blood vasculature),UBERON:0005629 (vascular plexus),UBERON:0006876 (vasculature of organ),UBERON:0007204 (brachiocephalic vasculature) |
|---|---|
| part of: | CL:0000359 (vascular associated smooth muscle cell),UBERON:0010523 (microcirculatory vessel) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002049 (vasculature), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.66e-91 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_f5caccf0fdabd3119871ba0bf51a1e80 | p2@SOX17 |
| 8.66e-91 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_f5caccf0fdabd3119871ba0bf51a1e80 | p2@SOX17 |
| 2.75e-85 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_634adea5cdd78bf5cd14c8ac05aeb476 | p@chr12:96830430..96830450, + |
| 2.75e-85 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_634adea5cdd78bf5cd14c8ac05aeb476 | p@chr12:96830430..96830450, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_ceb3644c7c8be4feab0eafb35a1a8272 | p6@Npy1r |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_ceb3644c7c8be4feab0eafb35a1a8272 | p6@Npy1r |
| 2.74e-69 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_e18f44ea522c178196c5b3a25c8a7eec | p@chr1:186946626..186946652, + |
| 2.74e-69 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_e18f44ea522c178196c5b3a25c8a7eec | p@chr1:186946626..186946652, + |
| 3.72e-67 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_6235b1048ae5fd06a11b335b7c1fe8b1 | p10@ECE1 |
| 3.72e-67 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_6235b1048ae5fd06a11b335b7c1fe8b1 | p10@ECE1 |
| 1.06e-65 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_3dec99fbfa1dde5ab7e8bebdda048e8c | p@chr3:30334038..30334060, + |
| 1.06e-65 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_3dec99fbfa1dde5ab7e8bebdda048e8c | p@chr3:30334038..30334060, + |
| 2.18e-64 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_297d04656734dcbfddb0b4e656927ccf | p2@RHOJ |
| 2.18e-64 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_297d04656734dcbfddb0b4e656927ccf | p2@RHOJ |
| 1.3e-63 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_cbc117e1c43e042ed8839c78907e49bc | p10@HHIP |
| 1.3e-63 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_cbc117e1c43e042ed8839c78907e49bc | p10@HHIP |
| 1.57e-63 | FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3bcc4e40e25a44ed532b3c1dbc02958c | p@chr10:4823096..4823144, - |
| 1.57e-63 | FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3bcc4e40e25a44ed532b3c1dbc02958c | p@chr10:4823096..4823144, - |
| 2.67e-63 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_9df9c969f88c5c0a1748bdb83fdefbec | p2@ESM1 |
| 2.67e-63 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_9df9c969f88c5c0a1748bdb83fdefbec | p2@ESM1 |
| 6.77e-60 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_1d33f5654df0ea4ccf6e594166d2bb91 | p8@HHIP |
| 6.77e-60 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_1d33f5654df0ea4ccf6e594166d2bb91 | p8@HHIP |
| 3.46e-57 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_6e56fc47335306a6167c4f0aa7ddc0e0 | p4@SULT1B1 |
| 3.46e-57 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_6e56fc47335306a6167c4f0aa7ddc0e0 | p4@SULT1B1 |
| 2.1e-56 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_a07c7ec9192229ae9b3167eb29d199fd | p4@ESM1 |
| 2.1e-56 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_a07c7ec9192229ae9b3167eb29d199fd | p4@ESM1 |
| 3.16e-56 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_fb83930d7fa5bcaf057f9c677d3ea9ad | p6@HHIP |
| 3.16e-56 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_fb83930d7fa5bcaf057f9c677d3ea9ad | p6@HHIP |
| 4.2e-56 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_47b07774397b1dd55b6105c262213ef9 | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_47b07774397b1dd55b6105c262213ef9 | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_47b07774397b1dd55b6105c262213ef9 | p4@Il6st |
| 4.2e-56 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_47b07774397b1dd55b6105c262213ef9 | p5@Npy1r |
| 6.41e-56 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_46aedb23541a3232e5d42be7cfaec0d8 | p@chr12:105863636..105863650, + |
| 6.41e-56 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_46aedb23541a3232e5d42be7cfaec0d8 | p@chr12:105863636..105863650, + |
| 8.62e-56 | FFCP PHASE2:Hg19::chr5:150019857..150019868,+#_1bcf9ffd673c78fefededa504426e1a6 | p18@SYNPO |
| 8.62e-56 | FFCP PHASE1:Hg19::chr5:150019857..150019868,+#_1bcf9ffd673c78fefededa504426e1a6 | p18@SYNPO |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_ed82d542284daf6a3c533ba2ecdbd9e3 | p@chr2:65009852..65009866, - |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_ed82d542284daf6a3c533ba2ecdbd9e3 | p@chr2:65009852..65009866, - |
| 2.63e-55 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_a1a0a0c6f1394f0cd4d65b90c04763e0 | p3@SULT1B1 |
| 2.63e-55 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_a1a0a0c6f1394f0cd4d65b90c04763e0 | p3@SULT1B1 |
| 7.85e-55 | FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_b3e4749377113525ab3647eee43ef8d4 | p@chr4:86700590..86700615, + |
| 7.85e-55 | FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_b3e4749377113525ab3647eee43ef8d4 | p@chr4:86700590..86700615, + |
| 6.3e-54 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_1265f738397ed2674a55675f28424f98 | p1@ENST00000439823 |
| 6.3e-54 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_1265f738397ed2674a55675f28424f98 | p1@ENST00000439823 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_c09d015916d39f4c3055623c04d9cba0 | p@chr17:87574327..87574332, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_c09d015916d39f4c3055623c04d9cba0 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_c09d015916d39f4c3055623c04d9cba0 | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_c09d015916d39f4c3055623c04d9cba0 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_c09d015916d39f4c3055623c04d9cba0 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_c09d015916d39f4c3055623c04d9cba0 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_c09d015916d39f4c3055623c04d9cba0 | +, p@chr17:87574327..87574332 |
| 1.64e-52 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_c09d015916d39f4c3055623c04d9cba0 | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_c09d015916d39f4c3055623c04d9cba0 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_c09d015916d39f4c3055623c04d9cba0 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_c09d015916d39f4c3055623c04d9cba0 | p@chr17:14827154..14827169, - |
| 1.86e-52 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_b406161e81f4e480626db11afb15f082 | p4@HHIP |
| 1.86e-52 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_b406161e81f4e480626db11afb15f082 | p4@HHIP |
| 2.0e-52 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_b95c0ba21f6c2fcce825504d50ef1e89 | p@chr15:39423060..39423066, + |
| 2.0e-52 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_b95c0ba21f6c2fcce825504d50ef1e89 | p@chr15:39423060..39423066, + |
| 3.35e-52 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_680595f9cb5989f0b96b4634755a598f | p5@HHIP |
| 3.35e-52 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_680595f9cb5989f0b96b4634755a598f | p5@HHIP |
| 6.86e-52 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_1088f9662ead7898fc96d60701a80dec | p@chr11:86649508..86649546, - |
| 6.86e-52 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_1088f9662ead7898fc96d60701a80dec | p@chr11:86649508..86649546, - |
| 7.74e-52 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_be7c8bc686fb8ab4ca5dda09c8cde30f | p@chr22:21138343..21138378, + |
| 7.74e-52 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_be7c8bc686fb8ab4ca5dda09c8cde30f | p@chr22:21138343..21138378, + |
| 1.23e-51 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_cee2e54c5b6798e471c7cee8956f507e | p7@HHIP |
| 1.23e-51 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_cee2e54c5b6798e471c7cee8956f507e | p7@HHIP |
| 1.92e-51 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_10a6b03f86cd4925b97d062bffb70185 | +, p@chr12:105863654..105863682 |
| 1.92e-51 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_10a6b03f86cd4925b97d062bffb70185 | p@chr12:105863654..105863682, + |
| 5.09e-51 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_c27757060d609728a92d85f20fab995f | p@chr11:128562673..128562716, - |
| 5.09e-51 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_c27757060d609728a92d85f20fab995f | p@chr11:128562673..128562716, - |
| 2.43e-49 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_8cb43fee30048e0e7b348d0a707ff42a | p@chr11:102667477..102667490, - |
| 2.43e-49 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_8cb43fee30048e0e7b348d0a707ff42a | p@chr11:102667477..102667490, - |
| 4.78e-49 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_a74af55bc5fc166e4bb989c1b8318117 | p4@MMP1 |
| 4.78e-49 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_a74af55bc5fc166e4bb989c1b8318117 | p4@MMP1 |
| 4.78e-49 | FFCP PHASE2:Hg19::chr11:89224667..89224681,-#_a74af55bc5fc166e4bb989c1b8318117 | p2@NOX4 |
| 4.78e-49 | FFCP PHASE1:Hg19::chr11:89224667..89224681,-#_a74af55bc5fc166e4bb989c1b8318117 | p2@NOX4 |
| 4.86e-49 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_059223c00036e496ed4d469fd0b5c099 | p1@MIR216A |
| 4.86e-49 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_059223c00036e496ed4d469fd0b5c099 | p1@MIR216A |
| 7.23e-49 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_218da1a1c128fc5721cfc82cb4fd9c53 | p@chr6:78171746..78171769, + |
| 7.23e-49 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_218da1a1c128fc5721cfc82cb4fd9c53 | p@chr6:78171746..78171769, + |
| 9.08e-49 | FFCP PHASE1:Hg19::chr18:37550388..37550448,+#_4eaab85002b4769a132ed1efd81c4aaa | p@chr18:37550388..37550448, + |
| 9.08e-49 | FFCP PHASE2:Hg19::chr18:37550388..37550448,+#_4eaab85002b4769a132ed1efd81c4aaa | p@chr18:37550388..37550448, + |
| 1.11e-48 | FFCP PHASE2:Hg19::chr5:141060389..141060439,-#_1a1fab2fea60b231735f8702c0d99e6f | p3@ARAP3 |
| 1.11e-48 | FFCP PHASE1:Hg19::chr5:141060389..141060439,-#_1a1fab2fea60b231735f8702c0d99e6f | p3@ARAP3 |
| 3.35e-48 | FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_b562896c946d37d666f0b36113cbc767 | p@chr11:128563283..128563297, - |
| 3.35e-48 | FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_b562896c946d37d666f0b36113cbc767 | p@chr11:128563283..128563297, - |
| 7.2e-48 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_0b5ac5e9866387e435cd27facd2cb238 | p@chr6:3753188..3753192, - |
| 7.2e-48 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_0b5ac5e9866387e435cd27facd2cb238 | p@chr6:3753188..3753192, - |
| 2.13e-47 | FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_ada9914973e1484014b3b15497e1c1e0 | p3@MMP1 |
| 2.13e-47 | FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_ada9914973e1484014b3b15497e1c1e0 | p3@MMP1 |
| 4.1e-47 | FFCP PHASE1:Hg19::chr2:202563351..202563376,-#_3e0bf8580c1c47a60a3581a5a2d6dff8 | p1@MPP4 |
| 4.1e-47 | FFCP PHASE2:Hg19::chr2:202563351..202563376,-#_3e0bf8580c1c47a60a3581a5a2d6dff8 | p1@MPP4 |
| 6.17e-47 | FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_498fab0f501092f0513d696d55f65420 | p1@C15orf54 |
| 6.17e-47 | FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_498fab0f501092f0513d696d55f65420 | p1@C15orf54 |
