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Revision as of 17:15, 15 June 2012

Name:trunk
Definition:"Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk.[FMA]. Organism subdivision that is the part of the body posterior to the head and anterior to the tail. // Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [FMA:7181, Wikipedia:Torso, ZFA:0001115, ZFIN:curator]
Xrefs:
links:

AAO:0000612
AAO:0010339
BILA:0000116
BTO:0001493
EFO:0000966
FMA:7181
galen:Trunk
MA:0000004
MAT:0000296
MIAA:0000296
ncithesaurus:Trunk
OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA
SCTID:262225004
TAO:0001115
XAO:0003025

ZFA:0001115
Synonyms: "Rumpf" RELATED [BTO:0001493]
"torso" EXACT []
"trunk region" RELATED [AAO:0000612]
Comments:editor note - check AAO
Alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision)
disjoint_from:UBERON:0002464(nerve trunk)



Children

is a:FF:0011178 (Skin - torso)
part of:UBERON:0001774 (muscle of trunk),UBERON:0002075 (viscus),UBERON:0002201 (vasculature of trunk),UBERON:0003513 (trunk blood vessel),UBERON:0003586 (trunk connective tissue),UBERON:0003898 (skeletal muscle of trunk),UBERON:0004161 (septum transversum),UBERON:0005177 (trunk region element),UBERON:0005256 (trunk mesenchyme),UBERON:0008425 (mammary ridge),UBERON:0009569 (subdivision of trunk)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002100 (trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.08e-26FFCP PHASE2:Hg19::chr19:48894762..48894830,-#_31a8f687411b6827f948751103a99b2ep1@KDELR1
1.08e-26FFCP PHASE1:Hg19::chr19:48894762..48894830,-#_31a8f687411b6827f948751103a99b2ep1@KDELR1
1.17e-26FFCP PHASE1:Hg19::chr15:96874012..96874042,+#_b26820feaf3eab6321aaf00dec2e792bp2@NR2F2
1.17e-26FFCP PHASE2:Hg19::chr15:96874012..96874042,+#_b26820feaf3eab6321aaf00dec2e792bp2@NR2F2
1.41e-26FFCP PHASE2:Mm9::chr2:147872790..147872821,-#_70f5da61d219c18d03c7012ce59bb544p2@Foxa2
1.41e-26FFCP PHASE1:Mm9::chr2:147872790..147872821,-#_70f5da61d219c18d03c7012ce59bb544p2@Foxa2
1.68e-26FFCP PHASE2:Hg19::chr8:30242040..30242045,+#_fa4c1b735b1f22457e2cd3a8323ff5c9p2@RBPMS
1.68e-26FFCP PHASE1:Hg19::chr8:30242040..30242045,+#_fa4c1b735b1f22457e2cd3a8323ff5c9p2@RBPMS
9.29e-26FFCP PHASE2:Hg19::chr19:10445451..10445513,-#_dc17c1568ef143403f466179d70101f2p@chr19:10445451..10445513, -
9.29e-26FFCP PHASE1:Hg19::chr19:10445451..10445513,-#_dc17c1568ef143403f466179d70101f2p@chr19:10445451..10445513, -
1.98e-25FFCP PHASE2:Hg19::chr15:96874145..96874166,+#_bdb8a2b2339442e64a322c50d5dd62b8p7@NR2F2
1.98e-25FFCP PHASE1:Hg19::chr15:96874145..96874166,+#_bdb8a2b2339442e64a322c50d5dd62b8p7@NR2F2
5.05e-25FFCP PHASE2:Hg19::chr7:6523755..6523829,-#_2e42b697e71f30ac3824797dab14c455p1@DAGLB, p1@KDELR2
5.05e-25FFCP PHASE1:Hg19::chr7:6523755..6523829,-#_2e42b697e71f30ac3824797dab14c455p1@DAGLB, p1@KDELR2
9.32e-25FFCP PHASE2:Hg19::chr8:30242048..30242064,+#_f6dd61199f16d5fd1cdb8d2546673923p1@RBPMS
9.32e-25FFCP PHASE1:Hg19::chr8:30242048..30242064,+#_f6dd61199f16d5fd1cdb8d2546673923p1@RBPMS
1.39e-24FFCP PHASE1:Hg19::chr8:30241934..30241945,+#_9cbff81ab94e49f56d65baaa96043461p3@RBPMS
1.39e-24FFCP PHASE2:Hg19::chr8:30241934..30241945,+#_9cbff81ab94e49f56d65baaa96043461p3@RBPMS
8.19e-24FFCP PHASE2:Mm9::chr4:149377244..149377258,-#_0135410f22af703aa97ad7c9a8426e91p3@H6pd
8.19e-24FFCP PHASE1:Mm9::chr4:149377244..149377258,-#_0135410f22af703aa97ad7c9a8426e91p3@H6pd
1.01e-23FFCP PHASE2:Hg19::chr19:50379867..50379920,-#_9106b19151bd809a6793d17cd2ab4d03p1@AKT1S1
1.01e-23FFCP PHASE1:Hg19::chr19:50379867..50379920,-#_9106b19151bd809a6793d17cd2ab4d03p1@AKT1S1
1.07e-23FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_7915a101cdadba3905753a2a1a792a82p4@S100A16
1.07e-23FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_7915a101cdadba3905753a2a1a792a82p4@S100A16
1.08e-23FFCP PHASE1:Hg19::chr2:27255806..27255879,+#_a78d8b348b82492e9b666774f6bc9a04p1@TMEM214
1.08e-23FFCP PHASE2:Hg19::chr2:27255806..27255879,+#_a78d8b348b82492e9b666774f6bc9a04p1@TMEM214
1.32e-23FFCP PHASE1:Hg19::chr5:148521286..148521377,+#_2dbc824ca06e5419d54e32aef38ab846p2@ABLIM3
1.32e-23FFCP PHASE2:Hg19::chr5:148521286..148521377,+#_2dbc824ca06e5419d54e32aef38ab846p2@ABLIM3
1.34e-23FFCP PHASE1:Hg19::chr20:30795664..30795743,+#_c3667715b2b6b06323a08a7c9d771a8dp1@POFUT1
1.34e-23FFCP PHASE2:Hg19::chr20:30795664..30795743,+#_c3667715b2b6b06323a08a7c9d771a8dp1@POFUT1
1.5e-23FFCP PHASE1:Hg19::chr4:39529049..39529067,-#_9180f2730f97c1dba0af40cc68c9379fp1@UGDH
1.5e-23FFCP PHASE2:Hg19::chr4:39529049..39529067,-#_9180f2730f97c1dba0af40cc68c9379fp1@UGDH
1.59e-23FFCP PHASE2:Hg19::chr1:1167419..1167430,-#_6f875b035bf283439d24eeea5e46f16ap3@SDF4
1.59e-23FFCP PHASE1:Hg19::chr1:1167419..1167430,-#_6f875b035bf283439d24eeea5e46f16ap3@SDF4
1.92e-23FFCP PHASE2:Hg19::chr2:73114502..73114561,+#_8368512f6fc2c03afaf629977cf2f575p1@SPR
1.92e-23FFCP PHASE1:Hg19::chr2:73114502..73114561,+#_8368512f6fc2c03afaf629977cf2f575p1@SPR
1.93e-23FFCP PHASE2:Hg19::chr9:140446314..140446398,+#_50554cc0156afddc37b3c60d011350fbp1@MRPL41
1.93e-23FFCP PHASE1:Hg19::chr9:140446314..140446398,+#_50554cc0156afddc37b3c60d011350fbp1@MRPL41
2.36e-23FFCP PHASE2:Hg19::chr3:150264272..150264329,-#_9300eb8128e02cd89bf19120af4dd352p1@SERP1
2.36e-23FFCP PHASE1:Hg19::chr3:150264272..150264329,-#_9300eb8128e02cd89bf19120af4dd352p1@SERP1
2.53e-23FFCP PHASE1:Hg19::chr11:66056596..66056622,-#_94ad4aec5967ebb2dd9794968641af53p1@YIF1A
2.53e-23FFCP PHASE2:Hg19::chr11:66056596..66056622,-#_94ad4aec5967ebb2dd9794968641af53p1@YIF1A
3.19e-23FFCP PHASE2:Hg19::chr1:153581468..153581499,-#_397b8963edf21df424081e06c4dd3522p3@S100A16
3.19e-23FFCP PHASE1:Hg19::chr1:153581468..153581499,-#_397b8963edf21df424081e06c4dd3522p3@S100A16
5.69e-23FFCP PHASE1:Hg19::chr7:148725544..148725630,-#_c5be91bab2b179047dbe23aeccb2b932p1@PDIA4
5.69e-23FFCP PHASE2:Hg19::chr7:148725544..148725630,-#_c5be91bab2b179047dbe23aeccb2b932p1@PDIA4
5.77e-23FFCP PHASE2:Mm9::chr19:34821713..34821741,-#_f7419dd67814209274baf9ae5097264ap4@Slc16a12
5.77e-23FFCP PHASE1:Mm9::chr19:34821713..34821741,-#_f7419dd67814209274baf9ae5097264ap4@Slc16a12
6.07e-23FFCP PHASE1:Mm9::chr4:144483085..144483096,+#_ce30c52af55f4f6406f511a8891e620bp12@Dhrs3
6.07e-23FFCP PHASE2:Mm9::chr4:144483085..144483096,+#_ce30c52af55f4f6406f511a8891e620bp12@Dhrs3
6.12e-23FFCP PHASE2:Mm9::chr10:127188729..127188740,-#_5c9f3fc5fd4d304ba7f0c289f5b1d71dp3@Gpr182
6.12e-23FFCP PHASE1:Mm9::chr10:127188729..127188740,-#_5c9f3fc5fd4d304ba7f0c289f5b1d71dp3@Gpr182
6.5e-23FFCP PHASE2:Hg19::chr1:153581503..153581520,-#_ead01e4eb88760df3bcc6056bd7a614fp5@S100A16
6.5e-23FFCP PHASE1:Hg19::chr1:153581503..153581520,-#_ead01e4eb88760df3bcc6056bd7a614fp5@S100A16
6.69e-23FFCP PHASE2:Hg19::chr2:85788551..85788601,-#_c7afa70b6e4146d78892d10681882828p2@GGCX
6.69e-23FFCP PHASE1:Hg19::chr2:85788551..85788601,-#_c7afa70b6e4146d78892d10681882828p2@GGCX
6.7e-23FFCP PHASE1:Hg19::chr1:113249734..113249762,-#_fe8985cbb93e5c1145c1a2a7ef7540b0p1@RHOC
6.7e-23FFCP PHASE2:Hg19::chr1:113249734..113249762,-#_fe8985cbb93e5c1145c1a2a7ef7540b0p1@RHOC
8.22e-23FFCP PHASE1:Hg19::chr11:69455914..69455932,+#_c362e6f4ad4d4a3abdb202f30649a597p1@CCND1
8.22e-23FFCP PHASE2:Hg19::chr11:69455914..69455932,+#_c362e6f4ad4d4a3abdb202f30649a597p1@CCND1
1.24e-22FFCP PHASE1:Mm9::chr2:3031492..3031497,+#_c2e42ccfce5f672993d52aa5afd84980p3@Fam171a1
1.24e-22FFCP PHASE2:Mm9::chr2:3031492..3031497,+#_c2e42ccfce5f672993d52aa5afd84980p3@Fam171a1
1.27e-22FFCP PHASE2:Hg19::chr15:96874244..96874259,+#_0c31188ed927dc8cd7672ad70649bdbep5@NR2F2
1.27e-22FFCP PHASE1:Hg19::chr15:96874244..96874259,+#_0c31188ed927dc8cd7672ad70649bdbep5@NR2F2
1.63e-22FFCP PHASE1:Mm9::chr19:44061023..44061034,-#_b2aeae537a054761341704408f3e6decp5@Cpn1
1.63e-22FFCP PHASE2:Mm9::chr19:44061023..44061034,-#_b2aeae537a054761341704408f3e6decp5@Cpn1
1.63e-22FFCP PHASE1:Mm9::chr19:46647912..46647926,+#_b2aeae537a054761341704408f3e6decp2@Sfxn2
1.63e-22FFCP PHASE2:Mm9::chr19:46647912..46647926,+#_b2aeae537a054761341704408f3e6decp2@Sfxn2
1.65e-22FFCP PHASE2:Mm9::chr18:65185637..65185658,+#_4eecf999eed4b71017916bd7edb6f2c7p19@Nedd4l
1.65e-22FFCP PHASE1:Mm9::chr18:65185637..65185658,+#_4eecf999eed4b71017916bd7edb6f2c7p19@Nedd4l
1.73e-22FFCP PHASE1:Hg19::chr2:227664522..227664544,-#_13df8e3250613bae42481899a4b5f16fp1@IRS1
1.73e-22FFCP PHASE2:Hg19::chr2:227664522..227664544,-#_13df8e3250613bae42481899a4b5f16fp1@IRS1
1.74e-22FFCP PHASE1:Hg19::chr4:69242026..69242064,+#_a6b453f537205d11e8e50bf2608fad87p2@MT1P2
1.74e-22FFCP PHASE2:Hg19::chr4:69242026..69242064,+#_a6b453f537205d11e8e50bf2608fad87p2@MT1P2
2.72e-22FFCP PHASE2:Hg19::chr15:96874063..96874074,+#_c6d8128abdc8a22977605db5cd6bdc15p10@NR2F2
2.72e-22FFCP PHASE1:Hg19::chr15:96874063..96874074,+#_c6d8128abdc8a22977605db5cd6bdc15p10@NR2F2
2.81e-22FFCP PHASE1:Mm9::chr5:97168683..97168705,-#_0b328666a93ae33075df6760d31ea904p@chr5:97168683..97168705, -
2.81e-22FFCP PHASE2:Mm9::chr5:97168683..97168705,-#_0b328666a93ae33075df6760d31ea904p@chr5:97168683..97168705, -
3.86e-22FFCP PHASE2:Hg19::chr19:18496957..18496977,+#_8fbe3e3c5b1326521a7c77c2b2808aa3p1@GDF15
3.86e-22FFCP PHASE1:Hg19::chr19:18496957..18496977,+#_8fbe3e3c5b1326521a7c77c2b2808aa3p1@GDF15
5.21e-22FFCP PHASE1:Hg19::chr15:96873921..96873946,+#_e718e22e3957e6a59d788671b32669f4p1@NR2F2
5.21e-22FFCP PHASE2:Hg19::chr15:96873921..96873946,+#_e718e22e3957e6a59d788671b32669f4p1@NR2F2
5.79e-22FFCP PHASE1:Hg19::chr17:38599693..38599708,+#_4df5e5ee2cc99aad542b23b81a07e2b0p1@IGFBP4
5.79e-22FFCP PHASE2:Hg19::chr17:38599693..38599708,+#_4df5e5ee2cc99aad542b23b81a07e2b0p1@IGFBP4
6.84e-22FFCP PHASE1:Hg19::chr7:93520056..93520072,-#_f787ffea23cf0fd3476e758ea014bf69p1@TFPI2
6.84e-22FFCP PHASE2:Hg19::chr7:93520056..93520072,-#_f787ffea23cf0fd3476e758ea014bf69p1@TFPI2
7.02e-22FFCP PHASE1:Mm9::chr19:34821684..34821709,-#_0a7bdb1aa0fdf574b8da313479c64ccap5@Slc16a12
7.02e-22FFCP PHASE2:Mm9::chr19:34821684..34821709,-#_0a7bdb1aa0fdf574b8da313479c64ccap5@Slc16a12
7.26e-22FFCP PHASE2:Hg19::chr22:19166241..19166257,-#_69e8b49aa74b544053a3c413f5b0b232p1@SLC25A1
7.26e-22FFCP PHASE1:Hg19::chr22:19166241..19166257,-#_69e8b49aa74b544053a3c413f5b0b232p1@SLC25A1
7.31e-22FFCP PHASE1:Hg19::chr20:34287290..34287356,+#_b260125b16a7f7696fe4ff6df734ef92p1@ROMO1
7.31e-22FFCP PHASE2:Hg19::chr20:34287290..34287356,+#_b260125b16a7f7696fe4ff6df734ef92p1@ROMO1
8.86e-22FFCP PHASE1:Mm9::chr12:77356231..77356244,+#_3515576e522f889272665e24af0f0edcp2@Mthfd1
8.86e-22FFCP PHASE2:Mm9::chr12:77356231..77356244,+#_3515576e522f889272665e24af0f0edcp2@Mthfd1
9.09e-22FFCP PHASE2:Hg19::chr16:3115299..3115312,+#_2554c06b0080bcf562f47a36cf794061p5@IL32
9.09e-22FFCP PHASE1:Hg19::chr16:3115299..3115312,+#_2554c06b0080bcf562f47a36cf794061p5@IL32
9.2e-22FFCP PHASE1:Mm9::chr15:96850371..96850403,-#_37a77db93ae2d1c41f4980e1f95d51dbp@chr15:96850371..96850403, -
9.2e-22FFCP PHASE2:Mm9::chr15:96850371..96850403,-#_37a77db93ae2d1c41f4980e1f95d51dbp@chr15:96850371..96850403, -
1.06e-21FFCP PHASE1:Hg19::chr7:72992865..72993012,-#_ba30e054f954a8567dc92b9beef1bbefp1@TBL2
1.06e-21FFCP PHASE2:Hg19::chr7:72992865..72993012,-#_ba30e054f954a8567dc92b9beef1bbefp1@TBL2

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