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Difference between revisions of "UBERON:0002199"

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{{UBERON
 
{{UBERON
|id=UBERON:0002199
 
|name=integument
 
|namespace=
 
|def="The dermis, epidermis and hypodermis." [Wikipedia:Integument]
 
|xref=AAO:0000239;;BTO:0000634;;EHDAA2:0001844;;FMA:74657;;galen:Integument;;MESH:A.17.815;;TAO:0000368;;VSAO:0000029;;ZFA:0000368
 
|is_a=UBERON:0003102
 
|synonym="dermal system" RELATED [BTO:0000634];;"dermoid system" RELATED [BTO:0000634];;"Hautsystem" RELATED [BTO:0000634];;"integumentum commune" EXACT [FMA:74657, FMA:TA];;"skin" RELATED [];;"tegument" RELATED [BTO:0000634];;"the integument" EXACT [FMA:74657]
 
|comment=Usage notes: in FMA intergument = skin+superficial fascia(hypodermis), skin=dermis+epidermis+hair_nail. Note that the definition provided here excludes the more general sense of the term 'integument' used in invertebrates. Note that the VSAO class appears to include adnexa by its definition.
 
 
|alt_id=UBERON:FMA_74657-ZFA_0000368
 
|alt_id=UBERON:FMA_74657-ZFA_0000368
|disjoint_from=
+
|anatomical_img_id=FMA:74657
|union_of=
+
|comment=Usage notes: in FMA intergument
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="The dermis, epidermis and hypodermis." [Wikipedia:Integument]
|subset=uberon_slim;;vertebrate_core
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0002199
 +
|is_a=UBERON:0003102
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=integument
 +
|namespace=
 +
|obo_creation_date=
 
|part_of=UBERON:0002416
 
|part_of=UBERON:0002416
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string;;UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string;;UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string;;UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string;;UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string
|is_obsolete=
+
|subset=uberon_slim;;vertebrate_core
|preceded_by=
+
|synonym="dermal system" RELATED [BTO:0000634];;"dermoid system" RELATED [BTO:0000634];;"Hautsystem" RELATED [BTO:0000634];;"integumentum commune" EXACT [FMA:74657, FMA:TA];;"skin" RELATED [];;"tegument" RELATED [BTO:0000634];;"the integument" EXACT [FMA:74657]
 +
|union_of=
 +
|xref=AAO:0000239;;BTO:0000634;;EHDAA2:0001844;;FMA:74657;;galen:Integument;;MESH:A.17.815;;TAO:0000368;;VSAO:0000029;;ZFA:0000368
 
}}
 
}}

Revision as of 09:41, 29 November 2012

Name:integument
Definition:"The dermis, epidermis and hypodermis." [Wikipedia:Integument]
Xrefs:
links:

AAO:0000239
BTO:0000634
EHDAA2:0001844
FMA:74657
galen:Integument
MESH:A.17.815
TAO:0000368
VSAO:0000029

ZFA:0000368
Synonyms: "dermal system" RELATED [BTO:0000634]
"dermoid system" RELATED [BTO:0000634]
"Hautsystem" RELATED [BTO:0000634]
"integumentum commune" EXACT [FMA:74657, FMA:TA]
"skin" RELATED []
"tegument" RELATED [BTO:0000634]
"the integument" EXACT [FMA:74657]
Comments:Usage notes: in FMA intergument
Alt_id: UBERON:FMA_74657-ZFA_0000368
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003102(surface structure)
part_of:UBERON:0002416(integumental system)



Children

is a:FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso)
part of:UBERON:0002072 (hypodermis),UBERON:0002097 (skin of body),UBERON:0010083 (future dermis),UBERON:0011272 (embryonic skin basal layer),UBERON:3000961 (external integument structure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002199 (integument), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Pla2g2f
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Krt74
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Skint11
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_8b0ea39ddfae93ef697c8ee0b5cdf425-, p@chr13:113381448..113381495
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Pla2g2f
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_8b0ea39ddfae93ef697c8ee0b5cdf425p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p1@Skint11
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_8b0ea39ddfae93ef697c8ee0b5cdf425p2@Dlx3
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_961ed09addc5c6652f4870e702679aacp6@Mfsd4
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_961ed09addc5c6652f4870e702679aacp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_961ed09addc5c6652f4870e702679aacp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_961ed09addc5c6652f4870e702679aacp@chr3:90343597..90343613, +
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_961ed09addc5c6652f4870e702679aacp6@Mfsd4
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_961ed09addc5c6652f4870e702679aacp1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_961ed09addc5c6652f4870e702679aacp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_961ed09addc5c6652f4870e702679aacp@chr11:99207849..99207853, -
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_961ed09addc5c6652f4870e702679aacp@chr1:46949894..46949911, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_961ed09addc5c6652f4870e702679aacp@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_961ed09addc5c6652f4870e702679aacp@chr7:97432305..97432311, +
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_961ed09addc5c6652f4870e702679aacp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_961ed09addc5c6652f4870e702679aacp@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_961ed09addc5c6652f4870e702679aacp1@Pnpla5
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_961ed09addc5c6652f4870e702679aacp@chr3:90343597..90343613, +
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_25ea365b38357d62a79efd8ee149e419p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_25ea365b38357d62a79efd8ee149e419p1@Lyg2
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_25ea365b38357d62a79efd8ee149e419p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_25ea365b38357d62a79efd8ee149e419p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_25ea365b38357d62a79efd8ee149e419p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_25ea365b38357d62a79efd8ee149e419p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_25ea365b38357d62a79efd8ee149e419p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_25ea365b38357d62a79efd8ee149e419p1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_25ea365b38357d62a79efd8ee149e419p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_25ea365b38357d62a79efd8ee149e419p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_25ea365b38357d62a79efd8ee149e419p1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_25ea365b38357d62a79efd8ee149e419p2@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_25ea365b38357d62a79efd8ee149e419p25@Myo10
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_25ea365b38357d62a79efd8ee149e419p1@Lyg2
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_25ea365b38357d62a79efd8ee149e419p25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_25ea365b38357d62a79efd8ee149e419p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_25ea365b38357d62a79efd8ee149e419p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_25ea365b38357d62a79efd8ee149e419p2@Lyg2
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep6@Zdhhc21
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr4:111707315..111707319, +
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr7:117436977..117436981, -
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_617f0c191d2ba2c79ad22c4c0c2ff6fep6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr4:111707315..111707319, +
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_617f0c191d2ba2c79ad22c4c0c2ff6fep@chr1:89485356..89485361, +
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_9761685c0b2811dc127fe076c8e511c3p1@Skint5
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_9761685c0b2811dc127fe076c8e511c3p1@Skint5
1.65e-69FFCP PHASE2:Mm9::chr11:99913595..99913606,+#_af8605b327532c752689e489328e6bdcp1@ENSMUST00000136820, p1@uc007lke.1
1.65e-69FFCP PHASE1:Mm9::chr4:135527809..135527823,-#_af8605b327532c752689e489328e6bdcp4@Lypla2
1.65e-69FFCP PHASE1:Mm9::chr15:101770858..101770865,-#_af8605b327532c752689e489328e6bdcp2@Krt79
1.65e-69FFCP PHASE1:Mm9::chr16:56831979..56831988,-#_af8605b327532c752689e489328e6bdcp13@Tmem45a
1.65e-69FFCP PHASE2:Mm9::chr3:93249466..93249478,+#_af8605b327532c752689e489328e6bdcp@chr3:93249466..93249478, +
1.65e-69FFCP PHASE1:Mm9::chr15:12444430..12444439,-#_af8605b327532c752689e489328e6bdcp@chr15:12444430..12444439, -
1.65e-69FFCP PHASE1:Mm9::chr3:93248889..93248897,+#_af8605b327532c752689e489328e6bdc+, p@chr3:93248889..93248897
1.65e-69FFCP PHASE1:Mm9::chr5:81472249..81472294,+#_af8605b327532c752689e489328e6bdcp@chr5:81472249..81472294, +
1.65e-69FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_af8605b327532c752689e489328e6bdcp1@Otop2
1.65e-69FFCP PHASE2:Mm9::chr15:12444430..12444439,-#_af8605b327532c752689e489328e6bdcp@chr15:12444430..12444439, -
1.65e-69FFCP PHASE2:Mm9::chr4:144311356..144311370,-#_af8605b327532c752689e489328e6bdcp2@Gm13178
1.65e-69FFCP PHASE2:Mm9::chr11:95086849..95086855,-#_af8605b327532c752689e489328e6bdcp3@ENSMUST00000150818
1.65e-69FFCP PHASE2:Mm9::chr6:144579044..144579056,-#_af8605b327532c752689e489328e6bdcp@chr6:144579044..144579056, -
1.65e-69FFCP PHASE1:Mm9::chr3:93248697..93248704,+#_af8605b327532c752689e489328e6bdcp@chr3:93248697..93248704, +
1.65e-69FFCP PHASE1:Mm9::chr3:93250018..93250027,+#_af8605b327532c752689e489328e6bdcp@chr3:93250018..93250027, +
1.65e-69FFCP PHASE2:Mm9::chr11:99957587..99957593,-#_af8605b327532c752689e489328e6bdcp2@Krt35
1.65e-69FFCP PHASE1:Mm9::chr4:82496602..82496610,-#_af8605b327532c752689e489328e6bdcp8@Zdhhc21
1.65e-69FFCP PHASE1:Mm9::chr3:93249140..93249149,+#_af8605b327532c752689e489328e6bdcp@chr3:93249140..93249149, +
1.65e-69FFCP PHASE2:Mm9::chr6:142831327..142831375,+#_af8605b327532c752689e489328e6bdcp@chr6:142831327..142831375, +
1.65e-69FFCP PHASE2:Mm9::chr3:93247552..93247564,+#_af8605b327532c752689e489328e6bdcp@chr3:93247552..93247564, +
1.65e-69FFCP PHASE1:Mm9::chr6:97778294..97778306,+#_af8605b327532c752689e489328e6bdc+, p@chr6:97778294..97778306
1.65e-69FFCP PHASE1:Mm9::chr11:99957587..99957593,-#_af8605b327532c752689e489328e6bdcp2@Krt35
1.65e-69FFCP PHASE1:Mm9::chr11:115168521..115168541,+#_af8605b327532c752689e489328e6bdcp1@Otop2
1.65e-69FFCP PHASE1:Mm9::chr2:129949046..129949050,+#_af8605b327532c752689e489328e6bdcp2@Tgm6
1.65e-69FFCP PHASE1:Mm9::chr3:93247552..93247564,+#_af8605b327532c752689e489328e6bdcp@chr3:93247552..93247564, +
1.65e-69FFCP PHASE2:Mm9::chr8:63958211..63958219,+#_af8605b327532c752689e489328e6bdcp@chr8:63958211..63958219, +
1.65e-69FFCP PHASE1:Mm9::chr4:57351817..57351823,-#_af8605b327532c752689e489328e6bdcp@chr4:57351817..57351823, -
1.65e-69FFCP PHASE1:Mm9::chr6:142831327..142831375,+#_af8605b327532c752689e489328e6bdcp@chr6:142831327..142831375, +
1.65e-69FFCP PHASE2:Mm9::chr1:46949977..46949981,-#_af8605b327532c752689e489328e6bdcp@chr1:46949977..46949981, -
1.65e-69FFCP PHASE1:Mm9::chr3:93249391..93249400,+#_af8605b327532c752689e489328e6bdcp@chr3:93249391..93249400, +
1.65e-69FFCP PHASE2:Mm9::chr3:93249140..93249149,+#_af8605b327532c752689e489328e6bdcp@chr3:93249140..93249149, +
1.65e-69FFCP PHASE2:Mm9::chr4:57351817..57351823,-#_af8605b327532c752689e489328e6bdcp@chr4:57351817..57351823, -
1.65e-69FFCP PHASE1:Mm9::chr10:82296700..82296710,+#_af8605b327532c752689e489328e6bdcp12@Txnrd1
1.65e-69FFCP PHASE1:Mm9::chr1:192537956..192537958,+#_af8605b327532c752689e489328e6bdc+, p@chr1:192537956..192537958










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical system that protects the body from damage, comprising the skin and its appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Surface structure that is the outer protective covering of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.