UBERON:0002275: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=reticular formation | |name=reticular formation | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002298 | |part_of=UBERON:0002298 | ||
Latest revision as of 17:28, 12 September 2014
| Name: | reticular formation | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Comments: | note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation. | ||
| Alt_id: | UBERON:FMA_77719-ZFA_0000421 | ||
| Subset: | uberon_slim |
200px-Gray701.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0002616(regional part of brain) |
|---|---|
| part_of: | UBERON:0002298(brainstem) |
Children
| is a: | UBERON:0015827 (brainstem reticular formation) |
|---|---|
| part of: | UBERON:0004684 (raphe nuclei) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11645-122D7 (Mouse Neurons - raphe, donor3)
- 11722-123D3 (Mouse Neurons - raphe, donor1)
- 11740-123F3 (Mouse Neurons - raphe, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002275 (reticular formation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:67832482..67832485,+#_b0ee762022f5dd95c828c9805ed79aff | p@chr9:67832482..67832485, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:67832482..67832485,+#_b0ee762022f5dd95c828c9805ed79aff | p@chr9:67832482..67832485, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr11:6372235..6372242,-#_68289ca1ab3a369c25d2ad41beef35b1 | p1@ENSMUST00000175144 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr11:6372235..6372242,-#_68289ca1ab3a369c25d2ad41beef35b1 | p1@ENSMUST00000175144 |
| 3.65e-65 | FFCP PHASE1:Mm9::chr6:77194015..77194026,+#_e53db4426d940beff15411c4d9aa1eb6 | p@chr6:77194015..77194026, + |
| 3.65e-65 | FFCP PHASE2:Mm9::chr6:77194015..77194026,+#_e53db4426d940beff15411c4d9aa1eb6 | p@chr6:77194015..77194026, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:24918331..24918345,+#_2cfb342a91ac558be4c370496fe95632 | p@chr2:24918331..24918345, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:24918331..24918345,+#_2cfb342a91ac558be4c370496fe95632 | p@chr2:24918331..24918345, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:88548978..88548990,-#_3e38ee049baf8a549ff34e7bc0d347d9 | p@chr3:88548978..88548990, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:88548978..88548990,-#_3e38ee049baf8a549ff34e7bc0d347d9 | p@chr3:88548978..88548990, - |
| 7.35e-53 | FFCP PHASE2:Mm9::chr10:10408741..10408754,-#_12a3effe9d877b8618c57f17895f7f2b | p@chr10:10408741..10408754, - |
| 7.35e-53 | FFCP PHASE1:Mm9::chr10:10408741..10408754,-#_12a3effe9d877b8618c57f17895f7f2b | p@chr10:10408741..10408754, - |
| 1.1e-52 | FFCP PHASE1:Mm9::chr3:126639582..126639596,-#_76748ae133ddc61c82060f9c3967f180 | p@chr3:126639582..126639596, - |
| 1.1e-52 | FFCP PHASE2:Mm9::chr3:126639582..126639596,-#_76748ae133ddc61c82060f9c3967f180 | p@chr3:126639582..126639596, - |
| 1.65e-52 | FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_7f6658045d0399269096381ca52902d5 | p@chr12:85023868..85023879, + |
| 1.65e-52 | FFCP PHASE2:Mm9::chr4:57254065..57254072,-#_7f6658045d0399269096381ca52902d5 | p@chr4:57254065..57254072, - |
| 1.65e-52 | FFCP PHASE1:Mm9::chr4:57254065..57254072,-#_7f6658045d0399269096381ca52902d5 | p@chr4:57254065..57254072, - |
| 1.65e-52 | FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_7f6658045d0399269096381ca52902d5 | p@chr12:85023868..85023879, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr7:67121440..67121451, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr1:66486342..66486351, + |
| 2.47e-52 | FFCP PHASE2:Mm9::chr10:6473752..6473760,-#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr10:6473752..6473760, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr7:67121440..67121451, - |
| 2.47e-52 | FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr1:66486342..66486351, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr10:6473752..6473760,-#_273edf2ddc3ef0ea67da3e0730e23395 | p@chr10:6473752..6473760, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr4:57253865..57253876,-#_0779f3de18fd9e2e543738976532f1d7 | p@chr4:57253865..57253876, - |
| 3.69e-52 | FFCP PHASE1:Mm9::chr4:57253865..57253876,-#_0779f3de18fd9e2e543738976532f1d7 | p@chr4:57253865..57253876, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr4:57253877..57253880,-#_0779f3de18fd9e2e543738976532f1d7 | p@chr4:57253877..57253880, - |
| 3.69e-52 | FFCP PHASE1:Mm9::chr4:57253877..57253880,-#_0779f3de18fd9e2e543738976532f1d7 | p@chr4:57253877..57253880, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr14:66893581..66893589,-#_367f20178697a87548317233dc8250e2 | p@chr14:66893581..66893589, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr14:66893581..66893589,-#_367f20178697a87548317233dc8250e2 | p@chr14:66893581..66893589, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr4:134073503..134073512,-#_bfe4b9966bbbd9cbb7114829fcfa9f01 | p@chr4:134073503..134073512, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:66743268..66743289,+#_bfe4b9966bbbd9cbb7114829fcfa9f01 | p@chr1:66743268..66743289, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr4:134073503..134073512,-#_bfe4b9966bbbd9cbb7114829fcfa9f01 | p@chr4:134073503..134073512, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:66743268..66743289,+#_bfe4b9966bbbd9cbb7114829fcfa9f01 | p@chr1:66743268..66743289, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr8:67087900..67087910,-#_705977668225e8f8eac0fcc028a07af1 | p@chr8:67087900..67087910, - |
| 2.33e-44 | FFCP PHASE2:Mm9::chr8:67087900..67087910,-#_705977668225e8f8eac0fcc028a07af1 | p@chr8:67087900..67087910, - |
| 2.33e-44 | FFCP PHASE2:Mm9::chr4:57447275..57447280,+#_705977668225e8f8eac0fcc028a07af1 | p21@Palm2 |
| 2.33e-44 | FFCP PHASE1:Mm9::chr4:57447275..57447280,+#_705977668225e8f8eac0fcc028a07af1 | p21@Palm2 |
| 3.27e-44 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_8de15a93cfdfb4521eca0a08c5d2cbfe | p@chr10:111706834..111706844, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_8de15a93cfdfb4521eca0a08c5d2cbfe | p@chr10:111706834..111706844, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr9:46721556..46721563,+#_8de15a93cfdfb4521eca0a08c5d2cbfe | p5@2900052N01Rik |
| 3.27e-44 | FFCP PHASE1:Mm9::chr9:46721556..46721563,+#_8de15a93cfdfb4521eca0a08c5d2cbfe | p5@2900052N01Rik |
| 4.58e-44 | FFCP PHASE2:Mm9::chr10:6473722..6473734,-#_7b19fee5332c6d2e9780c08de1c60c92 | p@chr10:6473722..6473734, - |
| 4.58e-44 | FFCP PHASE1:Mm9::chr10:6473722..6473734,-#_7b19fee5332c6d2e9780c08de1c60c92 | p@chr10:6473722..6473734, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr9:14438679..14438684,-#_c9f43f324cabb589a0a5e20ace387b94 | p@chr9:14438679..14438684, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr9:14438679..14438684,-#_c9f43f324cabb589a0a5e20ace387b94 | p@chr9:14438679..14438684, - |
| 1.75e-43 | FFCP PHASE1:Mm9::chr4:147732971..147732980,-#_194dedad045bcd9e299ae2f034e037b2 | p@chr4:147732971..147732980, - |
| 1.75e-43 | FFCP PHASE2:Mm9::chr4:147732971..147732980,-#_194dedad045bcd9e299ae2f034e037b2 | p@chr4:147732971..147732980, - |
| 2.45e-43 | FFCP PHASE1:Mm9::chr16:43072307..43072322,+#_4f32aed57fe48baa44961a1c9dbf981a | p@chr16:43072307..43072322, + |
| 2.45e-43 | FFCP PHASE2:Mm9::chr16:43072307..43072322,+#_4f32aed57fe48baa44961a1c9dbf981a | p@chr16:43072307..43072322, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr10:6482651..6482660,-#_33229468c2caedace4048e05fc674203 | p@chr10:6482651..6482660, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr10:6482651..6482660,-#_33229468c2caedace4048e05fc674203 | p@chr10:6482651..6482660, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr2:103659822..103659827,-#_10acdac7b68d68a6c8ee5b363c99555c | p1@ENSMUST00000118421, p1@ENSMUST00000167989 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr12:110796949..110796955,+#_10acdac7b68d68a6c8ee5b363c99555c | p@chr12:110796949..110796955, + |
| 2.66e-39 | FFCP PHASE2:Mm9::chr14:13448641..13448660,-#_10acdac7b68d68a6c8ee5b363c99555c | p@chr14:13448641..13448660, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr12:110796949..110796955,+#_10acdac7b68d68a6c8ee5b363c99555c | p@chr12:110796949..110796955, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr14:13448641..13448660,-#_10acdac7b68d68a6c8ee5b363c99555c | p@chr14:13448641..13448660, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr2:103659822..103659827,-#_10acdac7b68d68a6c8ee5b363c99555c | p1@ENSMUST00000118421, p1@ENSMUST00000167989 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_1e93e35f5193853423e151bb64fae9ae | p19@Rgs8 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr16:43072335..43072346,+#_1e93e35f5193853423e151bb64fae9ae | p@chr16:43072335..43072346, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr5:135039704..135039724,-#_1e93e35f5193853423e151bb64fae9ae | p@chr5:135039704..135039724, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr5:135039704..135039724,-#_1e93e35f5193853423e151bb64fae9ae | p@chr5:135039704..135039724, - |
| 4.15e-39 | FFCP PHASE1:Mm9::chr16:43072335..43072346,+#_1e93e35f5193853423e151bb64fae9ae | p@chr16:43072335..43072346, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_1e93e35f5193853423e151bb64fae9ae | p19@Rgs8 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr2:90730407..90730420,+#_1e93e35f5193853423e151bb64fae9ae | p@chr2:90730407..90730420, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr2:90730407..90730420,+#_1e93e35f5193853423e151bb64fae9ae | p@chr2:90730407..90730420, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr10:77867856..77867866,-#_4b57bab93d80a01fd3e2305c2f1de893 | p@chr10:77867856..77867866, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr10:77867856..77867866,-#_4b57bab93d80a01fd3e2305c2f1de893 | p@chr10:77867856..77867866, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr16:89818560..89818572,-#_4b57bab93d80a01fd3e2305c2f1de893 | p17@Tiam1 |
| 1.17e-38 | FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_4b57bab93d80a01fd3e2305c2f1de893 | p@chr7:6659121..6659133, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr16:89818560..89818572,-#_4b57bab93d80a01fd3e2305c2f1de893 | p17@Tiam1 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_4b57bab93d80a01fd3e2305c2f1de893 | p@chr7:6659121..6659133, - |
| 2.09e-38 | FFCP PHASE2:Mm9::chr6:48398099..48398121,+#_9f34578fce214e86b033a5cd6bebc9fb | p2@LOC100505089, p2@Sspo |
| 2.09e-38 | FFCP PHASE1:Mm9::chr6:48398099..48398121,+#_9f34578fce214e86b033a5cd6bebc9fb | p2@LOC100505089, p2@Sspo |
| 8.86e-38 | FFCP PHASE2:Mm9::chr4:47004694..47004703,-#_2a5ab6d9bb76aed789410bdc74760646 | p8@Gabbr2 |
| 8.86e-38 | FFCP PHASE1:Mm9::chr4:47004694..47004703,-#_2a5ab6d9bb76aed789410bdc74760646 | p8@Gabbr2 |
| 1.18e-37 | FFCP PHASE2:Mm9::chr2:177853871..177853888,+#_dd5f01a012d61c84bbbd13e3f513ae20 | p18@Phactr3 |
| 1.18e-37 | FFCP PHASE1:Mm9::chr2:177853871..177853888,+#_dd5f01a012d61c84bbbd13e3f513ae20 | p18@Phactr3 |
| 2.1e-37 | FFCP PHASE1:Mm9::chr4:147588847..147588858,-#_434cec502fe65fff2fc52915ba072e37 | p@chr4:147588847..147588858, - |
| 2.1e-37 | FFCP PHASE2:Mm9::chr4:147588847..147588858,-#_434cec502fe65fff2fc52915ba072e37 | p@chr4:147588847..147588858, - |
| 3.72e-37 | FFCP PHASE2:Mm9::chr2:70439780..70439819,+#_0c4a3cc964b79cf155361424dcd866ca | p@chr2:70439780..70439819, + |
| 3.72e-37 | FFCP PHASE1:Mm9::chr2:70439780..70439819,+#_0c4a3cc964b79cf155361424dcd866ca | p@chr2:70439780..70439819, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_5815df2f8062976dd43262ca4a0078e5 | p@chr19:40804786..40804795, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_5815df2f8062976dd43262ca4a0078e5 | p@chr19:40804786..40804795, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr11:68505408..68505413,+#_5815df2f8062976dd43262ca4a0078e5 | p8@Myh10 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr11:68505408..68505413,+#_5815df2f8062976dd43262ca4a0078e5 | p8@Myh10 |
| 4.74e-34 | FFCP PHASE1:Mm9::chr5:31441248..31441260,-#_51247034391a85e034f2180cee513fa2 | p1@Ucn |
| 4.74e-34 | FFCP PHASE2:Mm9::chr2:102621960..102621969,+#_51247034391a85e034f2180cee513fa2 | p@chr2:102621960..102621969, + |
| 4.74e-34 | FFCP PHASE1:Mm9::chr2:102621960..102621969,+#_51247034391a85e034f2180cee513fa2 | p@chr2:102621960..102621969, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr5:31441248..31441260,-#_51247034391a85e034f2180cee513fa2 | p1@Ucn |
| 1.31e-33 | FFCP PHASE1:Mm9::chr7:116903722..116903727,-#_f49da704a25c7bb63a62874814757f72 | p@chr7:116903722..116903727, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr14:31438329..31438344,-#_f49da704a25c7bb63a62874814757f72 | p@chr14:31438329..31438344, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_f49da704a25c7bb63a62874814757f72 | p@chr15:59373755..59373758, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_f49da704a25c7bb63a62874814757f72 | p@chr15:59373755..59373758, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr14:31438329..31438344,-#_f49da704a25c7bb63a62874814757f72 | p@chr14:31438329..31438344, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr7:116903722..116903727,-#_f49da704a25c7bb63a62874814757f72 | p@chr7:116903722..116903727, - |
| 2.18e-33 | FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_e690a391cbb55e9f9db476eb1da5ef0b | p@chr14:54813640..54813649, + |
| 2.18e-33 | FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_e690a391cbb55e9f9db476eb1da5ef0b | p@chr14:54813640..54813649, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr18:62483890..62483902,+#_7b8be4c6a266daaa6e40d5883de640ee | p3@Htr4 |
| 7.68e-33 | FFCP PHASE2:Mm9::chr19:55969998..55970001,+#_7b8be4c6a266daaa6e40d5883de640ee | p40@Tcf7l2 |
