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UBERON:0002370

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Name:thymus
Definition:"Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
Xrefs:
links:

AAO:0010548
BTO:0001374
EFO:0000860
EHDAA:9119
EHDAA2:0002017
EMAPA:18768
EV:0100138
FMA:9607
GAID:464
[1]
MA:0000142
MAT:0000080
MESH:A.06.407.850
MIAA:0000080
ncithesaurus:Thymus_Gland
OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
SCTID:118507000
TAO:0001078
VHOG:0000253
XAO:0000163

ZFA:0001078
Synonyms: "thymus gland" EXACT []
Comments:check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
Alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0002368(endocrine gland),UBERON:0004177(hemopoietic organ),UBERON:0005057(immune organ),UBERON:0005058(hemolymphoid system gland)
develops_from:UBERON:0005562(thymus primordium)
part_of:UBERON:0000949(endocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0009113(thymic region)



Children

derives from:FF:0010027 (thymus - adult human sample),FF:0010043 (human thymus - fetal sample),FF:0011280 (mouse thymus- neonate N02 sample),FF:0011304 (mouse thymus- neonate N03 sample),FF:0011329 (mouse thymus- adult sample),FF:0011336 (mouse thymus- embryo E14 sample),FF:0011346 (mouse thymus- embryo E15 sample),FF:0011355 (mouse thymus- embryo E16 sample),FF:0011366 (mouse thymus- embryo E17 sample),FF:0011401 (mouse thymus- neonate N06 sample),FF:0011407 (mouse thymus- neonate N07 sample),FF:0011413 (mouse thymus- neonate N10 sample),FF:0011426 (mouse thymus- neonate N20 sample),FF:0011496 (mouse thymus- neonate N25 sample),FF:0011497 (mouse thymus- neonate N30 sample),FF:0011516 (mouse thymus- embryo E18 sample),FF:0101455 (thymic carcinoma cell sample)
part of:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000893 (thymocyte),CL:0000894 (DN1 thymic pro-T cell),CL:0002293 (epithelial cell of thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002370 (thymus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
6.94e-147FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_462f201a736866e4e28cae941b0a00fbp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
6.94e-147FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_462f201a736866e4e28cae941b0a00fbp3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
8.91e-111FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_7cd47fa57bab426debb6602a56d5f41fp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
8.91e-111FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_7cd47fa57bab426debb6602a56d5f41fp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
1.55e-98FFCP PHASE1:Hg19::chr10:11486829..11486836,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:11486829..11486836, +
1.55e-98FFCP PHASE1:Hg19::chr10:11486877..11486886,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:11486877..11486886, +
1.55e-98FFCP PHASE1:Hg19::chr10:115022988..115023001,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115022988..115023001, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023005..115023015,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023005..115023015, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023055..115023072,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023055..115023072, +
1.55e-98FFCP PHASE1:Hg19::chr10:115023094..115023106,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr10:115023094..115023106, +
1.55e-98FFCP PHASE1:Hg19::chr10:26726728..26726731,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p17@APBB1IP
1.55e-98FFCP PHASE1:Hg19::chr10:72542272..72542281,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p6@C10orf27
1.55e-98FFCP PHASE1:Hg19::chr11:36589389..36589398,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr11:36589389..36589398, -
1.55e-98FFCP PHASE1:Hg19::chr11:36622593..36622605,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr11:36622593..36622605, +
1.55e-98FFCP PHASE1:Hg19::chr11:6953654..6953661,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p5@ZNF215
1.55e-98FFCP PHASE1:Hg19::chr11:8954087..8954092,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@AB527792
1.55e-98FFCP PHASE1:Hg19::chr12:123559708..123559720,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123559708..123559720, -
1.55e-98FFCP PHASE1:Hg19::chr12:123559773..123559784,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123559773..123559784, -
1.55e-98FFCP PHASE1:Hg19::chr12:123560608..123560615,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p24@PITPNM2
1.55e-98FFCP PHASE1:Hg19::chr12:123560793..123560802,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123560793..123560802, +
1.55e-98FFCP PHASE1:Hg19::chr12:123607146..123607168,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123607146..123607168, -
1.55e-98FFCP PHASE1:Hg19::chr12:123627753..123627760,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123627753..123627760, +
1.55e-98FFCP PHASE1:Hg19::chr12:123634449..123634460,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p25@PITPNM2
1.55e-98FFCP PHASE1:Hg19::chr12:123636839..123636885,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:123636839..123636885, -
1.55e-98FFCP PHASE1:Hg19::chr12:133413547..133413557,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p13@POLE
1.55e-98FFCP PHASE1:Hg19::chr12:133414662..133414671,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:133414662..133414671, -
1.55e-98FFCP PHASE1:Hg19::chr12:47205180..47205187,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:47205180..47205187, +
1.55e-98FFCP PHASE1:Hg19::chr12:48225126..48225164,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
1.55e-98FFCP PHASE1:Hg19::chr12:48227243..48227269,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:48227243..48227269, +
1.55e-98FFCP PHASE1:Hg19::chr12:59432175..59432191,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr12:59432175..59432191, +
1.55e-98FFCP PHASE1:Hg19::chr13:99628323..99628332,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628323..99628332, -
1.55e-98FFCP PHASE1:Hg19::chr13:99628347..99628352,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628347..99628352, -
1.55e-98FFCP PHASE1:Hg19::chr13:99628369..99628374,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628369..99628374, -
1.55e-98FFCP PHASE1:Hg19::chr13:99628388..99628399,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr13:99628388..99628399, -
1.55e-98FFCP PHASE1:Hg19::chr14:22942319..22942322,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@uc001wec.2
1.55e-98FFCP PHASE1:Hg19::chr14:98229095..98229108,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@ENST00000555187
1.55e-98FFCP PHASE1:Hg19::chr15:56940722..56940731,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:56940722..56940731, +
1.55e-98FFCP PHASE1:Hg19::chr15:56940732..56940741,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:56940732..56940741, +
1.55e-98FFCP PHASE1:Hg19::chr15:57017749..57017755,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:57017749..57017755, -
1.55e-98FFCP PHASE1:Hg19::chr15:58069384..58069408,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069384..58069408, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069582..58069594,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069582..58069594, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069597..58069604,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069597..58069604, +
1.55e-98FFCP PHASE1:Hg19::chr15:58069758..58069762,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58069758..58069762, +
1.55e-98FFCP PHASE1:Hg19::chr15:58920068..58920073,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:58920068..58920073, -
1.55e-98FFCP PHASE1:Hg19::chr15:60131313..60131324,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131313..60131324, -
1.55e-98FFCP PHASE1:Hg19::chr15:60131337..60131352,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131337..60131352, -
1.55e-98FFCP PHASE1:Hg19::chr15:60131355..60131365,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:60131355..60131365, -
1.55e-98FFCP PHASE1:Hg19::chr15:99071828..99071840,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr15:99071828..99071840, +
1.55e-98FFCP PHASE1:Hg19::chr16:49633750..49633778,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr16:49633750..49633778, -
1.55e-98FFCP PHASE1:Hg19::chr16:74359040..74359071,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr16:74359040..74359071, +
1.55e-98FFCP PHASE1:Hg19::chr17:4090402..4090406,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr17:4090402..4090406, -
1.55e-98FFCP PHASE1:Hg19::chr17:76274572..76274581,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@ENST00000374945
1.55e-98FFCP PHASE1:Hg19::chr17:76274646..76274658,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p2@ENST00000374945
1.55e-98FFCP PHASE1:Hg19::chr17:80866179..80866188,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr17:80866179..80866188, +
1.55e-98FFCP PHASE1:Hg19::chr18:13437980..13437986,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr18:13437980..13437986, +
1.55e-98FFCP PHASE1:Hg19::chr19:28877072..28877084,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr19:28877072..28877084, -
1.55e-98FFCP PHASE1:Hg19::chr1:158170478..158170491,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158170478..158170491, -
1.55e-98FFCP PHASE1:Hg19::chr1:158226030..158226041,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158226030..158226041, +
1.55e-98FFCP PHASE1:Hg19::chr1:158259849..158259854,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p11@CD1C
1.55e-98FFCP PHASE1:Hg19::chr1:158260453..158260459,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158260453..158260459, -
1.55e-98FFCP PHASE1:Hg19::chr1:158260649..158260652,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p13@CD1C
1.55e-98FFCP PHASE1:Hg19::chr1:158301280..158301298,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158301280..158301298, +
1.55e-98FFCP PHASE1:Hg19::chr1:158303678..158303720,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158303678..158303720, -
1.55e-98FFCP PHASE1:Hg19::chr1:158332631..158332640,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:158332631..158332640, +
1.55e-98FFCP PHASE1:Hg19::chr1:158334207..158334219,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p1@AK128347
1.55e-98FFCP PHASE1:Hg19::chr1:160643269..160643276,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p5@ENST00000443928
1.55e-98FFCP PHASE1:Hg19::chr1:160643289..160643296,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p4@ENST00000443928
1.55e-98FFCP PHASE1:Hg19::chr1:194245598..194245600,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:194245598..194245600, -
1.55e-98FFCP PHASE1:Hg19::chr1:199026759..199026762,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:199026759..199026762, +
1.55e-98FFCP PHASE1:Hg19::chr1:200500161..200500173,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:200500161..200500173, -
1.55e-98FFCP PHASE1:Hg19::chr1:204494413..204494420,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p17@MDM4
1.55e-98FFCP PHASE1:Hg19::chr1:204494427..204494436,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p15@MDM4
1.55e-98FFCP PHASE1:Hg19::chr1:204507243..204507252,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p19@MDM4
1.55e-98FFCP PHASE1:Hg19::chr1:2084380..2084413,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:2084380..2084413, -
1.55e-98FFCP PHASE1:Hg19::chr1:26320241..26320248,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:26320241..26320248, -
1.55e-98FFCP PHASE1:Hg19::chr1:32314477..32314482,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:32314477..32314482, +
1.55e-98FFCP PHASE1:Hg19::chr1:44035057..44035068,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:44035057..44035068, +
1.55e-98FFCP PHASE1:Hg19::chr1:44035233..44035242,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:44035233..44035242, +
1.55e-98FFCP PHASE1:Hg19::chr1:55776022..55776029,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:55776022..55776029, -
1.55e-98FFCP PHASE1:Hg19::chr1:55776031..55776038,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr1:55776031..55776038, -
1.55e-98FFCP PHASE1:Hg19::chr20:30272266..30272271,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:30272266..30272271, -
1.55e-98FFCP PHASE1:Hg19::chr20:58830665..58830675,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830665..58830675, +
1.55e-98FFCP PHASE1:Hg19::chr20:58830799..58830808,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830799..58830808, +
1.55e-98FFCP PHASE1:Hg19::chr20:58830811..58830825,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830811..58830825, +
1.55e-98FFCP PHASE1:Hg19::chr20:58830826..58830835,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58830826..58830835, +
1.55e-98FFCP PHASE1:Hg19::chr20:58833004..58833011,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr20:58833004..58833011, +
1.55e-98FFCP PHASE1:Hg19::chr22:48475770..48475779,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr22:48475770..48475779, -
1.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE1:Hg19::chr2:227771044..227771054,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p9@RHBDD1
1.55e-98FFCP PHASE1:Hg19::chr2:227771357..227771363,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p10@RHBDD1
1.55e-98FFCP PHASE1:Hg19::chr2:233102726..233102734,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:233102726..233102734, +
1.55e-98FFCP PHASE1:Hg19::chr2:233184654..233184661,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:233184654..233184661, -
1.55e-98FFCP PHASE1:Hg19::chr2:242080265..242080277,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p20@PASK
1.55e-98FFCP PHASE1:Hg19::chr2:57846504..57846542,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:57846504..57846542, +
1.55e-98FFCP PHASE1:Hg19::chr2:57926329..57926337,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:57926329..57926337, -
1.55e-98FFCP PHASE1:Hg19::chr2:86992669..86992684,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p8@RMND5A
1.55e-98FFCP PHASE1:Hg19::chr2:86998329..86998374,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p16@RMND5A
1.55e-98FFCP PHASE1:Hg19::chr2:87017428..87017437,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:87017428..87017437, +
1.55e-98FFCP PHASE1:Hg19::chr2:87018380..87018390,-#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p6@CD8A
1.55e-98FFCP PHASE1:Hg19::chr2:87018900..87018905,+#_d30bbbcd0cbe6f8d75adf61a5e3f4b61p@chr2:87018900..87018905, +

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