Personal tools

UBERON:0002385: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002385 |name=muscle tissue |namespace= |def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourc...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0000383;;UBERON:0001015
|part_of=UBERON:0000383;;UBERON:0001015
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:16, 15 June 2012

Name:muscle tissue
Definition:"Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue]
Xrefs:
links:

AAO:0000306
AEO:0000122
EHDAA2:0003122
FMA:9641
galen:MuscleTissue
MA:0002437
MESH:A.02.633
ncithesaurus:Muscle_Tissue

SCTID:91727004
Synonyms: "muscle tissue" EXACT SENSU []
"portion of muscle tissue" EXACT [FMA:9641]
"textus muscularis" EXACT []
Comments:Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach.
Alt_id: UBERON:FMA_9641-MA_0002437
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000479(tissue),UBERON:0004120(mesoderm-derived structure)
disjoint_from:UBERON:0003714(neural tissue)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0000383(musculature of body),UBERON:0001015(musculature)



Children

is a:UBERON:0001135 (smooth muscle tissue),UBERON:0002036 (striated muscle tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002385 (muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60p@chrX:65748600..65748616, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03p@chrX:160838787..160838800, +
1.23e-45FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720p@chr6:53359400..53359406, +
1.23e-45FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720p@chr6:53359400..53359406, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39dp4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39dp4@Gpr39
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287p@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287p@chrX:160840025..160840037, +
4.49e-37FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1p2@LRRC17
4.49e-37FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1p2@LRRC17
7.76e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383p@chr9:35685631..35685657, +
7.76e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383p@chr9:35685631..35685657, +
1.55e-35FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094p8@ARHGAP22
1.55e-35FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094p8@ARHGAP22
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441p11@Fam198b
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441p11@Fam198b
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33p7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33p7@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2p11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2p11@Gpr39
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300p@chrX:160839768..160839780, +
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbbp8@Gpr39
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbbp8@Gpr39
2.4e-34FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9p4@ARHGAP22
2.4e-34FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9p4@ARHGAP22
4.34e-34FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761p1@LRRC17
4.34e-34FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761p1@LRRC17
1.01e-33FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5p@chr11:102661517..102661541, -
1.01e-33FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5p@chr11:102661517..102661541, -
3.36e-33FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115p@chr4:74703497..74703511, +
3.36e-33FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115p@chr4:74703497..74703511, +
9.96e-33FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973ep@chr9:35684475..35684520, +
9.96e-33FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973ep@chr9:35684475..35684520, +
1.11e-32FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06p@chr4:7846444..7846449, -
1.11e-32FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06p@chr4:7846444..7846449, -
1.38e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8p@chr9:35689148..35689192, +
1.38e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8p@chr9:35689148..35689192, +
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4p@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4p@chr7:96658543..96658553, -
6.63e-32FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1p3@LRRC17
6.63e-32FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1p3@LRRC17
1.03e-31FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77p2@SASH1
1.03e-31FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77p2@SASH1
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3p2@Il6
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9fp@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9fp@chr10:67598037..67598049, -
2.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3bp@chr9:35685445..35685517, +
2.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3bp@chr9:35685445..35685517, +
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eaep@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eaep@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209bp@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209bp@chr18:52678391..52678395, -
4.49e-31FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945p@chr2:134548872..134548879, -
4.49e-31FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945p@chr2:134548872..134548879, -
4.6e-31FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977ap2@CXCL6
4.6e-31FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977ap2@CXCL6
6.22e-31FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668p@chr4:169059590..169059615, +
6.22e-31FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668p@chr4:169059590..169059615, +
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464p@chr6:91222095..91222107, +
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3p9@Kctd10
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3p9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43p6@Gpr39
1.33e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010p1@BDKRB1
1.33e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010p1@BDKRB1
1.34e-30FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7p3@IFI27L2
1.34e-30FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7p3@IFI27L2
1.55e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363p1@CU675118
1.55e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363p1@CU675118
1.72e-30FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bdp2@ELTD1
1.72e-30FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bdp2@ELTD1
6.51e-30FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42p3@CXCL6
6.51e-30FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42p3@CXCL6
7.66e-30FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3ep@chr9:35685273..35685313, +
7.66e-30FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3ep@chr9:35685273..35685313, +
8.47e-30FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280p@chr7:34998469..34998489, -
8.47e-30FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280p@chr7:34998469..34998489, -
8.84e-30FFCP PHASE1:Mm9::chrX:160839338..160839364,+#_3b4a0231815d7955ac369538fa5afd6ap@chrX:160839338..160839364, +
8.84e-30FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_3b4a0231815d7955ac369538fa5afd6ap@chr9:102766842..102766853, +