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UBERON:0002544: Difference between revisions

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|located_in=
|located_in=
|name=digit
|name=digit
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0012140;;UBERON:0012354;;UBERON:5002544
|part_of=UBERON:0012140;;UBERON:0012354;;UBERON:5002544

Latest revision as of 17:33, 12 September 2014

Name:digit
Namespace:FANTOM
Definition:"one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)]
Xrefs:
links:

AAO:0011126
EFO:0000881
FMA:85518
galen:Digit
MA:0000690
MAT:0000285
MIAA:0000285
ncithesaurus:Digit
OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA
SCTID:361367007
VHOG:0000944

XAO:0003032
Synonyms: "limb digit" EXACT [MA:0000690]
Comments:todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution].
Alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005881(limb outgrowth)
part_of:UBERON:0012140(digitopodium region),UBERON:0012354(acropodium region),UBERON:5002544(digit plus metapodial segment)



Children

part of:UBERON:0009551 (distal segment of digit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002544 (digit), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results