UBERON:0002757: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=regional part of epithalamus | |name=regional part of epithalamus | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001899 | |part_of=UBERON:0001899 | ||
Latest revision as of 17:34, 12 September 2014
| Name: | regional part of epithalamus | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical structure of brain of epithalamus" EXACT [OBOL:automatic] "biological structure of brain of epithalamus" EXACT [OBOL:automatic] "brain anatomical structure of epithalamus" EXACT [OBOL:automatic] "brain biological structure of epithalamus" EXACT [OBOL:automatic] "epithalamus anatomical structure of brain" EXACT [OBOL:automatic] "epithalamus biological structure of brain" EXACT [OBOL:automatic] "epithalamus brain anatomical structure" EXACT [OBOL:automatic] "epithalamus brain biological structure" EXACT [OBOL:automatic] "epithalamus neuraxis segment" EXACT [OBOL:automatic] "epithalamus regional part of brain" EXACT [OBOL:automatic] "epithalamus segment" EXACT [FMA:62013] "epithalamus segment of brain" EXACT [OBOL:automatic] "neuraxis segment of epithalamus" EXACT [OBOL:automatic] "regional part of brain of epithalamus" EXACT [OBOL:automatic] "segment of brain of epithalamus" EXACT [OBOL:automatic] "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] | ||
| Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon) |
|---|---|
| part_of: | UBERON:0001899(epithalamus) |
Children
| is a: | UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067951..18067954, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17141934..17141935, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99860883..99860921, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135474173..135474185, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952412..54952416, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17040158..17040170, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbe | p6@FRMPD1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr14:49512240..49512248, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135515957..135515964, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:45782019..45782028, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_9fff67266e304a13f2133c4d8e21ddbe | p17@FMN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:88661694..88661709, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18040537..18040547, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:139938385..139938390, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135499228..135499260, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:52650530..52650533, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473472..135473477, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000414895 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9202487..9202498, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:4224059..4224062, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@PRR16 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041194..18041197, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbe | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbe | p8@SLC5A7 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:72297717..72297725, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9178350..9178369, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr4:1188439..1188454, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504314..135504320, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbe | p4@ENST00000439998 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18036005..18036011, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:57914399..57914402,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57914399..57914402, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:51808960..51808964, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:6956383..6956390,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:6956383..6956390, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:107545606..107545631, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_9fff67266e304a13f2133c4d8e21ddbe | p5@AANAT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473876..135473885, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:72297717..72297725, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr5:136699666..136699696, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_9fff67266e304a13f2133c4d8e21ddbe | p32@DMD |
| 3.29e-195 | FFCP PHASE1:Hg19::chr14:55282406..55282415,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr14:55282406..55282415, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135521466..135521470, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:50898098..50898107, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952420..54952425, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473983..135473986, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:87751918..87751928, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:116127086..116127103, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:120842768..120842790, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:45782019..45782028, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:18066392..18066397, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18041244..18041266, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_9fff67266e304a13f2133c4d8e21ddbe | p22@TUBA1C |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18063669..18063678, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:240177602..240177607,+#_9fff67266e304a13f2133c4d8e21ddbe | p17@FMN2 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135504337..135504342, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbe | p3@NEUROG1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:204620238..204620253, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr16:51174216..51174239, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:33087873..33087886, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@GNB3 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17064630..17064651, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbe | p2@ENST00000414895 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:129084265..129084288, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbe | p9@PRR16 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbe | p11@SRRM3 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_9fff67266e304a13f2133c4d8e21ddbe | p22@TUBA1C |
| 3.29e-195 | FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067904..18067908, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:57914399..57914402,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:57914399..57914402, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr15:55470984..55471009, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:68306577..68306607, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56963107..56963117, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:87751931..87751947,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:87751931..87751947, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_9fff67266e304a13f2133c4d8e21ddbe | p3@WNT16 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbe | p6@FRMPD1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:108616342..108616384, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135515957..135515964, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr18:56962131..56962138, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr7:9782665..9782674, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_9fff67266e304a13f2133c4d8e21ddbe | p35@DMD |
| 3.29e-195 | FFCP PHASE1:Hg19::chr15:47662877..47662880,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr15:47662877..47662880, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr4:1188439..1188454, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:88661694..88661709, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr11:18067959..18067962, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135499228..135499260, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:54952420..54952425, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr6:33087873..33087886, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr15:55470964..55470974,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr15:55470964..55470974, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr2:17064630..17064651, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr3:128170725..128170735, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr9:37692930..37692936, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135515989..135515991, + |
| 3.29e-195 | FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr8:135473876..135473885, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:99798419..99798422,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr1:99798419..99798422, - |
| 3.29e-195 | FFCP PHASE1:Hg19::chr13:52650541..52650548,-#_9fff67266e304a13f2133c4d8e21ddbe | p@chr13:52650541..52650548, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr12:55422293..55422300,+#_9fff67266e304a13f2133c4d8e21ddbe | p@chr12:55422293..55422300, + |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_9fff67266e304a13f2133c4d8e21ddbe | p8@CAMKMT |
| 3.29e-195 | FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_9fff67266e304a13f2133c4d8e21ddbe | p1@ENST00000414895 |
