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UBERON:0002784

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Name:regional part of diencephalon
Namespace:FANTOM
Definition:"A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62005

NIF_GrossAnatomy:birnlex_1685
Synonyms: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
"anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"between brain anatomical structure of brain" EXACT [OBOL:automatic]
"between brain biological structure of brain" EXACT [OBOL:automatic]
"between brain brain anatomical structure" EXACT [OBOL:automatic]
"between brain brain biological structure" EXACT [OBOL:automatic]
"between brain neuraxis segment" EXACT [OBOL:automatic]
"between brain regional part of brain" EXACT [OBOL:automatic]
"between brain segment of brain" EXACT [OBOL:automatic]
"biological structure of brain of between brain" EXACT [OBOL:automatic]
"biological structure of brain of diencephalon" EXACT [OBOL:automatic]
"biological structure of brain of interbrain" EXACT [OBOL:automatic]
"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of between brain" EXACT [OBOL:automatic]
"brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of interbrain" EXACT [OBOL:automatic]
"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
"brain biological structure of between brain" EXACT [OBOL:automatic]
"brain biological structure of diencephalon" EXACT [OBOL:automatic]
"brain biological structure of interbrain" EXACT [OBOL:automatic]
"brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
"diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"diencephalon biological structure of brain" EXACT [OBOL:automatic]
"diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"diencephalon brain biological structure" EXACT [OBOL:automatic]
"diencephalon neuraxis segment" EXACT [OBOL:automatic]
"diencephalon regional part of brain" EXACT [OBOL:automatic]
"diencephalon segment" EXACT [FMA:62005]
"diencephalon segment of brain" EXACT [OBOL:automatic]
"interbrain anatomical structure of brain" EXACT [OBOL:automatic]
"interbrain biological structure of brain" EXACT [OBOL:automatic]
"interbrain brain anatomical structure" EXACT [OBOL:automatic]
"interbrain brain biological structure" EXACT [OBOL:automatic]
"interbrain neuraxis segment" EXACT [OBOL:automatic]
"interbrain regional part of brain" EXACT [OBOL:automatic]
"interbrain segment of brain" EXACT [OBOL:automatic]
"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"mature diencephalon brain biological structure" EXACT [OBOL:automatic]
"mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
"mature diencephalon regional part of brain" EXACT [OBOL:automatic]
"mature diencephalon segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of between brain" EXACT [OBOL:automatic]
"neuraxis segment of diencephalon" EXACT [OBOL:automatic]
"neuraxis segment of interbrain" EXACT [OBOL:automatic]
"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
"regional part of brain of between brain" EXACT [OBOL:automatic]
"regional part of brain of diencephalon" EXACT [OBOL:automatic]
"regional part of brain of interbrain" EXACT [OBOL:automatic]
"regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of brain of between brain" EXACT [OBOL:automatic]
"segment of brain of diencephalon" EXACT [OBOL:automatic]
"segment of brain of interbrain" EXACT [OBOL:automatic]
"segment of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0002780(regional part of forebrain)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
2.76e-110FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
2.76e-110FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
1.55e-98FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18067951..18067954, -
1.55e-98FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:101038595..101038604, -
1.55e-98FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_d4b612b81135e7d6f100ad68e256a789p7@TULP4
1.55e-98FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_d4b612b81135e7d6f100ad68e256a789p@chr17:55484129..55484139, +
1.55e-98FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18042584..18042593, -
1.55e-98FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99860786..99860791, -
1.55e-98FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_d4b612b81135e7d6f100ad68e256a789p25@SPOCK1
1.55e-98FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr18:56963093..56963105
1.55e-98FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_d4b612b81135e7d6f100ad68e256a789p9@GNB3
1.55e-98FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_d4b612b81135e7d6f100ad68e256a789p11@SRRM3
1.55e-98FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:72297712..72297715, -
1.55e-98FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:92310419..92310432, +
1.55e-98FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_d4b612b81135e7d6f100ad68e256a789p22@TUBA1C
1.55e-98FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:50898098..50898107, -
1.55e-98FFCP PHASE1:Hg19::chr8:135522475..135522486,-#_d4b612b81135e7d6f100ad68e256a789p16@ZFAT
1.55e-98FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18036005..18036011, -
1.55e-98FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_d4b612b81135e7d6f100ad68e256a789p35@DMD
1.55e-98FFCP PHASE1:Hg19::chr2:17064630..17064651,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17064630..17064651, +
1.55e-98FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18041206..18041211, -
1.55e-98FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:100942376..100942381, -
1.55e-98FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_d4b612b81135e7d6f100ad68e256a789p3@NEUROG1
1.55e-98FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_d4b612b81135e7d6f100ad68e256a789p6@FRMPD1
1.55e-98FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:107545606..107545631, -
1.55e-98FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:81859007..81859036, +
1.55e-98FFCP PHASE1:Hg19::chr8:135504405..135504410,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504405..135504410, -
1.55e-98FFCP PHASE1:Hg19::chr11:72297717..72297725,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:72297717..72297725, -
1.55e-98FFCP PHASE2:Hg19::chr2:17064630..17064651,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17064630..17064651, +
1.55e-98FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:92310419..92310432, +
1.55e-98FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952462..54952471, -
1.55e-98FFCP PHASE1:Hg19::chr2:108602341..108602352,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:108602341..108602352, +
1.55e-98FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135474173..135474185, -
1.55e-98FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57914395..57914398, +
1.55e-98FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57975398..57975401, +
1.55e-98FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_d4b612b81135e7d6f100ad68e256a789p@chr15:55470964..55470974, -
1.55e-98FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_d4b612b81135e7d6f100ad68e256a789p4@AANAT
1.55e-98FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_d4b612b81135e7d6f100ad68e256a789p@chr12:99734965..99734976, -
1.55e-98FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_d4b612b81135e7d6f100ad68e256a789p11@CABP1
1.55e-98FFCP PHASE1:Hg19::chr8:87755845..87755852,-#_d4b612b81135e7d6f100ad68e256a789p6@CNGB3
1.55e-98FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952420..54952425, -
1.55e-98FFCP PHASE1:Hg19::chr11:18067904..18067908,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18067904..18067908, -
1.55e-98FFCP PHASE2:Hg19::chr16:51808960..51808964,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr16:51808960..51808964
1.55e-98FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_d4b612b81135e7d6f100ad68e256a789+, p@chr12:60826120..60826127
1.55e-98FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:52650530..52650533, -
1.55e-98FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_d4b612b81135e7d6f100ad68e256a789p@chr7:9782665..9782674, +
1.55e-98FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_d4b612b81135e7d6f100ad68e256a789p22@TUBA1C
1.55e-98FFCP PHASE1:Hg19::chr14:57197193..57197194,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000554597
1.55e-98FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:100942645..100942655, -
1.55e-98FFCP PHASE2:Hg19::chr1:204620238..204620253,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:204620238..204620253, +
1.55e-98FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066399..18066411, -
1.55e-98FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:101038595..101038604, -
1.55e-98FFCP PHASE1:Hg19::chr18:56962131..56962138,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56962131..56962138, -
1.55e-98FFCP PHASE2:Hg19::chr8:135504405..135504410,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504405..135504410, -
1.55e-98FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_d4b612b81135e7d6f100ad68e256a789p38@KCNIP4
1.55e-98FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_d4b612b81135e7d6f100ad68e256a789p2@PLCL2-AS1
1.55e-98FFCP PHASE2:Hg19::chr13:68306577..68306607,+#_d4b612b81135e7d6f100ad68e256a789p@chr13:68306577..68306607, +
1.55e-98FFCP PHASE2:Hg19::chr11:18053180..18053192,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18053180..18053192, -
1.55e-98FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr7:9202487..9202498
1.55e-98FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18040537..18040547, -
1.55e-98FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_d4b612b81135e7d6f100ad68e256a789p3@NEUROG1
1.55e-98FFCP PHASE2:Hg19::chr6:33087873..33087886,-#_d4b612b81135e7d6f100ad68e256a789p@chr6:33087873..33087886, -
1.55e-98FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_d4b612b81135e7d6f100ad68e256a789p9@PRR16
1.55e-98FFCP PHASE2:Hg19::chr8:87755845..87755852,-#_d4b612b81135e7d6f100ad68e256a789p6@CNGB3
1.55e-98FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:55422858..55422866, +
1.55e-98FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:15134610..15134617, +
1.55e-98FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99860786..99860791, -
1.55e-98FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr7:9202487..9202498
1.55e-98FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_d4b612b81135e7d6f100ad68e256a789p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473983..135473986, -
1.55e-98FFCP PHASE1:Hg19::chr20:44991864..44991887,-#_d4b612b81135e7d6f100ad68e256a789p10@SLC35C2
1.55e-98FFCP PHASE2:Hg19::chr5:136328601..136328607,-#_d4b612b81135e7d6f100ad68e256a789p25@SPOCK1
1.55e-98FFCP PHASE2:Hg19::chr7:9178561..9178568,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9178561..9178568, -
1.55e-98FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:204620238..204620253, +
1.55e-98FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18067959..18067962, -
1.55e-98FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:87751918..87751928, -
1.55e-98FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_d4b612b81135e7d6f100ad68e256a789p@chr3:139938385..139938390, +
1.55e-98FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:204667243..204667248, +
1.55e-98FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99860883..99860921, -
1.55e-98FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56963107..56963117, -
1.55e-98FFCP PHASE2:Hg19::chr8:135520309..135520324,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135520309..135520324, -
1.55e-98FFCP PHASE2:Hg19::chr12:99734965..99734976,-#_d4b612b81135e7d6f100ad68e256a789p@chr12:99734965..99734976, -
1.55e-98FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_d4b612b81135e7d6f100ad68e256a789p9@PRR16
1.55e-98FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:72297717..72297725, -
1.55e-98FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:56628524..56628547, -
1.55e-98FFCP PHASE2:Hg19::chr5:135732675..135732680,-#_d4b612b81135e7d6f100ad68e256a789p3@ENST00000514282
1.55e-98FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_d4b612b81135e7d6f100ad68e256a789p4@CHRNB2
1.55e-98FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_d4b612b81135e7d6f100ad68e256a789p21@TUBA1C
1.55e-98FFCP PHASE2:Hg19::chr7:9228468..9228494,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9228468..9228494, -
1.55e-98FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17065916..17065929, +
1.55e-98FFCP PHASE2:Hg19::chr8:135472861..135472868,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr8:135472861..135472868
1.55e-98FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_d4b612b81135e7d6f100ad68e256a789-, p@chr11:18041244..18041266
1.55e-98FFCP PHASE2:Hg19::chr2:48705144..48705150,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:48705144..48705150, +
1.55e-98FFCP PHASE2:Hg19::chr16:18066319..18066337,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066319..18066337, -
1.55e-98FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:100942645..100942655, -
1.55e-98FFCP PHASE1:Hg19::chr9:37692930..37692936,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:37692930..37692936, +
1.55e-98FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135515939..135515941, +
1.55e-98FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000414895
1.55e-98FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_d4b612b81135e7d6f100ad68e256a789p4@ENST00000439998
1.55e-98FFCP PHASE2:Hg19::chr1:45782001..45782009,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:45782001..45782009, +

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