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{{UBERON
{{UBERON
|id=UBERON:0003100
|alt_id=UBERON:XAO_0003005-ZFA_0000303
|name=female organism
|namespace=
|def="Gonochoristic organism that can produce female gametes." [CARO:0000028]
|xref=AAO:0010030;;BILA:0000028;;CARO:0000028;;FBbt:00007011;;FMA:67812;;HAO:0000028;;TAO:0000303;;TGMA:0001839;;XAO:0003005;;ZFA:0000303
|is_a=UBERON:0000468
|synonym="female" RELATED [TAO:0000303];;"female human body" NARROW SENSU [FMA:67812]
|comment=
|comment=
|alt_id=UBERON:XAO_0003005-ZFA_0000303
|disjoint_from=UBERON:0003101
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Gonochoristic organism that can produce female gametes." [CARO:0000028]
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0003101
|has_quality=
|has_quality=
|id=UBERON:0003100
|is_a=UBERON:0000468
|is_obsolete=
|located_in=
|located_in=
|name=female organism
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="female" RELATED [TAO:0000303];;"female human body" NARROW SENSU [FMA:67812]
|union_of=
|xref=AAO:0010030;;BILA:0000028;;CARO:0000028;;FBbt:00007011;;FMA:67812;;HAO:0000028;;TAO:0000303;;TGMA:0001839;;XAO:0003005;;ZFA:0000303
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:female organism
Namespace:FANTOM
Definition:"Gonochoristic organism that can produce female gametes." [CARO:0000028]
Xrefs:
links:

AAO:0010030
BILA:0000028
CARO:0000028
FBbt:00007011
FMA:67812
HAO:0000028
TAO:0000303
TGMA:0001839
XAO:0003005

ZFA:0000303
Synonyms: "female" RELATED [TAO:0000303]
"female human body" NARROW SENSU [FMA:67812]
Alt_id: UBERON:XAO_0003005-ZFA_0000303
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000468(multi-cellular organism)
disjoint_from:UBERON:0003101(male organism)



Children

part of:UBERON:0000474 (female reproductive system),UBERON:0003134 (female reproductive organ),UBERON:0014404 (female anatomical structure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003100 (female organism), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.05e-58FFCP PHASE2:Mm9::chr9:8900409..8900425,+#_4ac010f4303ebeaf7cda8e35369ac992p2@Pgr
5.05e-58FFCP PHASE1:Mm9::chr9:8900409..8900425,+#_4ac010f4303ebeaf7cda8e35369ac992p2@Pgr
2.49e-55FFCP PHASE2:Mm9::chr3:79594253..79594277,-#_523307aa97fa4c429a6ad7545d8c42f6p@chr3:79594253..79594277, -
2.49e-55FFCP PHASE1:Mm9::chr3:79594253..79594277,-#_523307aa97fa4c429a6ad7545d8c42f6p@chr3:79594253..79594277, -
7.31e-54FFCP PHASE2:Mm9::chr10:5636678..5636725,-#_905457cb4453f31f1d04af23bc6e9a79p6@Esr1
7.31e-54FFCP PHASE1:Mm9::chr10:5636678..5636725,-#_905457cb4453f31f1d04af23bc6e9a79p6@Esr1
1.34e-47FFCP PHASE2:Mm9::chr7:107154528..107154533,+#_58fc09d46d3bcb93916ce09e0539f8bep3@Chrdl2
1.34e-47FFCP PHASE1:Mm9::chr7:107154528..107154533,+#_58fc09d46d3bcb93916ce09e0539f8bep3@Chrdl2
2.85e-43FFCP PHASE2:Mm9::chr9:8900490..8900502,+#_7c9f0ddd576d7af5806b3ec21113bd35p4@Pgr
2.85e-43FFCP PHASE1:Mm9::chr9:8900490..8900502,+#_7c9f0ddd576d7af5806b3ec21113bd35p4@Pgr
8.14e-41FFCP PHASE2:Mm9::chr9:8900563..8900574,+#_9367764d5223231dd52e144509b335e9p5@Pgr
8.14e-41FFCP PHASE1:Mm9::chr9:8900563..8900574,+#_9367764d5223231dd52e144509b335e9p5@Pgr
9.54e-41FFCP PHASE2:Mm9::chr14:41844272..41844285,-#_d0006f998fcf957d44da2f12cd264821p@chr14:41844272..41844285, -
9.54e-41FFCP PHASE1:Mm9::chr14:41844272..41844285,-#_d0006f998fcf957d44da2f12cd264821p@chr14:41844272..41844285, -
6.64e-40FFCP PHASE2:Mm9::chr4:88526110..88526132,-#_3137ad7f1ce8186862c3ead25c91209dp1@Ifne
6.64e-40FFCP PHASE2:Mm9::chr9:8752254..8752260,-#_3137ad7f1ce8186862c3ead25c91209dp@chr9:8752254..8752260, -
6.64e-40FFCP PHASE1:Mm9::chr4:88526110..88526132,-#_3137ad7f1ce8186862c3ead25c91209dp1@Ifne
6.64e-40FFCP PHASE2:Mm9::chr6:113860465..113860478,-#_3137ad7f1ce8186862c3ead25c91209dp4@Atp2b2
6.64e-40FFCP PHASE1:Mm9::chr6:113860465..113860478,-#_3137ad7f1ce8186862c3ead25c91209dp4@Atp2b2
6.64e-40FFCP PHASE2:Mm9::chr6:113860479..113860491,-#_3137ad7f1ce8186862c3ead25c91209dp7@Atp2b2
6.64e-40FFCP PHASE1:Mm9::chr9:8752254..8752260,-#_3137ad7f1ce8186862c3ead25c91209dp@chr9:8752254..8752260, -
6.64e-40FFCP PHASE1:Mm9::chr6:113860479..113860491,-#_3137ad7f1ce8186862c3ead25c91209dp7@Atp2b2
5.82e-39FFCP PHASE1:Mm9::chr10:5386949..5386954,-#_b3eb7506d07ca7cee5086af0b17833c8p@chr10:5386949..5386954, -
5.82e-39FFCP PHASE2:Mm9::chr10:5386949..5386954,-#_b3eb7506d07ca7cee5086af0b17833c8p@chr10:5386949..5386954, -
1.7e-38FFCP PHASE1:Mm9::chr10:5636336..5636347,-#_deac6e816dbf14b599d3bebf7c74730cp9@Esr1
1.7e-38FFCP PHASE2:Mm9::chr10:5636336..5636347,-#_deac6e816dbf14b599d3bebf7c74730cp9@Esr1
2.16e-37FFCP PHASE2:Mm9::chr9:8900459..8900489,+#_4063dfd0172c0fee9b0431061edb0d01p1@Pgr
2.16e-37FFCP PHASE1:Mm9::chr9:8900459..8900489,+#_4063dfd0172c0fee9b0431061edb0d01p1@Pgr
5.03e-36FFCP PHASE1:Mm9::chr9:98857712..98857715,-#_d7c0b50cd054daf02457bed21c98b0c4p@chr9:98857712..98857715, -
5.03e-36FFCP PHASE2:Mm9::chr9:98857712..98857715,-#_d7c0b50cd054daf02457bed21c98b0c4p@chr9:98857712..98857715, -
6.65e-36FFCP PHASE2:Mm9::chr10:5634855..5634866,-#_ac6ea344c14edfdefa55f5b8964e6580p@chr10:5634855..5634866, -
6.65e-36FFCP PHASE1:Mm9::chr10:5634855..5634866,-#_ac6ea344c14edfdefa55f5b8964e6580p@chr10:5634855..5634866, -
8.57e-36FFCP PHASE1:Mm9::chr9:8899828..8899855,+#_53881d4301ea5f28694e1afbab250816p3@Pgr
8.57e-36FFCP PHASE2:Mm9::chr9:8899828..8899855,+#_53881d4301ea5f28694e1afbab250816p3@Pgr
1.81e-33FFCP PHASE2:Mm9::chr13:37673077..37673087,+#_c272460f881d5c08148a067a691b1b9dp@chr13:37673077..37673087, +
1.81e-33FFCP PHASE1:Mm9::chr13:37673077..37673087,+#_c272460f881d5c08148a067a691b1b9dp@chr13:37673077..37673087, +
3.34e-33FFCP PHASE2:Mm9::chr10:97030695..97030725,+#_d2c53e32199c0d52936d9790d3fee810p@chr10:97030695..97030725, +
3.34e-33FFCP PHASE1:Mm9::chr10:97030695..97030725,+#_d2c53e32199c0d52936d9790d3fee810p@chr10:97030695..97030725, +
3.07e-32FFCP PHASE1:Mm9::chr18:78259566..78259574,+#_88472cd4f30e11938f9331dede788f1ep@chr18:78259566..78259574, +
3.07e-32FFCP PHASE1:Mm9::chr19:28635465..28635477,-#_88472cd4f30e11938f9331dede788f1ep@chr19:28635465..28635477, -
3.07e-32FFCP PHASE2:Mm9::chr6:113860572..113860579,-#_88472cd4f30e11938f9331dede788f1ep12@Atp2b2
3.07e-32FFCP PHASE1:Mm9::chr3:103705733..103705744,+#_88472cd4f30e11938f9331dede788f1ep9@Ptpn22
3.07e-32FFCP PHASE1:Mm9::chr19:28635507..28635515,-#_88472cd4f30e11938f9331dede788f1ep@chr19:28635507..28635515, -
3.07e-32FFCP PHASE1:Mm9::chr6:113860572..113860579,-#_88472cd4f30e11938f9331dede788f1ep12@Atp2b2
3.07e-32FFCP PHASE1:Mm9::chr10:5484221..5484225,-#_88472cd4f30e11938f9331dede788f1ep@chr10:5484221..5484225, -
3.07e-32FFCP PHASE2:Mm9::chr13:19715202..19715209,+#_88472cd4f30e11938f9331dede788f1ep4@Sfrp4
3.07e-32FFCP PHASE2:Mm9::chr19:28635465..28635477,-#_88472cd4f30e11938f9331dede788f1ep@chr19:28635465..28635477, -
3.07e-32FFCP PHASE2:Mm9::chr10:5484221..5484225,-#_88472cd4f30e11938f9331dede788f1ep@chr10:5484221..5484225, -
3.07e-32FFCP PHASE2:Mm9::chr19:28635507..28635515,-#_88472cd4f30e11938f9331dede788f1ep@chr19:28635507..28635515, -
3.07e-32FFCP PHASE2:Mm9::chr3:103705733..103705744,+#_88472cd4f30e11938f9331dede788f1ep9@Ptpn22
3.07e-32FFCP PHASE1:Mm9::chr13:19715202..19715209,+#_88472cd4f30e11938f9331dede788f1ep4@Sfrp4
3.07e-32FFCP PHASE2:Mm9::chr18:78259566..78259574,+#_88472cd4f30e11938f9331dede788f1ep@chr18:78259566..78259574, +
5.01e-32FFCP PHASE2:Mm9::chr16:32797458..32797463,-#_6f0318cda57f2d12c0dbd28628350ad7p@chr16:32797458..32797463, -
5.01e-32FFCP PHASE1:Mm9::chr16:32797458..32797463,-#_6f0318cda57f2d12c0dbd28628350ad7p@chr16:32797458..32797463, -
6.41e-32FFCP PHASE2:Mm9::chr6:97777273..97777296,+#_353db8343d2946d40f3b5bedc7c26aafp@chr6:97777273..97777296, +
6.41e-32FFCP PHASE1:Mm9::chr6:97777273..97777296,+#_353db8343d2946d40f3b5bedc7c26aafp@chr6:97777273..97777296, +
9.39e-29FFCP PHASE2:Mm9::chr6:48857675..48857680,+#_60bb381a837a18ef4c64d41972927c7bp10@Abp1
9.39e-29FFCP PHASE1:Mm9::chr7:54276659..54276671,+#_60bb381a837a18ef4c64d41972927c7bp@chr7:54276659..54276671, +
9.39e-29FFCP PHASE2:Mm9::chr10:5483083..5483095,-#_60bb381a837a18ef4c64d41972927c7bp@chr10:5483083..5483095, -
9.39e-29FFCP PHASE1:Mm9::chr10:5483083..5483095,-#_60bb381a837a18ef4c64d41972927c7bp@chr10:5483083..5483095, -
9.39e-29FFCP PHASE1:Mm9::chr6:48857675..48857680,+#_60bb381a837a18ef4c64d41972927c7bp10@Abp1
9.39e-29FFCP PHASE2:Mm9::chr7:54276659..54276671,+#_60bb381a837a18ef4c64d41972927c7bp@chr7:54276659..54276671, +
1.59e-28FFCP PHASE1:Mm9::chr7:96675672..96675683,-#_c74e0cf4ad9cd0027ac4dcdaf99cecf2p6@Prss23
1.59e-28FFCP PHASE2:Mm9::chr7:96675672..96675683,-#_c74e0cf4ad9cd0027ac4dcdaf99cecf2p6@Prss23
3.19e-27FFCP PHASE1:Mm9::chr5:36006234..36006252,-#_2267a8828ebf91b8561e59e2dda61df1p@chr5:36006234..36006252, -
3.19e-27FFCP PHASE2:Mm9::chr5:36006234..36006252,-#_2267a8828ebf91b8561e59e2dda61df1p@chr5:36006234..36006252, -
3.36e-26FFCP PHASE1:Mm9::chr3:108692785..108692812,-#_c487624252481e82f5c8b208cf04ef2bp1@Fndc7
3.36e-26FFCP PHASE2:Mm9::chr3:108692785..108692812,-#_c487624252481e82f5c8b208cf04ef2bp1@Fndc7
3.88e-26FFCP PHASE1:Mm9::chr9:50307249..50307269,+#_1eec64b730e09475beca20b7e4d1bc79p@chr9:50307249..50307269, +
3.88e-26FFCP PHASE2:Mm9::chr9:50307249..50307269,+#_1eec64b730e09475beca20b7e4d1bc79p@chr9:50307249..50307269, +
5.07e-26FFCP PHASE1:Mm9::chr6:65094976..65094993,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp4@Hpgds
5.07e-26FFCP PHASE1:Mm9::chr5:87212132..87212143,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr5:87212132..87212143, -
5.07e-26FFCP PHASE2:Mm9::chr19:24200299..24200336,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr19:24200299..24200336, -
5.07e-26FFCP PHASE2:Mm9::chr6:65094976..65094993,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp4@Hpgds
5.07e-26FFCP PHASE1:Mm9::chr2:49577301..49577323,+#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr2:49577301..49577323, +
5.07e-26FFCP PHASE1:Mm9::chr19:24200299..24200336,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr19:24200299..24200336, -
5.07e-26FFCP PHASE2:Mm9::chr5:87212132..87212143,-#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr5:87212132..87212143, -
5.07e-26FFCP PHASE2:Mm9::chr2:49577301..49577323,+#_8e905ca1f35dd80ecc6cd7b6cbaa1eddp@chr2:49577301..49577323, +
5.88e-26FFCP PHASE1:Mm9::chr7:127288800..127288806,-#_5c53c20805d8337ede33fb2f6de16cf3p1@Zp2
5.88e-26FFCP PHASE1:Mm9::chr2:34922534..34922550,-#_5c53c20805d8337ede33fb2f6de16cf3p@chr2:34922534..34922550, -
5.88e-26FFCP PHASE2:Mm9::chr2:34922534..34922550,-#_5c53c20805d8337ede33fb2f6de16cf3p@chr2:34922534..34922550, -
5.88e-26FFCP PHASE2:Mm9::chr7:127288800..127288806,-#_5c53c20805d8337ede33fb2f6de16cf3p1@Zp2
9.98e-26FFCP PHASE2:Mm9::chr9:50314500..50314503,+#_655931297e50e7d2ed5f81662d618e58p@chr9:50314500..50314503, +
9.98e-26FFCP PHASE1:Mm9::chr9:50314500..50314503,+#_655931297e50e7d2ed5f81662d618e58p@chr9:50314500..50314503, +
2.06e-25FFCP PHASE1:Mm9::chr7:96676045..96676058,-#_465d5f0158382a10fc8c601a56219f4bp5@Prss23
2.06e-25FFCP PHASE2:Mm9::chr7:96676045..96676058,-#_465d5f0158382a10fc8c601a56219f4bp5@Prss23
2.31e-25FFCP PHASE2:Mm9::chr10:5527049..5527053,-#_3afb443c62933b04172a0d511b336767p@chr10:5527049..5527053, -
2.31e-25FFCP PHASE1:Mm9::chr10:5527049..5527053,-#_3afb443c62933b04172a0d511b336767p@chr10:5527049..5527053, -
2.91e-25FFCP PHASE2:Mm9::chr10:116587456..116587469,-#_1e0c21594c1982223b8ff05aa57dbbe7p@chr10:116587456..116587469, -
2.91e-25FFCP PHASE1:Mm9::chr10:116587456..116587469,-#_1e0c21594c1982223b8ff05aa57dbbe7p@chr10:116587456..116587469, -
3.66e-25FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_22ef69934c548464b8524bfadee92409p@chr4:35105498..35105509, -
3.66e-25FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_22ef69934c548464b8524bfadee92409p@chr4:35105498..35105509, -
1.04e-24FFCP PHASE1:Mm9::chr6:52190656..52190667,-#_d9fcfd33d01d1e6d9375b489f72f7676p7@Hoxa10
1.04e-24FFCP PHASE2:Mm9::chr6:52190656..52190667,-#_d9fcfd33d01d1e6d9375b489f72f7676p7@Hoxa10
1.15e-24FFCP PHASE2:Mm9::chr11:98561479..98561520,+#_60fdbf5005a12d0f78e9a5f72d1a4e42p@chr11:98561479..98561520, +
1.15e-24FFCP PHASE1:Mm9::chr11:98561479..98561520,+#_60fdbf5005a12d0f78e9a5f72d1a4e42p@chr11:98561479..98561520, +
1.34e-24FFCP PHASE1:Mm9::chr9:103130780..103130787,-#_68df6a80c1f25c94573a966bf2a9ac27p20@Trf
1.34e-24FFCP PHASE2:Mm9::chr11:46564064..46564079,+#_68df6a80c1f25c94573a966bf2a9ac27p2@Havcr1
1.34e-24FFCP PHASE1:Mm9::chrX:138898857..138898863,-#_68df6a80c1f25c94573a966bf2a9ac27p@chrX:138898857..138898863, -
1.34e-24FFCP PHASE1:Mm9::chr2:131680870..131680891,-#_68df6a80c1f25c94573a966bf2a9ac27p@chr2:131680870..131680891, -

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