Personal tools

UBERON:0003314: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003314
|alt_id=
|name=eye mesenchyme
|namespace=
|def=
|xref=EHDAA2:0000485;;EHDAA:2910;;EMAPA:16324;;EMAPA:16673;;EMAPA:17833;;EMAPA:17836;;VHOG:0001084
|is_a=UBERON:0007213;;UBERON:0009891
|synonym="mesenchyme of eye" EXACT [OBOL:automatic]
|comment=todo - change mesenchyme relationships to precursor_of
|comment=todo - change mesenchyme relationships to precursor_of
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0009920
|develops_from=UBERON:0009920
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003314
|is_a=UBERON:0007213 ;;UBERON:0009891 ;;UBERON:0010312
|is_obsolete=
|located_in=
|located_in=
|name=eye mesenchyme
|namespace=
|obo_creation_date=
|part_of=UBERON:0000019
|part_of=UBERON:0000019
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme of eye" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000485;;EHDAA:2910;;EMAPA:16324;;EMAPA:16673;;EMAPA:17833;;EMAPA:17836;;VHOG:0001084
}}
}}

Revision as of 11:23, 12 September 2014

Name:eye mesenchyme
Xrefs:
links:

EHDAA2:0000485
EHDAA:2910
EMAPA:16324
EMAPA:16673
EMAPA:17833
EMAPA:17836

VHOG:0001084
Synonyms: "mesenchyme of eye" EXACT [OBOL:automatic]
Comments:todo - change mesenchyme relationships to precursor_of

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0007213(mesenchyme derived from head neural crest),UBERON:0009891(facial mesenchyme),UBERON:0010312(immature eye)
develops_from:UBERON:0009920(optic neural crest)
part_of:UBERON:0000019(camera-type eye)



Children

is a:UBERON:0006230 (extrinsic ocular pre-muscle mass)
develops from:UBERON:0002203 (vasculature of eye),UBERON:0006230 (extrinsic ocular pre-muscle mass)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003314 (eye mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results