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(Created page with "{{UBERON |id=UBERON:0003408 |name=gland of gut |namespace= |def="A gland that is part of a digestive tract [Obol]." [OBOL:automatic] |xref=EMAPA:18815 |is_a=UBERON:00025...")
 
 
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{{UBERON
 
{{UBERON
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|id=UBERON:0003408
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|alt_id=
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|name=gland of gut
 
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|namespace=
 
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|def="A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
 
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|xref=EMAPA:18815
 
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|is_a=UBERON:0002530;;UBERON:0004119
 
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|synonym="digestive tract gland" EXACT [OBOL:automatic];;"gland of digestive tract" EXACT [OBOL:automatic];;"gland of lower gastrointestinal tract" EXACT [OBOL:automatic];;"gut gland" EXACT [OBOL:automatic];;"lower gastrointestinal tract gland" EXACT [OBOL:automatic]
 
 
|comment=
 
|comment=
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|alt_id=
 
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|disjoint_from=
 
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|union_of=
 
 
|created_by=
 
|created_by=
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|obo_creation_date=
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|def="A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
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|subset=
 
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|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
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|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0003408
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|is_a=UBERON:0002530 ;;UBERON:0013765
 +
|is_obsolete=
 
|located_in=
 
|located_in=
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|name=gland of gut
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|namespace=FANTOM
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|obo_creation_date=
 
|part_of=UBERON:0001555
 
|part_of=UBERON:0001555
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|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 +
|subset=
 +
|synonym="digestive tract gland" EXACT [OBOL:automatic];;"gland of digestive tract" EXACT [OBOL:automatic];;"gland of lower gastrointestinal tract" EXACT [OBOL:automatic];;"gut gland" EXACT [OBOL:automatic];;"lower gastrointestinal tract gland" EXACT [OBOL:automatic]
 +
|union_of=
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|xref=EMAPA:18815
 
}}
 
}}

Latest revision as of 08:39, 12 September 2014

Name:gland of gut
Namespace:FANTOM
Definition:"A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
Xrefs:
links:
EMAPA:18815
Synonyms: "digestive tract gland" EXACT [OBOL:automatic]
"gland of digestive tract" EXACT [OBOL:automatic]
"gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
"gut gland" EXACT [OBOL:automatic]
"lower gastrointestinal tract gland" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0002530(gland),UBERON:0013765(digestive system element)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0000333 (intestinal gland),UBERON:0003294 (gland of foregut),UBERON:0003295 (pharyngeal gland),UBERON:0010047 (oral gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003408 (gland of gut), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
1.66e-65FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_1e7f70c7fdd287bed3ad2ef8214d5c01p4@uc009bpa.1
1.66e-65FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_1e7f70c7fdd287bed3ad2ef8214d5c01p4@uc009bpa.1
1.86e-64FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_a97c8f53a971f57f768155dbac4c10e8p8@uc009bpa.1
1.86e-64FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_a97c8f53a971f57f768155dbac4c10e8p8@uc009bpa.1
8.23e-63FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_cdbd9bfa61e28079da351b63aa126693p1@ENSMUST00000103288, p1@uc009bpl.1
8.23e-63FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_cdbd9bfa61e28079da351b63aa126693p1@ENSMUST00000103288, p1@uc009bpl.1
1.32e-61FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_9dde089d18a4e65d1389b168950c3449p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_9dde089d18a4e65d1389b168950c3449p@chr12:108361918..108361930, -
1.32e-61FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_9dde089d18a4e65d1389b168950c3449p@chr6:41491752..41491776, -
1.32e-61FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_9dde089d18a4e65d1389b168950c3449p@chr12:108361918..108361930, -
2.27e-60FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_9faa3b100e643259057617cf86fdf068p2@ENSMUST00000103283
2.27e-60FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_9faa3b100e643259057617cf86fdf068p2@ENSMUST00000103283
2.83e-60FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_3b2d268fc6e038fc6b1298bf880b33d9p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
2.83e-60FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_3b2d268fc6e038fc6b1298bf880b33d9p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.1e-59FFCP PHASE1:Hg19::chrX:127800673..127800677,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chrX:127800673..127800677, +
1.1e-59FFCP PHASE2:Hg19::chr15:91304387..91304431,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr15:91304387..91304431, +
1.1e-59FFCP PHASE1:Hg19::chrX:129565220..129565223,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chrX:129565220..129565223, +
1.1e-59FFCP PHASE2:Hg19::chr4:142133987..142133994,-#_9a791fe5b9b9a690da5a2878b5fecdbcp15@RNF150
1.1e-59FFCP PHASE2:Hg19::chr15:95746149..95746154,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr15:95746149..95746154, +
1.1e-59FFCP PHASE2:Hg19::chr4:146782922..146782938,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:146782922..146782938, -
1.1e-59FFCP PHASE1:Hg19::chrX:53171146..53171174,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chrX:53171146..53171174, -
1.1e-59FFCP PHASE2:Hg19::chr4:33651567..33651572,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:33651567..33651572, -
1.1e-59FFCP PHASE1:Hg19::chrX:98177758..98177763,+#_9a791fe5b9b9a690da5a2878b5fecdbc+, p@chrX:98177758..98177763
1.1e-59FFCP PHASE2:Hg19::chr4:70858987..70858995,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70858987..70858995, +
1.1e-59FFCP PHASE2:Hg19::chr4:70859008..70859019,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70859008..70859019, +
1.1e-59FFCP PHASE2:Hg19::chr4:70859246..70859275,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70859246..70859275, -
1.1e-59FFCP PHASE2:Hg19::chr4:70861849..70861868,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70861849..70861868, +
1.1e-59FFCP PHASE2:Hg19::chr4:70866621..70866631,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70866621..70866631, -
1.1e-59FFCP PHASE2:Hg19::chr4:70866637..70866642,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70866637..70866642, -
1.1e-59FFCP PHASE2:Hg19::chr4:70866646..70866651,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70866646..70866651, -
1.1e-59FFCP PHASE2:Hg19::chr4:70867977..70867982,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70867977..70867982, +
1.1e-59FFCP PHASE2:Hg19::chr4:70868002..70868008,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868002..70868008, -
1.1e-59FFCP PHASE2:Hg19::chr4:70868036..70868047,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868036..70868047, +
1.1e-59FFCP PHASE2:Hg19::chr4:70868063..70868067,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70868063..70868067, +
1.1e-59FFCP PHASE2:Hg19::chr4:70894345..70894354,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70894345..70894354, +
1.1e-59FFCP PHASE2:Hg19::chr4:70896475..70896477,+#_9a791fe5b9b9a690da5a2878b5fecdbcp2@HTN3
1.1e-59FFCP PHASE2:Hg19::chr4:70898882..70898894,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898882..70898894, +
1.1e-59FFCP PHASE2:Hg19::chr4:70898896..70898917,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898896..70898917, +
1.1e-59FFCP PHASE2:Hg19::chr4:70898918..70898937,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70898918..70898937, +
1.1e-59FFCP PHASE2:Hg19::chr4:70902060..70902081,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70902060..70902081, +
1.1e-59FFCP PHASE2:Hg19::chr4:70902243..70902249,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70902243..70902249, -
1.1e-59FFCP PHASE2:Hg19::chr4:70916611..70916657,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70916611..70916657, +
1.1e-59FFCP PHASE2:Hg19::chr4:70918781..70918818,+#_9a791fe5b9b9a690da5a2878b5fecdbcp3@HTN1
1.1e-59FFCP PHASE2:Hg19::chr4:70921248..70921265,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70921248..70921265, +
1.1e-59FFCP PHASE2:Hg19::chr4:70921269..70921289,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70921269..70921289, +
1.1e-59FFCP PHASE2:Hg19::chr4:70924295..70924307,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70924295..70924307, +
1.1e-59FFCP PHASE2:Hg19::chr4:70924317..70924327,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70924317..70924327, +
1.1e-59FFCP PHASE2:Hg19::chr4:70924328..70924336,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:70924328..70924336, +
1.1e-59FFCP PHASE2:Hg19::chr4:71020030..71020038,+#_9a791fe5b9b9a690da5a2878b5fecdbcp7@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71020045..71020059,+#_9a791fe5b9b9a690da5a2878b5fecdbcp4@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71020077..71020092,+#_9a791fe5b9b9a690da5a2878b5fecdbcp5@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71024179..71024185,+#_9a791fe5b9b9a690da5a2878b5fecdbcp9@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71024344..71024359,+#_9a791fe5b9b9a690da5a2878b5fecdbcp6@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71024386..71024397,+#_9a791fe5b9b9a690da5a2878b5fecdbcp8@C4orf40
1.1e-59FFCP PHASE2:Hg19::chr4:71028409..71028415,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71028409..71028415, +
1.1e-59FFCP PHASE2:Hg19::chr4:71028629..71028648,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71028629..71028648, +
1.1e-59FFCP PHASE2:Hg19::chr4:71028660..71028668,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71028660..71028668, +
1.1e-59FFCP PHASE2:Hg19::chr4:71028882..71028890,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71028882..71028890, +
1.1e-59FFCP PHASE2:Hg19::chr4:71029303..71029312,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71029303..71029312, +
1.1e-59FFCP PHASE2:Hg19::chr4:71029698..71029719,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71029698..71029719, +
1.1e-59FFCP PHASE2:Hg19::chr4:71232526..71232531,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71232526..71232531, +
1.1e-59FFCP PHASE2:Hg19::chr4:71255460..71255465,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255460..71255465, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255494..71255501,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255494..71255501, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255683..71255689,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255683..71255689, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255777..71255788,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255777..71255788, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255816..71255827,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255816..71255827, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255868..71255873,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255868..71255873, +
1.1e-59FFCP PHASE2:Hg19::chr4:71255891..71255902,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255891..71255902, -
1.1e-59FFCP PHASE2:Hg19::chr4:71255895..71255904,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255895..71255904, +
1.1e-59FFCP PHASE2:Hg19::chr4:71255909..71255918,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr4:71255909..71255918, +
1.1e-59FFCP PHASE2:Hg19::chr16:73108040..73108043,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr16:73108040..73108043, +
1.1e-59FFCP PHASE2:Hg19::chr17:66624163..66624180,+#_9a791fe5b9b9a690da5a2878b5fecdbcp2@AL117652
1.1e-59FFCP PHASE2:Hg19::chr17:66624229..66624234,+#_9a791fe5b9b9a690da5a2878b5fecdbcp4@AL117652
1.1e-59FFCP PHASE2:Hg19::chr17:66624238..66624249,+#_9a791fe5b9b9a690da5a2878b5fecdbcp1@AL117652
1.1e-59FFCP PHASE2:Hg19::chr17:66624280..66624292,+#_9a791fe5b9b9a690da5a2878b5fecdbcp3@AL117652
1.1e-59FFCP PHASE2:Hg19::chr5:36237795..36237799,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr5:36237795..36237799, -
1.1e-59FFCP PHASE2:Hg19::chr5:52450586..52450589,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr5:52450586..52450589, -
1.1e-59FFCP PHASE2:Hg19::chr5:66942627..66942643,-#_9a791fe5b9b9a690da5a2878b5fecdbcp1@ENST00000507298
1.1e-59FFCP PHASE2:Hg19::chr17:80849228..80849258,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr17:80849228..80849258, +
1.1e-59FFCP PHASE1:Hg19::chr6:25004699..25004706,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:25004699..25004706, -
1.1e-59FFCP PHASE1:Hg19::chr6:82795636..82795655,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:82795636..82795655, -
1.1e-59FFCP PHASE1:Hg19::chr6:82882487..82882510,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:82882487..82882510, -
1.1e-59FFCP PHASE1:Hg19::chr6:99243504..99243506,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:99243504..99243506, +
1.1e-59FFCP PHASE2:Hg19::chr12:11083291..11083303,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11083291..11083303, -
1.1e-59FFCP PHASE2:Hg19::chr12:11085389..11085397,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:11085389..11085397, +
1.1e-59FFCP PHASE1:Hg19::chr7:109641728..109641729,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr7:109641728..109641729, -
1.1e-59FFCP PHASE1:Hg19::chr7:130066581..130066590,-#_9a791fe5b9b9a690da5a2878b5fecdbcp10@CEP41
1.1e-59FFCP PHASE2:Hg19::chr12:55224189..55224198,+#_9a791fe5b9b9a690da5a2878b5fecdbcp9@MUCL1
1.1e-59FFCP PHASE2:Hg19::chr12:55224312..55224339,+#_9a791fe5b9b9a690da5a2878b5fecdbcp6@MUCL1
1.1e-59FFCP PHASE2:Hg19::chr12:55224381..55224392,+#_9a791fe5b9b9a690da5a2878b5fecdbcp7@MUCL1
1.1e-59FFCP PHASE1:Hg19::chr7:50156988..50156993,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr7:50156988..50156993, +
1.1e-59FFCP PHASE2:Hg19::chr12:68527632..68527634,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr12:68527632..68527634, +
1.1e-59FFCP PHASE2:Hg19::chr18:4264585..4264594,+#_9a791fe5b9b9a690da5a2878b5fecdbcp4@LOC284215
1.1e-59FFCP PHASE2:Hg19::chr6:136765981..136765985,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:136765981..136765985, +
1.1e-59FFCP PHASE2:Hg19::chr6:25004699..25004706,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:25004699..25004706, -
1.1e-59FFCP PHASE2:Hg19::chr6:82795636..82795655,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:82795636..82795655, -
1.1e-59FFCP PHASE2:Hg19::chr6:82882487..82882510,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:82882487..82882510, -
1.1e-59FFCP PHASE2:Hg19::chr6:99243504..99243506,+#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr6:99243504..99243506, +
1.1e-59FFCP PHASE2:Hg19::chr7:109641728..109641729,-#_9a791fe5b9b9a690da5a2878b5fecdbcp@chr7:109641728..109641729, -
1.1e-59FFCP PHASE2:Hg19::chr7:130066581..130066590,-#_9a791fe5b9b9a690da5a2878b5fecdbcp10@CEP41

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