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Revision as of 08:04, 26 June 2012

Name:peripheral lymph node
Definition:"the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes" [MP:0008463]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000029(lymph node)



Children

is a:UBERON:0001097 (axillary lymph node)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 1063-29H9 (accessory axillary lymph node, adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003968 (peripheral lymph node), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr11:5405967..5405985,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr11:5405967..5405985, +
3.07e-86FFCP PHASE1:Mm9::chr4:122604700..122604706,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr4:122604700..122604706, -
3.07e-86FFCP PHASE1:Mm9::chr15:98457111..98457118,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr15:98457111..98457118, +
3.07e-86FFCP PHASE2:Mm9::chr17:37383896..37383899,+#_475652cfb2ae0214a5d9e0cd99ccbb72p2@ENSMUST00000172477
3.07e-86FFCP PHASE2:Mm9::chr11:5405967..5405985,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr11:5405967..5405985, +
3.07e-86FFCP PHASE2:Mm9::chr12:114567506..114567507,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:114567506..114567507, -
3.07e-86FFCP PHASE2:Mm9::chr4:122604700..122604706,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr4:122604700..122604706, -
3.07e-86FFCP PHASE1:Mm9::chr17:37383896..37383899,+#_475652cfb2ae0214a5d9e0cd99ccbb72p2@ENSMUST00000172477
3.07e-86FFCP PHASE2:Mm9::chr12:93042811..93042816,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:93042811..93042816, -
3.07e-86FFCP PHASE1:Mm9::chr12:104978425..104978430,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:104978425..104978430, -
3.07e-86FFCP PHASE2:Mm9::chr15:98457062..98457072,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr15:98457062..98457072, +
3.07e-86FFCP PHASE1:Mm9::chr10:73409774..73409819,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr10:73409774..73409819, +
3.07e-86FFCP PHASE1:Mm9::chr12:114567506..114567507,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:114567506..114567507, -
3.07e-86FFCP PHASE2:Mm9::chr10:73409774..73409819,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr10:73409774..73409819, +
3.07e-86FFCP PHASE1:Mm9::chr8:3918216..3918219,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr8:3918216..3918219, -
3.07e-86FFCP PHASE2:Mm9::chr4:32325858..32325865,+#_475652cfb2ae0214a5d9e0cd99ccbb72p18@Bach2
3.07e-86FFCP PHASE1:Mm9::chr12:93042811..93042816,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:93042811..93042816, -
3.07e-86FFCP PHASE2:Mm9::chr12:104978425..104978430,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr12:104978425..104978430, -
3.07e-86FFCP PHASE2:Mm9::chr15:98457111..98457118,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr15:98457111..98457118, +
3.07e-86FFCP PHASE1:Mm9::chr4:32325858..32325865,+#_475652cfb2ae0214a5d9e0cd99ccbb72p18@Bach2
3.07e-86FFCP PHASE1:Mm9::chr16:19235714..19235723,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr16:19235714..19235723, -
3.07e-86FFCP PHASE2:Mm9::chr16:19235714..19235723,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr16:19235714..19235723, -
3.07e-86FFCP PHASE1:Mm9::chr15:98457062..98457072,+#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr15:98457062..98457072, +
3.07e-86FFCP PHASE2:Mm9::chr8:3918216..3918219,-#_475652cfb2ae0214a5d9e0cd99ccbb72p@chr8:3918216..3918219, -
2.74e-44FFCP PHASE1:Mm9::chr6:127022920..127022928,+#_5bf07a1162f0daa371e49c8ea25ea18fp1@Fgf23
2.74e-44FFCP PHASE2:Mm9::chr15:100610674..100610678,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr15:100610674..100610678, +
2.74e-44FFCP PHASE1:Mm9::chr2:152582794..152582807,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr2:152582794..152582807, +
2.74e-44FFCP PHASE1:Mm9::chr4:130488147..130488154,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr4:130488147..130488154, +
2.74e-44FFCP PHASE2:Mm9::chr2:152582794..152582807,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr2:152582794..152582807, +
2.74e-44FFCP PHASE1:Mm9::chr1:156901987..156901994,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr1:156901987..156901994, -
2.74e-44FFCP PHASE2:Mm9::chr6:129628862..129628871,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr6:129628862..129628871, -
2.74e-44FFCP PHASE2:Mm9::chr6:127022920..127022928,+#_5bf07a1162f0daa371e49c8ea25ea18fp1@Fgf23
2.74e-44FFCP PHASE2:Mm9::chr3:87316559..87316571,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr3:87316559..87316571, -
2.74e-44FFCP PHASE2:Mm9::chr4:130488147..130488154,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr4:130488147..130488154, +
2.74e-44FFCP PHASE1:Mm9::chr15:100610674..100610678,+#_5bf07a1162f0daa371e49c8ea25ea18fp@chr15:100610674..100610678, +
2.74e-44FFCP PHASE1:Mm9::chr6:129628862..129628871,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr6:129628862..129628871, -
2.74e-44FFCP PHASE2:Mm9::chr1:156901987..156901994,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr1:156901987..156901994, -
2.74e-44FFCP PHASE1:Mm9::chr3:87316559..87316571,-#_5bf07a1162f0daa371e49c8ea25ea18fp@chr3:87316559..87316571, -
7.47e-44FFCP PHASE1:Mm9::chrX:13200511..13200521,+#_e5065fb13036c156071ae70b17b24492p@chrX:13200511..13200521, +
7.47e-44FFCP PHASE2:Mm9::chr1:69594451..69594464,-#_e5065fb13036c156071ae70b17b24492p@chr1:69594451..69594464, -
7.47e-44FFCP PHASE2:Mm9::chr17:73460572..73460579,+#_e5065fb13036c156071ae70b17b24492p@chr17:73460572..73460579, +
7.47e-44FFCP PHASE2:Mm9::chrX:13200511..13200521,+#_e5065fb13036c156071ae70b17b24492p@chrX:13200511..13200521, +
7.47e-44FFCP PHASE2:Mm9::chr2:26524291..26524300,-#_e5065fb13036c156071ae70b17b24492p@chr2:26524291..26524300, -
7.47e-44FFCP PHASE1:Mm9::chrX:7157626..7157635,+#_e5065fb13036c156071ae70b17b24492p3@Foxp3
7.47e-44FFCP PHASE2:Mm9::chrX:7157626..7157635,+#_e5065fb13036c156071ae70b17b24492p3@Foxp3
7.47e-44FFCP PHASE2:Mm9::chr1:156901880..156901891,-#_e5065fb13036c156071ae70b17b24492p@chr1:156901880..156901891, -
7.47e-44FFCP PHASE1:Mm9::chr2:26524291..26524300,-#_e5065fb13036c156071ae70b17b24492p@chr2:26524291..26524300, -
7.47e-44FFCP PHASE1:Mm9::chr8:22042143..22042150,-#_e5065fb13036c156071ae70b17b24492p1@Gm15056, p1@LOC100504014
7.47e-44FFCP PHASE1:Mm9::chr2:70769189..70769223,+#_e5065fb13036c156071ae70b17b24492p@chr2:70769189..70769223, +
7.47e-44FFCP PHASE2:Mm9::chr17:73506745..73506750,+#_e5065fb13036c156071ae70b17b24492p@chr17:73506745..73506750, +
7.47e-44FFCP PHASE1:Mm9::chr5:111607677..111607689,-#_e5065fb13036c156071ae70b17b24492p@chr5:111607677..111607689, -
7.47e-44FFCP PHASE1:Mm9::chr17:73460572..73460579,+#_e5065fb13036c156071ae70b17b24492p@chr17:73460572..73460579, +
7.47e-44FFCP PHASE2:Mm9::chr2:70769189..70769223,+#_e5065fb13036c156071ae70b17b24492p@chr2:70769189..70769223, +
7.47e-44FFCP PHASE1:Mm9::chr13:83714297..83714301,+#_e5065fb13036c156071ae70b17b24492p@chr13:83714297..83714301, +
7.47e-44FFCP PHASE2:Mm9::chr13:83714297..83714301,+#_e5065fb13036c156071ae70b17b24492p@chr13:83714297..83714301, +
7.47e-44FFCP PHASE1:Mm9::chr1:69594451..69594464,-#_e5065fb13036c156071ae70b17b24492p@chr1:69594451..69594464, -
7.47e-44FFCP PHASE2:Mm9::chr5:111607677..111607689,-#_e5065fb13036c156071ae70b17b24492p@chr5:111607677..111607689, -
7.47e-44FFCP PHASE2:Mm9::chr8:22042143..22042150,-#_e5065fb13036c156071ae70b17b24492p1@Gm15056, p1@LOC100504014
7.47e-44FFCP PHASE1:Mm9::chr1:156901880..156901891,-#_e5065fb13036c156071ae70b17b24492p@chr1:156901880..156901891, -
7.47e-44FFCP PHASE1:Mm9::chr17:73506745..73506750,+#_e5065fb13036c156071ae70b17b24492p@chr17:73506745..73506750, +
2.87e-30FFCP PHASE2:Mm9::chr3:60276705..60276708,+#_57de94185df0c038d65c572617c19e2ep35@Mbnl1
2.87e-30FFCP PHASE2:Mm9::chr6:43026981..43026982,-#_57de94185df0c038d65c572617c19e2ep@chr6:43026981..43026982, -
2.87e-30FFCP PHASE1:Mm9::chr3:60276705..60276708,+#_57de94185df0c038d65c572617c19e2ep35@Mbnl1
2.87e-30FFCP PHASE2:Mm9::chr1:175421064..175421071,-#_57de94185df0c038d65c572617c19e2ep@chr1:175421064..175421071, -
2.87e-30FFCP PHASE1:Mm9::chr16:19236303..19236306,-#_57de94185df0c038d65c572617c19e2ep@chr16:19236303..19236306, -
2.87e-30FFCP PHASE2:Mm9::chr16:19236303..19236306,-#_57de94185df0c038d65c572617c19e2ep@chr16:19236303..19236306, -
2.87e-30FFCP PHASE1:Mm9::chr9:63685871..63685874,-#_57de94185df0c038d65c572617c19e2ep@chr9:63685871..63685874, -
2.87e-30FFCP PHASE1:Mm9::chr2:153750777..153750817,+#_57de94185df0c038d65c572617c19e2ep@chr2:153750777..153750817, +
2.87e-30FFCP PHASE1:Mm9::chr10:77555495..77555503,-#_57de94185df0c038d65c572617c19e2ep@chr10:77555495..77555503, -
2.87e-30FFCP PHASE1:Mm9::chr14:101862396..101862406,-#_57de94185df0c038d65c572617c19e2ep7@Tbc1d4
2.87e-30FFCP PHASE2:Mm9::chr14:101862396..101862406,-#_57de94185df0c038d65c572617c19e2ep7@Tbc1d4
2.87e-30FFCP PHASE1:Mm9::chr17:75917733..75917762,-#_57de94185df0c038d65c572617c19e2ep@chr17:75917733..75917762, -
2.87e-30FFCP PHASE2:Mm9::chr17:75917733..75917762,-#_57de94185df0c038d65c572617c19e2ep@chr17:75917733..75917762, -
2.87e-30FFCP PHASE1:Mm9::chr1:175421064..175421071,-#_57de94185df0c038d65c572617c19e2ep@chr1:175421064..175421071, -
2.87e-30FFCP PHASE1:Mm9::chr6:43026981..43026982,-#_57de94185df0c038d65c572617c19e2ep@chr6:43026981..43026982, -
2.87e-30FFCP PHASE2:Mm9::chr9:63685871..63685874,-#_57de94185df0c038d65c572617c19e2ep@chr9:63685871..63685874, -
2.87e-30FFCP PHASE2:Mm9::chr2:153750777..153750817,+#_57de94185df0c038d65c572617c19e2ep@chr2:153750777..153750817, +
2.87e-30FFCP PHASE2:Mm9::chr10:77555495..77555503,-#_57de94185df0c038d65c572617c19e2ep@chr10:77555495..77555503, -
5.62e-30FFCP PHASE1:Mm9::chr15:27700724..27700733,+#_d10187f01a680de6bfe9d85dc453ddaap@chr15:27700724..27700733, +
5.62e-30FFCP PHASE1:Mm9::chr1:69595291..69595300,-#_d10187f01a680de6bfe9d85dc453ddaap@chr1:69595291..69595300, -
5.62e-30FFCP PHASE2:Mm9::chr12:3463400..3463409,+#_d10187f01a680de6bfe9d85dc453ddaap@chr12:3463400..3463409, +
5.62e-30FFCP PHASE2:Mm9::chr17:65245146..65245162,+#_d10187f01a680de6bfe9d85dc453ddaap@chr17:65245146..65245162, +
5.62e-30FFCP PHASE1:Mm9::chrX:7156827..7156838,+#_d10187f01a680de6bfe9d85dc453ddaap2@Foxp3
5.62e-30FFCP PHASE2:Mm9::chrX:7156827..7156838,+#_d10187f01a680de6bfe9d85dc453ddaap2@Foxp3
5.62e-30FFCP PHASE2:Mm9::chr15:27700724..27700733,+#_d10187f01a680de6bfe9d85dc453ddaap@chr15:27700724..27700733, +
5.62e-30FFCP PHASE1:Mm9::chr16:18588911..18588925,-#_d10187f01a680de6bfe9d85dc453ddaap@chr16:18588911..18588925, -
5.62e-30FFCP PHASE1:Mm9::chr1:152303107..152303115,-#_d10187f01a680de6bfe9d85dc453ddaap@chr1:152303107..152303115, -
5.62e-30FFCP PHASE1:Mm9::chr12:3463400..3463409,+#_d10187f01a680de6bfe9d85dc453ddaap@chr12:3463400..3463409, +
5.62e-30FFCP PHASE2:Mm9::chr1:69595291..69595300,-#_d10187f01a680de6bfe9d85dc453ddaap@chr1:69595291..69595300, -
5.62e-30FFCP PHASE1:Mm9::chr13:93865596..93865618,+#_d10187f01a680de6bfe9d85dc453ddaap@chr13:93865596..93865618, +
5.62e-30FFCP PHASE2:Mm9::chr13:93865596..93865618,+#_d10187f01a680de6bfe9d85dc453ddaap@chr13:93865596..93865618, +
5.62e-30FFCP PHASE2:Mm9::chr1:152303107..152303115,-#_d10187f01a680de6bfe9d85dc453ddaap@chr1:152303107..152303115, -
5.62e-30FFCP PHASE2:Mm9::chr16:18588911..18588925,-#_d10187f01a680de6bfe9d85dc453ddaap@chr16:18588911..18588925, -
5.62e-30FFCP PHASE1:Mm9::chr5:68157953..68157957,-#_d10187f01a680de6bfe9d85dc453ddaap@chr5:68157953..68157957, -
5.62e-30FFCP PHASE1:Mm9::chr17:65245146..65245162,+#_d10187f01a680de6bfe9d85dc453ddaap@chr17:65245146..65245162, +
5.62e-30FFCP PHASE2:Mm9::chr5:68157953..68157957,-#_d10187f01a680de6bfe9d85dc453ddaap@chr5:68157953..68157957, -
5.62e-30FFCP PHASE2:Mm9::chr10:96058243..96058251,-#_d10187f01a680de6bfe9d85dc453ddaap@chr10:96058243..96058251, -
5.62e-30FFCP PHASE1:Mm9::chr10:96058243..96058251,-#_d10187f01a680de6bfe9d85dc453ddaap@chr10:96058243..96058251, -
1.1e-29FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_cd0d0b58309c5e8b6546457bb1ee606dp@chr16:15705318..15705342, +
1.1e-29FFCP PHASE1:Mm9::chr7:108912031..108912038,+#_cd0d0b58309c5e8b6546457bb1ee606dp9@Clpb