Difference between revisions of "UBERON:0004120"
From FANTOM5_SSTAR
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|def="An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm] | |def="An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm] | ||
|xref= | |xref= | ||
| − | |is_a=UBERON: | + | |is_a=UBERON:0010317 |
|synonym= | |synonym= | ||
|comment=Grouping term for query purposes | |comment=Grouping term for query purposes | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=grouping_class | |subset=grouping_class | ||
| − | |||
|derives_from= | |derives_from= | ||
| − | |develops_from= | + | |develops_from= |
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 08:04, 26 June 2012
| Name: | mesoderm-derived structure |
|---|---|
| Definition: | "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
| is_a: | UBERON:0010317(germ layer / neural crest derived structure) |
|---|
Children
| is a: | UBERON:0000042 (serous membrane),UBERON:0000056 (ureter),UBERON:0000057 (urethra),UBERON:0000074 (renal glomerulus),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000080 (mesonephros),UBERON:0000162 (cloaca),UBERON:0000305 (amnion),UBERON:0000412 (dermal papilla),UBERON:0000415 (artery wall),UBERON:0000946 (cardial valve),UBERON:0000948 (heart),UBERON:0000990 (reproductive system),UBERON:0001103 (diaphragm),UBERON:0001130 (vertebral column),UBERON:0001178 (visceral peritoneum),UBERON:0001235 (adrenal cortex),UBERON:0001236 (adrenal medulla),UBERON:0001255 (urinary bladder),UBERON:0001256 (wall of urinary bladder),UBERON:0001259 (mucosa of urinary bladder),UBERON:0001468 (intervertebral joint),UBERON:0001601 (extra-ocular muscle),UBERON:0001694 (petrous part of temporal bone),UBERON:0001703 (neurocranium),UBERON:0001839 (bony labyrinth),UBERON:0001844 (cochlea),UBERON:0001981 (blood vessel),UBERON:0001992 (papillary layer of dermis),UBERON:0002067 (dermis),UBERON:0002072 (hypodermis),UBERON:0002120 (pronephros),UBERON:0002190 (subcutaneous adipose tissue),UBERON:0002242 (nucleus pulposus),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0002328 (notochord),UBERON:0002331 (umbilical cord),UBERON:0002363 (dura mater),UBERON:0002385 (muscle tissue),UBERON:0002390 (hematopoietic system),UBERON:0002517 (basicranium),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003089 (sclerotome),UBERON:0003112 (olfactory region),UBERON:0003124 (chorion),UBERON:0003220 (metanephric mesenchyme),UBERON:0003422 (mesenchyme of umbilical cord),UBERON:0003688 (omentum)... further results |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10013-101C4 (cervix, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10021-101D3 (placenta, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004120 (mesoderm-derived structure), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.38e-40 | FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_c2e8100d50c0adc4e0eecfbbc08bbdc5 | p1@DNASE1L1 |
| 6.38e-40 | FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_c2e8100d50c0adc4e0eecfbbc08bbdc5 | p1@DNASE1L1 |
| 6.15e-39 | FFCP PHASE2:Hg19::chr1:228270784..228270847,+#_d66f81ef1a968667e6f80ec1a6d2bcf6 | p2@ARF1 |
| 6.15e-39 | FFCP PHASE1:Hg19::chr1:228270784..228270847,+#_d66f81ef1a968667e6f80ec1a6d2bcf6 | p2@ARF1 |
| 9.61e-38 | FFCP PHASE1:Hg19::chr12:54812992..54813035,-#_9a8131e6e6c8af551630285202bc5036 | p1@ITGA5 |
| 9.61e-38 | FFCP PHASE2:Hg19::chr12:54812992..54813035,-#_9a8131e6e6c8af551630285202bc5036 | p1@ITGA5 |
| 1.56e-36 | FFCP PHASE1:Hg19::chr7:143078379..143078454,+#_16a51478e4c3c04587df485fac0085cf | p1@ZYX |
| 1.56e-36 | FFCP PHASE2:Hg19::chr7:143078379..143078454,+#_16a51478e4c3c04587df485fac0085cf | p1@ZYX |
| 2.82e-36 | FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_6241710e33cb19c4d15c2c8faaac20c1 | p6@UBE2D3 |
| 2.82e-36 | FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_6241710e33cb19c4d15c2c8faaac20c1 | p6@UBE2D3 |
| 5.32e-36 | FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_2e8b9808128d4af1e1fb5a7738c444ca | p3@ANPEP |
| 5.32e-36 | FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_2e8b9808128d4af1e1fb5a7738c444ca | p3@ANPEP |
| 8.45e-36 | FFCP PHASE2:Hg19::chr5:180229791..180229829,-#_539cd179c2c4cccd853fe5444cff520b | p1@MGAT1 |
| 8.45e-36 | FFCP PHASE1:Hg19::chr5:180229791..180229829,-#_539cd179c2c4cccd853fe5444cff520b | p1@MGAT1 |
| 1.6e-35 | FFCP PHASE1:Hg19::chr11:504446..504486,-#_fe79a00f66484038e10ad0026e455613 | p4@RNH1 |
| 1.6e-35 | FFCP PHASE2:Hg19::chr11:504446..504486,-#_fe79a00f66484038e10ad0026e455613 | p4@RNH1 |
| 2.85e-35 | FFCP PHASE2:Hg19::chr19:44174330..44174355,-#_de5290ead407ec63da59caa22523d46f | p2@PLAUR |
| 2.85e-35 | FFCP PHASE1:Hg19::chr19:44174330..44174355,-#_de5290ead407ec63da59caa22523d46f | p2@PLAUR |
| 3.37e-35 | FFCP PHASE1:Hg19::chr1:21616690..21616719,-#_386a68fbe2061a840422daae90606a9c | p4@ECE1 |
| 3.37e-35 | FFCP PHASE2:Hg19::chr1:21616690..21616719,-#_386a68fbe2061a840422daae90606a9c | p4@ECE1 |
| 5.03e-35 | FFCP PHASE2:Hg19::chr7:143079458..143079487,+#_3b4b8104986876eead499918606fb6d5 | p4@ZYX |
| 5.03e-35 | FFCP PHASE1:Hg19::chr7:143079458..143079487,+#_3b4b8104986876eead499918606fb6d5 | p4@ZYX |
| 1.17e-34 | FFCP PHASE2:Hg19::chr4:15704679..15704733,+#_1cd73bb2280b2c190f4e67102790a044 | p1@BST1 |
| 1.17e-34 | FFCP PHASE1:Hg19::chr4:15704679..15704733,+#_1cd73bb2280b2c190f4e67102790a044 | p1@BST1 |
| 1.75e-34 | FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_1746e8398ab7218089fd6379fb6fd762 | p4@DNASE1L1 |
| 1.75e-34 | FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_1746e8398ab7218089fd6379fb6fd762 | p4@DNASE1L1 |
| 1.89e-34 | FFCP PHASE2:Hg19::chr19:50015870..50015934,+#_dd94cf526174030025339db141df48d4 | p2@FCGRT |
| 1.89e-34 | FFCP PHASE1:Hg19::chr19:50015870..50015934,+#_dd94cf526174030025339db141df48d4 | p2@FCGRT |
| 2.1e-34 | FFCP PHASE1:Hg19::chr12:54813229..54813273,-#_0f298a34295f411cd998bcc39c4e1ed8 | p3@ITGA5 |
| 2.1e-34 | FFCP PHASE2:Hg19::chr12:54813229..54813273,-#_0f298a34295f411cd998bcc39c4e1ed8 | p3@ITGA5 |
| 4.33e-34 | FFCP PHASE2:Hg19::chr19:44174310..44174329,-#_3f2d1b8ae27922107778c0191bccd7e6 | p1@PLAUR |
| 4.33e-34 | FFCP PHASE1:Hg19::chr19:44174310..44174329,-#_3f2d1b8ae27922107778c0191bccd7e6 | p1@PLAUR |
| 7.52e-34 | FFCP PHASE1:Hg19::chr1:221052776..221052799,+#_f619a14ef55f1e78421722fc4ea14692 | p1@HLX |
| 7.52e-34 | FFCP PHASE2:Hg19::chr1:221052776..221052799,+#_f619a14ef55f1e78421722fc4ea14692 | p1@HLX |
| 8.49e-34 | FFCP PHASE2:Hg19::chr4:159093517..159093533,-#_b1413464e64297d37fdc2972295dc883 | p1@FAM198B |
| 8.49e-34 | FFCP PHASE1:Hg19::chr4:159093517..159093533,-#_b1413464e64297d37fdc2972295dc883 | p1@FAM198B |
| 3.78e-33 | FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_4aabb581bc69f390c3d1d90a426097b0 | p1@ANPEP |
| 3.78e-33 | FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_4aabb581bc69f390c3d1d90a426097b0 | p1@ANPEP |
| 3.32e-32 | FFCP PHASE1:Hg19::chr7:97911007..97911027,+#_51edcff67e78f8087662ad3c40ff4bdc | p3@BRI3 |
| 3.32e-32 | FFCP PHASE2:Hg19::chr7:97911007..97911027,+#_51edcff67e78f8087662ad3c40ff4bdc | p3@BRI3 |
| 5.72e-32 | FFCP PHASE2:Hg19::chr7:97910981..97911006,+#_e13bcfff9a301d9cd665bb83b97049eb | p1@BRI3 |
| 5.72e-32 | FFCP PHASE1:Hg19::chr7:97910981..97911006,+#_e13bcfff9a301d9cd665bb83b97049eb | p1@BRI3 |
| 5.73e-32 | FFCP PHASE2:Hg19::chr19:54371114..54371180,+#_a109e000f58d8a925cd2faa66a619e88 | p1@MYADM |
| 5.73e-32 | FFCP PHASE1:Hg19::chr19:54371114..54371180,+#_a109e000f58d8a925cd2faa66a619e88 | p1@MYADM |
| 7.25e-32 | FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_5e731a25649a1b8025ec6d1a9fcd542c | p4@UBE2D3 |
| 7.25e-32 | FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_5e731a25649a1b8025ec6d1a9fcd542c | p4@UBE2D3 |
| 7.82e-32 | FFCP PHASE1:Hg19::chr19:50015936..50015981,+#_3cf65d96ebf7ecb377c82d23ffddebbe | p3@FCGRT |
| 7.82e-32 | FFCP PHASE2:Hg19::chr19:50015936..50015981,+#_3cf65d96ebf7ecb377c82d23ffddebbe | p3@FCGRT |
| 8.33e-32 | FFCP PHASE2:Hg19::chr8:134584101..134584143,-#_43cd1f089be69d23b77eed7fab21430f | p2@ST3GAL1 |
| 8.33e-32 | FFCP PHASE1:Hg19::chr8:134584101..134584143,-#_43cd1f089be69d23b77eed7fab21430f | p2@ST3GAL1 |
| 1.49e-31 | FFCP PHASE1:Hg19::chr7:143078652..143078754,+#_c0d47709141434a4aeac9bf2badd7d40 | p2@ZYX |
| 1.49e-31 | FFCP PHASE2:Hg19::chr7:143078652..143078754,+#_c0d47709141434a4aeac9bf2badd7d40 | p2@ZYX |
| 2.42e-31 | FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_7fc3c50a978696142221dfbdd0c1d970 | p3@ARHGEF10L |
| 2.42e-31 | FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_7fc3c50a978696142221dfbdd0c1d970 | p3@ARHGEF10L |
| 2.88e-31 | FFCP PHASE1:Hg19::chr12:65153154..65153171,-#_d230a4b6114260c92b23bd7ae77268a8 | p2@GNS |
| 2.88e-31 | FFCP PHASE2:Hg19::chr12:65153154..65153171,-#_d230a4b6114260c92b23bd7ae77268a8 | p2@GNS |
| 8.04e-31 | FFCP PHASE1:Hg19::chr1:221053049..221053075,+#_ae797ebccde076e210f26ab6ca1ea0d1 | p3@HLX |
| 8.04e-31 | FFCP PHASE2:Hg19::chr1:221053049..221053075,+#_ae797ebccde076e210f26ab6ca1ea0d1 | p3@HLX |
| 8.77e-31 | FFCP PHASE2:Hg19::chr1:87170448..87170539,+#_e76ff13f79be608165eb87c34c14bf4c | p1@SH3GLB1 |
| 8.77e-31 | FFCP PHASE1:Hg19::chr1:87170448..87170539,+#_e76ff13f79be608165eb87c34c14bf4c | p1@SH3GLB1 |
| 9.41e-31 | FFCP PHASE1:Hg19::chr10:104403641..104403699,+#_563a0200e18ccc46f2b716b7c951d861 | p@chr10:104403641..104403699, + |
| 9.41e-31 | FFCP PHASE2:Hg19::chr10:104403641..104403699,+#_563a0200e18ccc46f2b716b7c951d861 | p@chr10:104403641..104403699, + |
| 9.71e-31 | FFCP PHASE2:Hg19::chr4:80994210..80994284,-#_ddeec7e617dfc71be3646cb7465c1ffd | p2@ANTXR2 |
| 9.71e-31 | FFCP PHASE1:Hg19::chr4:80994210..80994284,-#_ddeec7e617dfc71be3646cb7465c1ffd | p2@ANTXR2 |
| 9.83e-31 | FFCP PHASE1:Hg19::chr4:122618095..122618161,-#_9ac25bd1d45e609b5116dd16f24d2ba9 | p1@ANXA5 |
| 9.83e-31 | FFCP PHASE2:Hg19::chr4:122618095..122618161,-#_9ac25bd1d45e609b5116dd16f24d2ba9 | p1@ANXA5 |
| 1.49e-30 | FFCP PHASE1:Hg19::chr9:130616952..130616973,-#_93ed591b3e81b87330d6d14328bea52e | p3@ENG |
| 1.49e-30 | FFCP PHASE2:Hg19::chr9:130616952..130616973,-#_93ed591b3e81b87330d6d14328bea52e | p3@ENG |
| 1.87e-30 | FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_1f2937f34dae190bdb9c9b837e6dc9f8 | p2@DDOST |
| 1.87e-30 | FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_1f2937f34dae190bdb9c9b837e6dc9f8 | p2@DDOST |
| 3.28e-30 | FFCP PHASE1:Hg19::chrX:46433193..46433237,+#_8433ad40fe02e8e2c13150a91c183a10 | p1@CHST7 |
| 3.28e-30 | FFCP PHASE2:Hg19::chrX:46433193..46433237,+#_8433ad40fe02e8e2c13150a91c183a10 | p1@CHST7 |
| 3.51e-30 | FFCP PHASE1:Hg19::chr17:81037473..81037498,+#_ed8359ff5f89a30ef1b96c39172e5087 | p1@METRNL |
| 3.51e-30 | FFCP PHASE2:Hg19::chr17:81037473..81037498,+#_ed8359ff5f89a30ef1b96c39172e5087 | p1@METRNL |
| 3.8e-30 | FFCP PHASE2:Hg19::chr6:146864960..146864999,+#_c02c7fa752e26e30163b491be03d6ac6 | p1@RAB32 |
| 3.8e-30 | FFCP PHASE1:Hg19::chr6:146864960..146864999,+#_c02c7fa752e26e30163b491be03d6ac6 | p1@RAB32 |
| 5.98e-30 | FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_e6a472bed369c576fd67da90946c9765 | p1@GNAI2 |
| 5.98e-30 | FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_e6a472bed369c576fd67da90946c9765 | p1@GNAI2 |
| 6.52e-30 | FFCP PHASE1:Hg19::chr7:143077956..143078096,-#_653a4396044c7d5c04d8aecec4b8642b | p1@ENST00000429630 |
| 6.52e-30 | FFCP PHASE2:Hg19::chr7:143077956..143078096,-#_653a4396044c7d5c04d8aecec4b8642b | p1@ENST00000429630 |
| 7.62e-30 | FFCP PHASE2:Hg19::chr9:35732119..35732199,-#_e1263e1100c72c067f27fed2c130ba40 | p1@TLN1 |
| 7.62e-30 | FFCP PHASE1:Hg19::chr9:35732119..35732199,-#_e1263e1100c72c067f27fed2c130ba40 | p1@TLN1 |
| 9.35e-30 | FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_74913505d050632c3e344472474f2181 | p1@TICAM2, p2@TMED7-TICAM2 |
| 9.35e-30 | FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_74913505d050632c3e344472474f2181 | p1@TICAM2, p2@TMED7-TICAM2 |
| 1.51e-29 | FFCP PHASE1:Hg19::chr1:59762730..59762773,+#_71d7a46dcf94d790ac6053829d7d8534 | p1@FGGY |
| 1.51e-29 | FFCP PHASE2:Hg19::chr1:59762730..59762773,+#_71d7a46dcf94d790ac6053829d7d8534 | p1@FGGY |
| 1.57e-29 | FFCP PHASE2:Hg19::chr11:67120956..67120972,-#_296fbdc92c86b20aec1f98a6c3ba0963 | p2@POLD4 |
| 1.57e-29 | FFCP PHASE1:Hg19::chr11:67120956..67120972,-#_296fbdc92c86b20aec1f98a6c3ba0963 | p2@POLD4 |
| 1.96e-29 | FFCP PHASE1:Hg19::chr11:504867..504925,-#_f32c12e18610522056af521897caeddd | p3@RNH1 |
| 1.96e-29 | FFCP PHASE2:Hg19::chr11:504867..504925,-#_f32c12e18610522056af521897caeddd | p3@RNH1 |
| 3.49e-29 | FFCP PHASE2:Hg19::chr4:159092525..159092574,-#_376b9e5df3ebdefa75c504d0ef73a403 | p4@FAM198B |
| 3.49e-29 | FFCP PHASE1:Hg19::chr4:159092525..159092574,-#_376b9e5df3ebdefa75c504d0ef73a403 | p4@FAM198B |
| 5.21e-29 | FFCP PHASE1:Hg19::chr3:148709310..148709337,+#_6b19620f80f06b3664151c101954a8ad | p1@GYG1 |
| 5.21e-29 | FFCP PHASE2:Hg19::chr3:148709310..148709337,+#_6b19620f80f06b3664151c101954a8ad | p1@GYG1 |
| 6.23e-29 | FFCP PHASE1:Hg19::chr8:146078927..146078951,-#_fee4afdee1d57f2162c849809599e4dd | p4@COMMD5 |
| 6.23e-29 | FFCP PHASE2:Hg19::chr8:146078927..146078951,-#_fee4afdee1d57f2162c849809599e4dd | p4@COMMD5 |
| 7.59e-29 | FFCP PHASE2:Hg19::chr4:10118348..10118395,-#_7ea0c0c0433fc75e34a2bc598c068f19 | p1@WDR1 |
| 7.59e-29 | FFCP PHASE1:Hg19::chr4:10118348..10118395,-#_7ea0c0c0433fc75e34a2bc598c068f19 | p1@WDR1 |
| 8.57e-29 | FFCP PHASE1:Hg19::chr12:53694132..53694153,-#_84dc8cf4deb5904e5a119cb9bac1ac6c | p1@ENST00000550263 |
| 8.57e-29 | FFCP PHASE2:Hg19::chr12:53694132..53694153,-#_84dc8cf4deb5904e5a119cb9bac1ac6c | p1@ENST00000550263 |
