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{{UBERON
 
{{UBERON
|id=UBERON:0004177
+
|alt_id=
|name=hemopoietic organ
 
|namespace=
 
|def="Organ that is part of the hematopoietic system." [GOC:Obol]
 
|xref=BTO:0004605;;FMA:7143
 
|is_a=UBERON:0000062;;UBERON:0004120
 
|synonym="haematological system organ" EXACT [OBOL:automatic];;"haemopoietic system organ" EXACT [OBOL:automatic];;"hematopoeitic or lymphoid organ" NARROW [];;"hematopoietic system organ" EXACT [OBOL:automatic];;"lymphoid organ" NARROW [BTO:0004605, FMA:7143];;"organ of haematological system" EXACT [OBOL:automatic];;"organ of haemopoietic system" EXACT [OBOL:automatic];;"organ of hematopoietic system" EXACT [OBOL:automatic];;"organ of organa haemopoietica" EXACT [OBOL:automatic];;"organa haemopoietica organ" EXACT [OBOL:automatic]
 
 
|comment=note that the FMA class 'lymphoid organ' is a general anatomical term
 
|comment=note that the FMA class 'lymphoid organ' is a general anatomical term
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="Organ that is part of the hematopoietic system." [GOC:Obol]
|subset=organ_slim
 
|adjacent_to=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=UBERON:0004177
 +
|is_a=UBERON:0000062 ;;UBERON:0004120
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=hemopoietic organ
 +
|namespace=FANTOM
 +
|obo_creation_date=
 
|part_of=UBERON:0002390
 
|part_of=UBERON:0002390
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
+
|subset=organ_slim
|preceded_by=
+
|synonym="haematological system organ" EXACT [OBOL:automatic];;"haemopoietic system organ" EXACT [OBOL:automatic];;"hematopoeitic or lymphoid organ" NARROW [];;"hematopoietic system organ" EXACT [OBOL:automatic];;"lymphoid organ" NARROW [BTO:0004605, FMA:7143];;"organ of haematological system" EXACT [OBOL:automatic];;"organ of haemopoietic system" EXACT [OBOL:automatic];;"organ of hematopoietic system" EXACT [OBOL:automatic];;"organ of organa haemopoietica" EXACT [OBOL:automatic];;"organa haemopoietica organ" EXACT [OBOL:automatic]
 +
|union_of=
 +
|xref=BTO:0004605;;FMA:7143
 
}}
 
}}

Latest revision as of 08:44, 12 September 2014

Name:hemopoietic organ
Namespace:FANTOM
Definition:"Organ that is part of the hematopoietic system." [GOC:Obol]
Xrefs:
links:

BTO:0004605

FMA:7143
Synonyms: "haematological system organ" EXACT [OBOL:automatic]
"haemopoietic system organ" EXACT [OBOL:automatic]
"hematopoeitic or lymphoid organ" NARROW []
"hematopoietic system organ" EXACT [OBOL:automatic]
"lymphoid organ" NARROW [BTO:0004605, FMA:7143]
"organ of haematological system" EXACT [OBOL:automatic]
"organ of haemopoietic system" EXACT [OBOL:automatic]
"organ of hematopoietic system" EXACT [OBOL:automatic]
"organ of organa haemopoietica" EXACT [OBOL:automatic]
"organa haemopoietica organ" EXACT [OBOL:automatic]
Comments:note that the FMA class 'lymphoid organ' is a general anatomical term
Subset: organ_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002390(hematopoietic system)



Children

is a:UBERON:0002106 (spleen),UBERON:0002370 (thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004177 (hemopoietic organ), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.28e-84FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_dc933c53b05fab2a24db6ee690707fdap3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.28e-84FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_dc933c53b05fab2a24db6ee690707fdap3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1
1.79e-75FFCP PHASE2:Hg19::chr14:106653357..106653369,+#_7883c3d68632ca7beb0d143e3f303077p@chr14:106653357..106653369, +
1.79e-75FFCP PHASE1:Hg19::chr14:106653357..106653369,+#_7883c3d68632ca7beb0d143e3f303077p@chr14:106653357..106653369, +
6.87e-64FFCP PHASE1:Hg19::chr14:22927984..22927999,+#_c2e3956933d883556af719e802f4df7cp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
6.87e-64FFCP PHASE1:Hg19::chr2:95715295..95715305,+#_c2e3956933d883556af719e802f4df7cp@chr2:95715295..95715305, +
6.87e-64FFCP PHASE2:Hg19::chr2:95715295..95715305,+#_c2e3956933d883556af719e802f4df7cp@chr2:95715295..95715305, +
6.87e-64FFCP PHASE2:Hg19::chr14:22927984..22927999,+#_c2e3956933d883556af719e802f4df7cp4@uc001wea.3, p4@uc010ajt.2, p4@uc010aju.1
4.76e-57FFCP PHASE2:Hg19::chr2:57846504..57846542,+#_31a5ed88b11736d052fed0528d312d84p@chr2:57846504..57846542, +
4.76e-57FFCP PHASE2:Hg19::chr2:57926329..57926337,-#_31a5ed88b11736d052fed0528d312d84p@chr2:57926329..57926337, -
4.76e-57FFCP PHASE2:Hg19::chr2:86992669..86992684,+#_31a5ed88b11736d052fed0528d312d84p8@RMND5A
4.76e-57FFCP PHASE2:Hg19::chr2:86998329..86998374,+#_31a5ed88b11736d052fed0528d312d84p16@RMND5A
4.76e-57FFCP PHASE2:Hg19::chr2:87017428..87017437,+#_31a5ed88b11736d052fed0528d312d84p@chr2:87017428..87017437, +
4.76e-57FFCP PHASE2:Hg19::chr2:87018380..87018390,-#_31a5ed88b11736d052fed0528d312d84p6@CD8A
4.76e-57FFCP PHASE2:Hg19::chr2:87018900..87018905,+#_31a5ed88b11736d052fed0528d312d84p@chr2:87018900..87018905, +
4.76e-57FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_31a5ed88b11736d052fed0528d312d84p2@ENST00000517384
4.76e-57FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_31a5ed88b11736d052fed0528d312d84p1@ENST00000517384
4.76e-57FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_31a5ed88b11736d052fed0528d312d84p11@PDLIM2
4.76e-57FFCP PHASE2:Hg19::chr13:99628323..99628332,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628323..99628332, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628347..99628352,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628347..99628352, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628369..99628374,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628369..99628374, -
4.76e-57FFCP PHASE2:Hg19::chr13:99628388..99628399,-#_31a5ed88b11736d052fed0528d312d84p@chr13:99628388..99628399, -
4.76e-57FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_31a5ed88b11736d052fed0528d312d84p1@ENST00000524012
4.76e-57FFCP PHASE2:Hg19::chr14:22942319..22942322,+#_31a5ed88b11736d052fed0528d312d84p4@uc001wec.2
4.76e-57FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_31a5ed88b11736d052fed0528d312d84p1@uc003pyn.1
4.76e-57FFCP PHASE1:Hg19::chr6:135644480..135644490,-#_31a5ed88b11736d052fed0528d312d84p16@AHI1
4.76e-57FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_31a5ed88b11736d052fed0528d312d84p60@SYNE1
4.76e-57FFCP PHASE1:Hg19::chr6:27215380..27215394,+#_31a5ed88b11736d052fed0528d312d84p12@PRSS16
4.76e-57FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_31a5ed88b11736d052fed0528d312d84p@chr2:162762361..162762364, +
4.76e-57FFCP PHASE2:Hg19::chr12:123559708..123559720,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123559708..123559720, -
4.76e-57FFCP PHASE2:Hg19::chr12:123559773..123559784,-#_31a5ed88b11736d052fed0528d312d84-, p@chr12:123559773..123559784
4.76e-57FFCP PHASE2:Hg19::chr12:123560608..123560615,-#_31a5ed88b11736d052fed0528d312d84p24@PITPNM2
4.76e-57FFCP PHASE2:Hg19::chr12:123560793..123560802,+#_31a5ed88b11736d052fed0528d312d84p@chr12:123560793..123560802, +
4.76e-57FFCP PHASE2:Hg19::chr12:123607146..123607168,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123607146..123607168, -
4.76e-57FFCP PHASE2:Hg19::chr12:123627753..123627760,+#_31a5ed88b11736d052fed0528d312d84p@chr12:123627753..123627760, +
4.76e-57FFCP PHASE2:Hg19::chr12:123634449..123634460,-#_31a5ed88b11736d052fed0528d312d84p25@PITPNM2
4.76e-57FFCP PHASE2:Hg19::chr12:123636839..123636885,-#_31a5ed88b11736d052fed0528d312d84p@chr12:123636839..123636885, -
4.76e-57FFCP PHASE2:Hg19::chr12:133413547..133413557,-#_31a5ed88b11736d052fed0528d312d84p13@POLE
4.76e-57FFCP PHASE2:Hg19::chr12:133414662..133414671,-#_31a5ed88b11736d052fed0528d312d84p@chr12:133414662..133414671, -
4.76e-57FFCP PHASE1:Hg19::chr7:142008868..142008879,-#_31a5ed88b11736d052fed0528d312d84p@chr7:142008868..142008879, -
4.76e-57FFCP PHASE1:Hg19::chr7:142510478..142510486,+#_31a5ed88b11736d052fed0528d312d84p@chr7:142510478..142510486, +
4.76e-57FFCP PHASE1:Hg19::chr7:142510979..142510986,+#_31a5ed88b11736d052fed0528d312d84p@chr7:142510979..142510986, +
4.76e-57FFCP PHASE1:Hg19::chr7:143216712..143216723,-#_31a5ed88b11736d052fed0528d312d84p@chr7:143216712..143216723, -
4.76e-57FFCP PHASE1:Hg19::chr7:155534000..155534006,+#_31a5ed88b11736d052fed0528d312d84p@chr7:155534000..155534006, +
4.76e-57FFCP PHASE2:Hg19::chr12:47205180..47205187,+#_31a5ed88b11736d052fed0528d312d84p@chr12:47205180..47205187, +
4.76e-57FFCP PHASE2:Hg19::chr12:48225126..48225164,+#_31a5ed88b11736d052fed0528d312d84p1@ENST00000548564, p1@ENST00000550720, p1@ENST00000550909
4.76e-57FFCP PHASE2:Hg19::chr12:48227243..48227269,+#_31a5ed88b11736d052fed0528d312d84p@chr12:48227243..48227269, +
4.76e-57FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_31a5ed88b11736d052fed0528d312d84p19@RAPGEF5
4.76e-57FFCP PHASE2:Hg19::chr12:59432175..59432191,+#_31a5ed88b11736d052fed0528d312d84p@chr12:59432175..59432191, +
4.76e-57FFCP PHASE2:Hg19::chr2:227771044..227771054,+#_31a5ed88b11736d052fed0528d312d84p9@RHBDD1
4.76e-57FFCP PHASE2:Hg19::chr2:227771357..227771363,+#_31a5ed88b11736d052fed0528d312d84p10@RHBDD1
4.76e-57FFCP PHASE1:Hg19::chr7:55506620..55506629,+#_31a5ed88b11736d052fed0528d312d84p@chr7:55506620..55506629, +
4.76e-57FFCP PHASE2:Hg19::chr2:233102726..233102734,+#_31a5ed88b11736d052fed0528d312d84p@chr2:233102726..233102734, +
4.76e-57FFCP PHASE2:Hg19::chr2:233184654..233184661,-#_31a5ed88b11736d052fed0528d312d84p@chr2:233184654..233184661, -
4.76e-57FFCP PHASE1:Hg19::chr7:71803260..71803270,-#_31a5ed88b11736d052fed0528d312d84p@chr7:71803260..71803270, -
4.76e-57FFCP PHASE1:Hg19::chr7:71803407..71803416,-#_31a5ed88b11736d052fed0528d312d84p@chr7:71803407..71803416, -
4.76e-57FFCP PHASE2:Hg19::chr2:242080265..242080277,-#_31a5ed88b11736d052fed0528d312d84p20@PASK
4.76e-57FFCP PHASE2:Hg19::chr3:142891652..142891662,-#_31a5ed88b11736d052fed0528d312d84p@chr3:142891652..142891662, -
4.76e-57FFCP PHASE2:Hg19::chr3:155273127..155273136,-#_31a5ed88b11736d052fed0528d312d84p4@AK093601
4.76e-57FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_31a5ed88b11736d052fed0528d312d84p@chr9:124516729..124516752, +
4.76e-57FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_31a5ed88b11736d052fed0528d312d84p12@JDP2
4.76e-57FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_31a5ed88b11736d052fed0528d312d84p@chr9:127260615..127260651, -
4.76e-57FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_31a5ed88b11736d052fed0528d312d84p8@NR5A1
4.76e-57FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_31a5ed88b11736d052fed0528d312d84p2@NR5A1
4.76e-57FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_31a5ed88b11736d052fed0528d312d84p5@NR5A1
4.76e-57FFCP PHASE2:Hg19::chr3:19007717..19007728,+#_31a5ed88b11736d052fed0528d312d84p@chr3:19007717..19007728, +
4.76e-57FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_31a5ed88b11736d052fed0528d312d84p18@AIF1L
4.76e-57FFCP PHASE1:Hg19::chr9:134025299..134025306,+#_31a5ed88b11736d052fed0528d312d84p39@NUP214
4.76e-57FFCP PHASE1:Hg19::chr9:134025314..134025327,+#_31a5ed88b11736d052fed0528d312d84p31@NUP214
4.76e-57FFCP PHASE1:Hg19::chr9:134025337..134025345,+#_31a5ed88b11736d052fed0528d312d84p37@NUP214
4.76e-57FFCP PHASE2:Hg19::chr14:98229095..98229108,-#_31a5ed88b11736d052fed0528d312d84p1@ENST00000555187
4.76e-57FFCP PHASE2:Hg19::chr3:34517538..34517551,+#_31a5ed88b11736d052fed0528d312d84p@chr3:34517538..34517551, +
4.76e-57FFCP PHASE2:Hg19::chr3:34517741..34517784,+#_31a5ed88b11736d052fed0528d312d84p@chr3:34517741..34517784, +
4.76e-57FFCP PHASE2:Hg19::chr3:35682974..35682982,+#_31a5ed88b11736d052fed0528d312d84p45@ARPP21
4.76e-57FFCP PHASE2:Hg19::chr3:35683004..35683015,+#_31a5ed88b11736d052fed0528d312d84p42@ARPP21
4.76e-57FFCP PHASE2:Hg19::chr3:35696112..35696151,-#_31a5ed88b11736d052fed0528d312d84p@chr3:35696112..35696151, -
4.76e-57FFCP PHASE2:Hg19::chr3:35701302..35701317,-#_31a5ed88b11736d052fed0528d312d84p@chr3:35701302..35701317, -
4.76e-57FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_31a5ed88b11736d052fed0528d312d84p@chr17:78171885..78171900, +
4.76e-57FFCP PHASE2:Hg19::chr5:82201986..82201996,+#_31a5ed88b11736d052fed0528d312d84p@chr5:82201986..82201996, +
4.76e-57FFCP PHASE2:Hg19::chr17:80866179..80866188,+#_31a5ed88b11736d052fed0528d312d84p@chr17:80866179..80866188, +
4.76e-57FFCP PHASE2:Hg19::chr18:13437980..13437986,+#_31a5ed88b11736d052fed0528d312d84p@chr18:13437980..13437986, +
4.76e-57FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_31a5ed88b11736d052fed0528d312d84p1@uc003pyn.1
4.76e-57FFCP PHASE2:Hg19::chr6:135644480..135644490,-#_31a5ed88b11736d052fed0528d312d84p16@AHI1
4.76e-57FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_31a5ed88b11736d052fed0528d312d84p60@SYNE1
4.76e-57FFCP PHASE2:Hg19::chr6:27215380..27215394,+#_31a5ed88b11736d052fed0528d312d84p12@PRSS16
4.76e-57FFCP PHASE2:Hg19::chr19:28877072..28877084,-#_31a5ed88b11736d052fed0528d312d84p@chr19:28877072..28877084, -
4.76e-57FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_31a5ed88b11736d052fed0528d312d84p@chr19:32401253..32401271, -
4.76e-57FFCP PHASE2:Hg19::chr7:142008868..142008879,-#_31a5ed88b11736d052fed0528d312d84p@chr7:142008868..142008879, -
4.76e-57FFCP PHASE2:Hg19::chr7:142510478..142510486,+#_31a5ed88b11736d052fed0528d312d84p@chr7:142510478..142510486, +
4.76e-57FFCP PHASE2:Hg19::chr7:142510979..142510986,+#_31a5ed88b11736d052fed0528d312d84p@chr7:142510979..142510986, +
4.76e-57FFCP PHASE2:Hg19::chr7:143216712..143216723,-#_31a5ed88b11736d052fed0528d312d84p@chr7:143216712..143216723, -
4.76e-57FFCP PHASE2:Hg19::chr7:155534000..155534006,+#_31a5ed88b11736d052fed0528d312d84p@chr7:155534000..155534006, +
4.76e-57FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_31a5ed88b11736d052fed0528d312d84p19@RAPGEF5
4.76e-57FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_31a5ed88b11736d052fed0528d312d84p7@CD5L
4.76e-57FFCP PHASE2:Hg19::chr1:158170478..158170491,-#_31a5ed88b11736d052fed0528d312d84-, p@chr1:158170478..158170491
4.76e-57FFCP PHASE2:Hg19::chr1:158226030..158226041,+#_31a5ed88b11736d052fed0528d312d84p@chr1:158226030..158226041, +
4.76e-57FFCP PHASE2:Hg19::chr1:158259849..158259854,+#_31a5ed88b11736d052fed0528d312d84p11@CD1C
4.76e-57FFCP PHASE2:Hg19::chr1:158260453..158260459,-#_31a5ed88b11736d052fed0528d312d84p@chr1:158260453..158260459, -
4.76e-57FFCP PHASE2:Hg19::chr1:158260649..158260652,+#_31a5ed88b11736d052fed0528d312d84p13@CD1C
4.76e-57FFCP PHASE2:Hg19::chr1:158301280..158301298,+#_31a5ed88b11736d052fed0528d312d84p@chr1:158301280..158301298, +