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{{UBERON
{{UBERON
|id=UBERON:0004904
|id=UBERON:0004904
|name=optic nerve
|name=nerve connecting eye with brain
|namespace=
|namespace=
|def="A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
|def="A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
|xref=BTO:0000966;;EV:0100351;;FBbt:00001956;;RETIRED_EHDAA2:0001314;;SCTID:180938001;;TADS:0000232
|xref=BTO:0000966;;EV:0100351;;FBbt:00001956;;TADS:0000232
|is_a=UBERON:0001785
|is_a=UBERON:0001021
|synonym="optic nerve (generic)" EXACT []
|synonym="optic nerve" BROAD [BTO:0000966];;"optic nerve (generic)" EXACT []
|comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
|comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
|alt_id=
|alt_id=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=grouping_class
|subset=grouping_class
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002104
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:05, 26 June 2012

Name:nerve connecting eye with brain
Definition:"A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
Xrefs:
links:

BTO:0000966
EV:0100351
FBbt:00001956

TADS:0000232
Synonyms: "optic nerve" BROAD [BTO:0000966]
"optic nerve (generic)" EXACT []
Comments:for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II)
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001021(nerve)



Children

is a:UBERON:0000941 (cranial nerve II)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004904 (nerve connecting eye with brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439bp@chr5:149250331..149250335, -
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_284345d22cda2bdcf64430d9e57eebc0p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr3:131712314..131712315,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_284345d22cda2bdcf64430d9e57eebc0p41@NAV3
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_284345d22cda2bdcf64430d9e57eebc0p10@PPAP2A
2.55e-98FFCP PHASE2:Hg19::chr1:86911063..86911068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE1:Hg19::chr2:242808350..242808356,+#_284345d22cda2bdcf64430d9e57eebc0p2@LOC100131763
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_284345d22cda2bdcf64430d9e57eebc0p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_284345d22cda2bdcf64430d9e57eebc0p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr5:54763740..54763746,-#_284345d22cda2bdcf64430d9e57eebc0p10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_284345d22cda2bdcf64430d9e57eebc0p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr2:192696669..192696673,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:192696669..192696673, +
2.55e-98FFCP PHASE2:Hg19::chr2:242808350..242808356,+#_284345d22cda2bdcf64430d9e57eebc0p2@LOC100131763
2.55e-98FFCP PHASE1:Hg19::chr2:240176859..240176904,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:240176859..240176904, -
2.55e-98FFCP PHASE2:Hg19::chr2:240176859..240176904,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:240176859..240176904, -
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:33229308..33229311, -
2.55e-98FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_284345d22cda2bdcf64430d9e57eebc0p@chr3:163246025..163246029, +
2.55e-98FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_284345d22cda2bdcf64430d9e57eebc0p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:97626726..97626741, +
2.55e-98FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_284345d22cda2bdcf64430d9e57eebc0p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr5:33229308..33229311,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:33229308..33229311, -
2.55e-98FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_284345d22cda2bdcf64430d9e57eebc0p@chr3:163246025..163246029, +
2.55e-98FFCP PHASE2:Hg19::chr11:30166055..30166059,-#_284345d22cda2bdcf64430d9e57eebc0p@chr11:30166055..30166059, -
2.55e-98FFCP PHASE2:Hg19::chr2:97626726..97626741,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:97626726..97626741, +
2.55e-98FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_284345d22cda2bdcf64430d9e57eebc0p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_284345d22cda2bdcf64430d9e57eebc0p25@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_284345d22cda2bdcf64430d9e57eebc0p@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_284345d22cda2bdcf64430d9e57eebc0p@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr2:21277180..21277193,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr7:73444812..73444816,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:73444812..73444816, +
2.55e-98FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:29645795..29645797, +
2.55e-98FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_284345d22cda2bdcf64430d9e57eebc0p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_284345d22cda2bdcf64430d9e57eebc0p41@NAV3
2.55e-98FFCP PHASE1:Hg19::chr1:203036812..203036840,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:203036812..203036840, +
2.55e-98FFCP PHASE1:Hg19::chr2:171939999..171940009,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE2:Hg19::chr2:21277180..21277193,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:21277180..21277193, +
2.55e-98FFCP PHASE2:Hg19::chr7:73444812..73444816,+#_284345d22cda2bdcf64430d9e57eebc0p@chr7:73444812..73444816, +
2.55e-98FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_284345d22cda2bdcf64430d9e57eebc0p@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr3:27750995..27750997,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:27750995..27750997, -
2.55e-98FFCP PHASE2:Hg19::chr2:29645795..29645797,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:29645795..29645797, +
2.55e-98FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:203036812..203036840, +
2.55e-98FFCP PHASE1:Hg19::chr1:169073323..169073334,+#_284345d22cda2bdcf64430d9e57eebc0p4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_284345d22cda2bdcf64430d9e57eebc0p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_284345d22cda2bdcf64430d9e57eebc0p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:118927879..118927891, +
2.55e-98FFCP PHASE2:Hg19::chr2:192696669..192696673,+#_284345d22cda2bdcf64430d9e57eebc0p@chr2:192696669..192696673, +
2.55e-98FFCP PHASE2:Hg19::chr1:169073323..169073334,+#_284345d22cda2bdcf64430d9e57eebc0p4@ENST00000415637
2.55e-98FFCP PHASE1:Hg19::chr18:61506836..61506840,+#_284345d22cda2bdcf64430d9e57eebc0p@chr18:61506836..61506840, +
2.55e-98FFCP PHASE1:Hg19::chr5:126962527..126962529,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chrX:131884370..131884375,-#_284345d22cda2bdcf64430d9e57eebc0p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chrX:25873187..25873209,+#_284345d22cda2bdcf64430d9e57eebc0p@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr10:37679189..37679193,+#_284345d22cda2bdcf64430d9e57eebc0p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_284345d22cda2bdcf64430d9e57eebc0p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE2:Hg19::chr5:126962527..126962529,-#_284345d22cda2bdcf64430d9e57eebc0p@chr5:126962527..126962529, -
2.55e-98FFCP PHASE2:Hg19::chr13:64423563..64423566,+#_284345d22cda2bdcf64430d9e57eebc0p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_284345d22cda2bdcf64430d9e57eebc0p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_284345d22cda2bdcf64430d9e57eebc0p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:66713214..66713221,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr6:16317123..16317126,+#_284345d22cda2bdcf64430d9e57eebc0p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr5:58471631..58471634,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_284345d22cda2bdcf64430d9e57eebc0p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE1:Hg19::chr1:1361494..1361497,+#_284345d22cda2bdcf64430d9e57eebc0p7@TMEM88B
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE1:Hg19::chr5:24554148..24554153,+#_284345d22cda2bdcf64430d9e57eebc0p1@ENST00000510391
2.55e-98FFCP PHASE2:Hg19::chr1:66713214..66713221,+#_284345d22cda2bdcf64430d9e57eebc0p@chr1:66713214..66713221, +
2.55e-98FFCP PHASE2:Hg19::chr5:58471631..58471634,+#_284345d22cda2bdcf64430d9e57eebc0p@chr5:58471631..58471634, +
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_284345d22cda2bdcf64430d9e57eebc0p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE1:Hg19::chr4:139501766..139501798,-#_284345d22cda2bdcf64430d9e57eebc0p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_284345d22cda2bdcf64430d9e57eebc0p59@ANK3
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_284345d22cda2bdcf64430d9e57eebc0p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_284345d22cda2bdcf64430d9e57eebc0p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_284345d22cda2bdcf64430d9e57eebc0p@chr13:64423563..64423566, +
2.55e-98FFCP PHASE2:Hg19::chr9:79519652..79519664,-#_284345d22cda2bdcf64430d9e57eebc0p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_284345d22cda2bdcf64430d9e57eebc0p1@ENST00000510391

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